Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32866 Brassica carinata HOM05D006209 ORTHO05D007645 9.7e-33 142.9 73 100.0
Thhalv10025089m.g Eutrema salsugineum HOM05D006209 ORTHO05D007645 2.2e-16 88.6 54 77.8
Sp7g22690 Schrenkiella parvula HOM05D006209 ORTHO05D007645 2.8e-16 88.2 54 77.8
CARHR232090 Cardamine hirsuta HOM05D006209 ORTHO05D007645 7.0e-15 83.6 54 72.2
BraA01t01539Z Brassica rapa HOM05D006209 ORTHO05D007645 2.7e-14 81.6 54 72.2
BcaNung07359 Brassica carinata HOM05D006209 ORTHO05D007645 4.6e-14 80.9 54 72.2
BcaC09g50838 Brassica carinata HOM05D006209 ORTHO05D007645 5.9e-14 80.5 54 72.2
THA.LOC104800398 Tarenaya hassleriana HOM05D006209 ORTHO05D007645 1.3e-13 79.3 50 72.0
THA.LOC104824986 Tarenaya hassleriana HOM05D006209 ORTHO05D007645 1.3e-13 79.3 50 72.0
RcHm_v2.0_Chr7g0192541 Rosa chinensis HOM05D006209 ORTHO05D007645 2.3e-13 78.6 54 70.4
FAN08G2144 Fragaria x ananassa HOM05D006209 ORTHO05D007645 2.9e-13 78.2 54 70.4
FAN13G2576 Fragaria x ananassa HOM05D006209 ORTHO05D007645 2.9e-13 78.2 54 70.4
Sc12g0004970 Simmondsia chinensis HOM05D006209 ORTHO05D007645 2.9e-13 78.2 54 66.7
Aa31LG4G9900 Aethionema arabicum HOM05D006209 ORTHO05D007645 3.9e-13 77.8 54 68.5
Ca_16128_v3 Cicer arietinum L. HOM05D006209 ORTHO05D007645 3.9e-13 77.8 54 70.4
Ca_30305_v3 Cicer arietinum L. HOM05D006209 ORTHO05D007645 3.9e-13 77.8 54 70.4
Glyma.04G188400 Glycine max HOM05D006209 ORTHO05D007645 3.9e-13 77.8 54 70.4
Glyma.06G177400 Glycine max HOM05D006209 ORTHO05D007645 3.9e-13 77.8 54 70.4
FAN18G2337 Fragaria x ananassa HOM05D006209 ORTHO05D007645 5.0e-13 77.4 54 70.4
Carub.0007s1635 Capsella rubella HOM05D006209 ORTHO05D007645 6.6e-13 77.0 54 68.5
arahy.Tifrunner.gnm1.ann1.5EQE0P Arachis hypogaea HOM05D006209 ORTHO05D007645 8.6e-13 76.6 54 70.4
Medtr3g076930 Medicago truncatula HOM05D006209 ORTHO05D007645 8.6e-13 76.6 54 68.5
arahy.Tifrunner.gnm1.ann1.S747I7 Arachis hypogaea HOM05D006209 ORTHO05D007645 1.1e-12 76.3 54 70.4
MD06G1165600 Malus domestica HOM05D006209 ORTHO05D007645 1.1e-12 76.3 54 70.4
MD14G1171200 Malus domestica HOM05D006209 ORTHO05D007645 1.1e-12 76.3 54 70.4
Phvul.009G173800 Phaseolus vulgaris HOM05D006209 ORTHO05D007645 1.1e-12 76.3 53 67.9
Haze_07590 Corylus avellana HOM05D006209 ORTHO05D007645 2.5e-12 75.1 54 64.8
Lj5C130T5 Lonicera japonica HOM05D006209 ORTHO05D007645 2.5e-12 75.1 54 66.7
Prupe.5G165300 Prunus persica HOM05D006209 ORTHO05D007645 2.5e-12 75.1 54 68.5
A01p16040 Brassica napus HOM05D006209 ORTHO05D007645 3.3e-12 74.7 50 72.0
Thecc.03G026100 Theobroma cacao HOM05D006209 ORTHO05D007645 3.3e-12 74.7 54 70.4
TPR.G25676 Trifolium pratense HOM05D006209 ORTHO05D007645 3.3e-12 74.7 54 66.7
AUR62028724 Chenopodium quinoa HOM05D006209 ORTHO05D007645 4.3e-12 74.3 73 53.4
Ciclev10020078m.g Citrus clementina HOM05D006209 ORTHO05D007645 4.3e-12 74.3 54 66.7
Hma1.2p1_0046F.1_g027160 Hydrangea macrophylla HOM05D006209 ORTHO05D007645 4.3e-12 74.3 52 67.3
VMungo1309G1487 Vigna mungo HOM05D006209 ORTHO05D007645 5.6e-12 73.9 54 66.7
C01p20030 Brassica napus HOM05D006209 ORTHO05D007645 7.3e-12 73.6 50 72.0
BolC1t01930H Brassica oleracea HOM05D006209 ORTHO05D007645 7.3e-12 73.6 50 72.0
Dinv38524 Davidia involucrata HOM05D006209 ORTHO05D007645 7.3e-12 73.6 54 68.5
Rhsim08G0178000 Rhododendron simsii HOM05D006209 ORTHO05D007645 7.3e-12 73.6 54 63.0
vmacro19294 Vaccinium macrocarpon HOM05D006209 ORTHO05D007645 7.3e-12 73.6 54 63.0
CANSAT80G1924 Cannabis sativa HOM05D006209 ORTHO05D007645 9.5e-12 73.2 72 58.3
COL.COLO4_36757 Corchorus olitorius HOM05D006209 ORTHO05D007645 1.6e-11 72.4 54 68.5
TAR371G0588 Trochodendron aralioides HOM05D006209 ORTHO05D007645 1.6e-11 72.4 54 66.7
GSVIVG01007643001 Vitis vinifera HOM05D006209 ORTHO05D007645 1.6e-11 72.4 47 72.3
Cc04_g11480 Coffea canephora HOM05D006209 ORTHO05D007645 3.6e-11 71.2 67 59.7
Lalb_Chr23g0273351 Lupinus albus HOM05D006209 ORTHO05D007645 3.6e-11 71.2 54 64.8
Psat5g118240 Pisum sativum HOM05D006209 ORTHO05D007645 3.6e-11 71.2 54 64.8
PGR083G0853 Punica granatum HOM05D006209 ORTHO05D007645 3.6e-11 71.2 54 68.5
AUR62008142 Chenopodium quinoa HOM05D006209 ORTHO05D007645 4.7e-11 70.9 73 52.1
TWI14G0288 Tripterygium wilfordii HOM05D006209 ORTHO05D007645 4.7e-11 70.9 54 63.0
EL10Ac5g10654 Beta vulgaris HOM05D006209 ORTHO05D007645 6.1e-11 70.5 68 57.4
Solyc12g076320.2 Solanum lycopersicum HOM05D006209 ORTHO05D007645 6.1e-11 70.5 50 68.0
Sopen12g027590 Solanum pennellii HOM05D006209 ORTHO05D007645 6.1e-11 70.5 50 68.0
Nitab4.5_0000025g0360 Nicotiana tabacum HOM05D006209 ORTHO05D007645 8.0e-11 70.1 50 68.0
Nitab4.5_0001566g0050 Nicotiana tabacum HOM05D006209 ORTHO05D007645 8.0e-11 70.1 50 68.0
Oeu040860.1 Olea europaea HOM05D006209 ORTHO05D007645 8.0e-11 70.1 70 55.7
Nn4g22589 Nelumbo nucifera HOM05D006209 ORTHO05D007645 1.0e-10 69.7 47 72.3
Potri.012G086400 Populus trichocarpa HOM05D006209 ORTHO05D007645 1.0e-10 69.7 53 60.4
QL10p006868 Quercus lobata HOM05D006209 ORTHO05D007645 1.0e-10 69.7 53 60.4
Ah.11g051190 Amaranthus hybridus HOM05D006209 ORTHO05D007645 1.4e-10 69.3 67 58.2
Hund02788 Selenicereus undatus HOM05D006209 ORTHO05D007645 1.4e-10 69.3 54 63.0
CiPaw.11G019400 Carya illinoinensis HOM05D006209 ORTHO05D007645 1.8e-10 68.9 50 66.0
DCAR_021592 Daucus carota HOM05D006209 ORTHO05D007645 1.8e-10 68.9 54 63.0
Eucgr.B00217 Eucalyptus grandis HOM05D006209 ORTHO05D007645 1.8e-10 68.9 54 61.1
Gohir.A03G057200 Gossypium hirsutum HOM05D006209 ORTHO05D007645 1.8e-10 68.9 55 61.8
Gohir.D03G109100 Gossypium hirsutum HOM05D006209 ORTHO05D007645 1.8e-10 68.9 55 61.8
Gorai.003G115100 Gossypium raimondii HOM05D006209 ORTHO05D007645 1.8e-10 68.9 55 61.8
Potri.015G084900 Populus trichocarpa HOM05D006209 ORTHO05D007645 2.3e-10 68.6 53 58.5
CSS0022134 Camellia sinensis var. sinensis HOM05D006209 ORTHO05D007645 3.1e-10 68.2 54 63.0
Cfa019222 Carpinus fangiana HOM05D006209 ORTHO05D007645 3.1e-10 68.2 54 61.1
ECA232G4716 Erigeron canadensis HOM05D006209 ORTHO05D007645 4.0e-10 67.8 54 63.0
HanXRQChr10g0296031 Helianthus annuus HOM05D006209 ORTHO05D007645 4.0e-10 67.8 54 66.7
Sabra15G0107900 Salix brachista HOM05D006209 ORTHO05D007645 4.0e-10 67.8 53 58.5
Cpa.g.sc159.17 Carica papaya HOM05D006209 ORTHO05D007645 8.9e-10 66.6 54 63.0
CDE09G0716 Ceratophyllum demersum HOM05D006209 ORTHO05D007645 8.9e-10 66.6 52 63.5
CAN.G648.11 Capsicum annuum HOM05D006209 ORTHO05D007645 1.2e-09 66.2 49 65.3
MSTRG.11496 Avicennia marina HOM05D006209 ORTHO05D007645 1.5e-09 65.9 52 67.3
Peaxi162Scf00801g00216 Petunia axillaris HOM05D006209 ORTHO05D007645 1.5e-09 65.9 50 64.0
Migut.O00160 Erythranthe guttata HOM05D006209 ORTHO05D007645 2.0e-09 65.5 52 65.4
MELO3C002299.2 Cucumis melo HOM05D006209 ORTHO05D007645 3.4e-09 64.7 52 59.6
CsaV3_1G008850 Cucumis sativus L. HOM05D006209 ORTHO05D007645 5.8e-09 63.9 52 59.6
Sed0008195 Sechium edule HOM05D006209 ORTHO05D007645 5.8e-09 63.9 54 59.3
SalBow5G0732 Salvia bowleyana HOM05D006209 ORTHO05D007645 1.3e-08 62.8 52 59.6
PSO063G1215 Papaver somniferum HOM05D006209 ORTHO05D007645 2.2e-08 62.0 50 60.0
PSO754G0074 Papaver somniferum HOM05D006209 ORTHO05D007645 2.9e-08 61.6 50 60.0
ClCG03G003010 Citrullus lanatus HOM05D006209 ORTHO05D007645 3.7e-08 61.2 52 57.7
PSO063G4271 Papaver somniferum HOM05D006209 ORTHO05D007645 3.7e-08 61.2 50 60.0
SGA_v2.0_scaffold25G10798 Striga asiatica HOM05D006209 ORTHO05D007645 3.7e-08 61.2 54 61.1
Aqoxy5G03742 Aquilegia oxysepala HOM05D006209 ORTHO05D007645 4.9e-08 60.8 50 60.0
PSO357G0693 Papaver somniferum HOM05D006209 ORTHO05D007645 4.9e-08 60.8 50 58.0
SalBow5G2378 Salvia bowleyana HOM05D006209 ORTHO05D007645 6.4e-08 60.5 52 57.7
MBI06_g16065_MAGBIO Magnolia biondii HOM05D006209 ORTHO05D007645 1.1e-07 59.7 47 61.7
PSO357G0046 Papaver somniferum HOM05D006209 ORTHO05D007645 2.4e-07 58.5 50 58.0
SHI17264 Sapria himalayana HOM05D006209 ORTHO05D007645 3.2e-07 58.2 50 54.0
Lsat_1_v5_gn_4_77340 Lactuca sativa HOM05D006209 ORTHO05D007645 2.0e-06 55.5 54 59.3
ATR0824G215 Amborella trichopoda HOM05D006209 ORTHO05D007645 3.5e-06 54.7 43 62.8
HPP92_008110 Vanilla planifolia HOM05D006209 ORTHO05D007645 3.5e-06 54.7 50 54.0
HPP92_008121 Vanilla planifolia HOM05D006209 ORTHO05D007645 3.5e-06 54.7 50 54.0
Zm00001eb424890 Zea mays HOM05D006209 ORTHO05D007645 7.8e-06 53.5 47 57.4


User provided reference genes

Program Settings