Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32383 Brassica carinata HOM05D005207 ORTHO05D011102 2.4e-107 392.1 186 100.0
C09p70090 Brassica napus HOM05D005207 ORTHO05D011102 1.8e-75 286.2 186 75.8
BolC9t59752H Brassica oleracea HOM05D005207 ORTHO05D011102 1.8e-75 286.2 186 75.8
A10p29730 Brassica napus HOM05D005207 ORTHO05D011102 9.0e-75 283.9 172 77.9
BraA10t45015Z Brassica rapa HOM05D005207 ORTHO05D011102 9.0e-75 283.9 172 77.9
BcaC06g32380 Brassica carinata HOM05D005207 ORTHO05D011102 2.6e-74 282.3 172 78.5
C09p70110 Brassica napus HOM05D005207 ORTHO05D011102 2.6e-74 282.3 172 78.5
BolC9t59754H Brassica oleracea HOM05D005207 ORTHO05D011102 2.6e-74 282.3 172 78.5
BraA10t45014Z Brassica rapa HOM05D005207 ORTHO05D011102 2.8e-68 262.3 180 72.2
BcaC06g32555 Brassica carinata HOM05D005207 ORTHO05D011102 2.0e-58 229.6 199 59.8
BolC9t59760H Brassica oleracea HOM05D005207 ORTHO05D011102 9.4e-56 220.7 178 61.8
BcaC06g32559 Brassica carinata HOM05D005207 ORTHO05D011102 1.2e-55 220.3 140 72.1
A03p02800 Brassica napus HOM05D005207 ORTHO05D011102 1.8e-38 163.3 174 48.9
BraA03t09643Z Brassica rapa HOM05D005207 ORTHO05D011102 1.8e-38 163.3 174 48.9
C03p03220 Brassica napus HOM05D005207 ORTHO05D011102 8.8e-38 161.0 172 50.0
A03p02820 Brassica napus HOM05D005207 ORTHO05D011102 3.3e-37 159.1 172 49.4
BraA03t09645Z Brassica rapa HOM05D005207 ORTHO05D011102 3.3e-37 159.1 172 49.4
AL6G15310 Arabidopsis lyrata HOM05D005207 ORTHO05D011102 1.7e-36 156.8 177 48.6
AL6G14890 Arabidopsis lyrata HOM05D005207 ORTHO05D011102 7.0e-35 151.4 168 47.0
Carub.0006s0188 Capsella rubella HOM05D005207 ORTHO05D011102 9.1e-35 151.0 170 50.0
Aa31LG8G10620 Aethionema arabicum HOM05D005207 ORTHO05D011102 7.2e-32 141.4 178 46.1
Aa31LG8G10640 Aethionema arabicum HOM05D001653 ORTHO05D001751 4.7e-31 138.7 186 40.3
Carub.0006s0189 Capsella rubella HOM05D005207 ORTHO05D011102 6.1e-31 138.3 170 46.5
Carub.0006s0144 Capsella rubella HOM05D005207 ORTHO05D011102 1.4e-30 137.1 175 46.9
BcaNung06578 Brassica carinata HOM05D005207 ORTHO05D011102 3.0e-30 136.0 176 43.8
BolC3t13212H Brassica oleracea HOM05D005207 ORTHO05D011102 3.0e-30 136.0 154 43.5
AL3G20250 Arabidopsis lyrata HOM05D005207 ORTHO05D011102 8.8e-30 134.4 174 46.0
AL6G14750 Arabidopsis lyrata HOM05D005207 ORTHO05D011102 1.5e-29 133.7 175 44.0
AL6G14810 Arabidopsis lyrata HOM05D001907 ORTHO05D011102 1.5e-29 133.7 175 44.0
C03p02970 Brassica napus HOM05D005207 ORTHO05D011102 7.5e-29 131.3 154 43.5
BcaNung06579 Brassica carinata HOM05D005207 ORTHO05D011102 1.7e-28 130.2 126 52.4
Aa31LG8G10630 Aethionema arabicum HOM05D001653 ORTHO05D015791 1.8e-27 126.7 168 42.9
CARHR210960 Cardamine hirsuta HOM05D005207 ORTHO05D011102 2.9e-25 119.4 147 46.9
AL1G48230 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 3.6e-23 112.5 180 37.8
AT5G03480 Arabidopsis thaliana HOM05D005207 ORTHO05D012773 6.1e-23 111.7 161 40.4
Carub.0006s0230 Capsella rubella HOM05D005207 ORTHO05D012773 1.8e-22 110.2 198 35.9
C06p50450 Brassica napus HOM05D005207 ORTHO05D010629 5.2e-22 108.6 187 33.7
Carub.0006s1742 Capsella rubella HOM05D001907 ORTHO05D011102 8.9e-22 107.8 139 43.9
AL3G38420 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 2.6e-21 106.3 172 39.0
C06p50330 Brassica napus HOM05D005207 ORTHO05D010629 2.6e-21 106.3 187 33.7
C06p50380 Brassica napus HOM05D005207 ORTHO05D010629 3.4e-21 105.9 187 33.7
C06p50420 Brassica napus HOM05D005207 ORTHO05D010629 3.4e-21 105.9 187 33.7
BolC6t40070H Brassica oleracea HOM05D005207 ORTHO05D010629 7.5e-21 104.8 166 37.3
AL6G12880 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 1.3e-20 104.0 172 39.5
AT5G03495 Arabidopsis thaliana HOM05D005207 ORTHO05D012773 2.2e-20 103.2 165 38.8
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 2.8e-20 102.8 142 42.3
BraA07t31720Z Brassica rapa HOM05D005207 ORTHO05D010629 6.3e-20 101.7 174 32.8
BcaB01g04188 Brassica carinata HOM05D005207 ORTHO05D011102 1.8e-19 100.1 145 39.3
BcaC08g47266 Brassica carinata HOM05D005207 ORTHO05D010629 1.8e-19 100.1 187 33.2
Thhalv10021355m.g Eutrema salsugineum HOM05D005207 ORTHO05D021650 2.4e-19 99.8 219 34.7
AL6G12890 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 3.1e-19 99.4 166 37.3
A07p41910 Brassica napus HOM05D005207 ORTHO05D010629 9.2e-19 97.8 174 31.6
AT5G53700 Arabidopsis thaliana HOM05D005207 ORTHO05D012773 2.7e-18 96.3 188 36.7
AL6G12910 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 4.5e-18 95.5 167 40.1
AT3G09160 Arabidopsis thaliana HOM05D005207 ORTHO05D011102 4.5e-18 95.5 95 52.6
BolC8t52203H Brassica oleracea HOM05D008530 ORTHO05D011436 4.5e-18 95.5 199 34.7
AL1G25630 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 5.9e-18 95.1 196 34.7
BraA09t41666Z Brassica rapa HOM05D008530 ORTHO05D011436 2.9e-17 92.8 199 33.7
A09p63120 Brassica napus HOM05D008530 ORTHO05D011436 3.9e-17 92.4 199 33.2
BcaC02g12854 Brassica carinata HOM05D005207 ORTHO05D010629 8.6e-17 91.3 185 31.9
C08p46590 Brassica napus HOM05D008530 ORTHO05D011436 7.3e-16 88.2 178 34.8
BcaC02g08007 Brassica carinata HOM05D005207 ORTHO05D010629 9.5e-16 87.8 177 32.2
BcaC02g08009 Brassica carinata HOM05D005207 ORTHO05D010629 9.5e-16 87.8 177 32.2
C04p59480 Brassica napus HOM05D005207 ORTHO05D010629 9.5e-16 87.8 177 32.2
A04p23290 Brassica napus HOM05D005207 ORTHO05D010629 1.2e-15 87.4 177 32.2
BraA04t17858Z Brassica rapa HOM05D005207 ORTHO05D010629 1.2e-15 87.4 177 32.2
Thhalv10026130m.g Eutrema salsugineum HOM05D008530 ORTHO05D011436 2.8e-15 86.3 198 32.8
BcaB06g28378 Brassica carinata HOM05D005207 ORTHO05D010629 1.0e-14 84.3 170 31.2
C04p59240 Brassica napus HOM05D005207 ORTHO05D010629 1.4e-14 84.0 191 29.8
C04p59500 Brassica napus HOM05D005207 ORTHO05D010629 1.4e-14 84.0 177 31.6
BolC4t27435H Brassica oleracea HOM05D005207 ORTHO05D010629 1.4e-14 84.0 191 29.8
A03p03410 Brassica napus HOM05D000033 ORTHO05D005368 1.8e-14 83.6 130 36.2
BraA03t09691Z Brassica rapa HOM05D000033 ORTHO05D005368 1.8e-14 83.6 130 36.2
AL4G36910 Arabidopsis lyrata HOM05D008530 ORTHO05D011436 4.0e-14 82.4 134 35.8
C03p03270 Brassica napus HOM05D005207 ORTHO05D016117 5.2e-14 82.0 180 31.1
BolC3t12870H Brassica oleracea HOM05D005207 ORTHO05D016117 5.2e-14 82.0 180 31.1
AL777U10010 Arabidopsis lyrata HOM05D001049 ORTHO05D012773 6.8e-14 81.6 72 52.8
A09p63000 Brassica napus HOM05D008530 ORTHO05D011436 3.4e-13 79.3 180 32.8
BcaC02g07482 Brassica carinata HOM05D005207 ORTHO05D010629 5.8e-13 78.6 173 31.2
AL8G28020 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 7.5e-13 78.2 158 33.5
BcaB01g05240 Brassica carinata HOM05D002922 ORTHO05D024472 9.8e-13 77.8 138 35.5
BcaC02g08006 Brassica carinata HOM05D005207 ORTHO05D010629 9.8e-13 77.8 181 30.4
C03p09150 Brassica napus HOM05D002922 ORTHO05D024472 9.8e-13 77.8 138 35.5
C04p59510 Brassica napus HOM05D005207 ORTHO05D010629 9.8e-13 77.8 181 30.4
BolC3t13412H Brassica oleracea HOM05D002922 ORTHO05D024472 9.8e-13 77.8 138 35.5
BolC4t27455H Brassica oleracea HOM05D005207 ORTHO05D010629 9.8e-13 77.8 181 30.4
C04p59490 Brassica napus HOM05D005207 ORTHO05D010629 2.9e-12 76.3 181 30.4
BcaC02g08008 Brassica carinata HOM05D005207 ORTHO05D010629 3.7e-12 75.9 182 30.2
BcaB01g06006 Brassica carinata HOM05D005207 ORTHO05D010629 4.9e-12 75.5 79 50.6
A03p02860 Brassica napus HOM05D005207 ORTHO05D016117 6.4e-12 75.1 84 48.8
BraA03t09648Z Brassica rapa HOM05D005207 ORTHO05D016117 6.4e-12 75.1 84 48.8
BcaB01g05675 Brassica carinata HOM05D005207 ORTHO05D010629 8.3e-12 74.7 76 51.3
BcaB01g06000 Brassica carinata HOM05D005207 ORTHO05D010629 1.1e-11 74.3 82 47.6
A04p23300 Brassica napus HOM05D005207 ORTHO05D010629 1.1e-11 74.3 183 30.1
BolC8t52199H Brassica oleracea HOM05D008530 ORTHO05D011436 1.1e-11 74.3 180 31.7
BcaB01g06007 Brassica carinata HOM05D005207 ORTHO05D011102 1.4e-11 73.9 83 51.8
A09p66540 Brassica napus HOM05D005207 ORTHO05D024328 1.4e-11 73.9 76 47.4
BraA09t41992Z Brassica rapa HOM05D005207 ORTHO05D024328 1.4e-11 73.9 76 47.4
A03p07940 Brassica napus HOM05D002922 ORTHO05D024472 2.4e-11 73.2 138 34.8
BcaB01g06028 Brassica carinata HOM05D005207 ORTHO05D016117 3.2e-11 72.8 84 46.4
BcaC07g42014 Brassica carinata HOM05D005207 ORTHO05D024328 3.2e-11 72.8 76 46.1
A03p02850 Brassica napus HOM05D005207 ORTHO05D016117 3.2e-11 72.8 84 46.4
C03p03250 Brassica napus HOM05D005207 ORTHO05D016117 3.2e-11 72.8 84 46.4
C03p03300 Brassica napus HOM05D005207 ORTHO05D016117 3.2e-11 72.8 84 46.4
C08p50700 Brassica napus HOM05D005207 ORTHO05D024328 3.2e-11 72.8 76 46.1
BolC3t12869H Brassica oleracea HOM05D005207 ORTHO05D016117 3.2e-11 72.8 84 46.4
BolC3t12873H Brassica oleracea HOM05D005207 ORTHO05D016117 3.2e-11 72.8 84 46.4
BolC8t52598H Brassica oleracea HOM05D005207 ORTHO05D024328 3.2e-11 72.8 76 46.1
BraA03t09649Z Brassica rapa HOM05D005207 ORTHO05D016117 3.2e-11 72.8 84 46.4
BcaB01g06058 Brassica carinata HOM05D005207 ORTHO05D039226 5.4e-11 72.0 96 40.6
BolC8t52195H Brassica oleracea HOM05D008530 ORTHO05D032716 5.4e-11 72.0 141 33.3
Thhalv10017937m.g Eutrema salsugineum HOM05D005207 ORTHO05D011102 7.0e-11 71.6 140 32.1
BcaB01g06024 Brassica carinata HOM05D005207 ORTHO05D010629 9.2e-11 71.2 76 47.4
BcaB06g28704 Brassica carinata HOM05D005207 ORTHO05D010629 9.2e-11 71.2 131 30.5
BcaB08g34294 Brassica carinata HOM05D008530 ORTHO05D011436 9.2e-11 71.2 192 30.2
BraA03t10119Z Brassica rapa HOM05D002922 ORTHO05D024472 9.2e-11 71.2 138 34.1
BolC6t35492H Brassica oleracea HOM05D002658 ORTHO05D003000 1.6e-10 70.5 72 45.8
BcaC05g26761 Brassica carinata HOM05D005207 ORTHO05D021650 2.7e-10 69.7 73 42.5
BcaC02g08027 Brassica carinata HOM05D005207 ORTHO05D010629 3.5e-10 69.3 191 28.3
BcaC08g43092 Brassica carinata HOM05D002658 ORTHO05D003000 6.0e-10 68.6 72 45.8
C06p03520 Brassica napus HOM05D002658 ORTHO05D003000 6.0e-10 68.6 72 45.8
BcaC08g47263 Brassica carinata HOM05D005207 ORTHO05D010629 1.3e-09 67.4 76 43.4
BcaB06g28876 Brassica carinata HOM05D005207 ORTHO05D010629 1.7e-09 67.0 71 52.1
BcaC05g26764 Brassica carinata HOM05D005207 ORTHO05D021650 1.7e-09 67.0 73 41.1
C04p68620 Brassica napus HOM05D005207 ORTHO05D010629 1.7e-09 67.0 113 35.4
BolC4t28368H Brassica oleracea HOM05D005207 ORTHO05D010629 1.7e-09 67.0 113 35.4
AL3G11550 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 2.3e-09 66.6 72 44.4
Carub.0003s0820 Capsella rubella HOM05D005207 ORTHO05D012773 2.3e-09 66.6 71 45.1
BcaB01g05983 Brassica carinata HOM05D005207 ORTHO05D039260 3.0e-09 66.2 66 51.5
A09p63050 Brassica napus HOM05D008530 ORTHO05D011436 3.0e-09 66.2 173 30.1
BraA09t41658Z Brassica rapa HOM05D008530 ORTHO05D011436 3.0e-09 66.2 173 30.1
BcaB06g29180 Brassica carinata HOM05D005207 ORTHO05D010629 3.9e-09 65.9 76 50.0
Sp1g35830 Schrenkiella parvula HOM05D002658 ORTHO05D003000 3.9e-09 65.9 72 44.4
BolC4t27457H Brassica oleracea HOM05D005207 ORTHO05D010629 6.6e-09 65.1 143 30.8
AL6G12860 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 1.1e-08 64.3 76 43.4
Thhalv10014517m.g Eutrema salsugineum HOM05D005207 ORTHO05D011436 1.1e-08 64.3 78 43.6
A05p20830 Brassica napus HOM05D002658 ORTHO05D003000 1.5e-08 63.9 72 44.4
A06p04110 Brassica napus HOM05D002658 ORTHO05D003000 1.5e-08 63.9 72 44.4
A06p04130 Brassica napus HOM05D000335 ORTHO05D003000 1.5e-08 63.9 72 44.4
C03p02980 Brassica napus HOM05D005207 ORTHO05D039260 1.5e-08 63.9 66 50.0
BraA05t20989Z Brassica rapa HOM05D002658 ORTHO05D003000 1.5e-08 63.9 72 44.4
BraA06t23617Z Brassica rapa HOM05D002658 ORTHO05D003000 1.5e-08 63.9 72 44.4
AT1G48920 Arabidopsis thaliana HOM05D002658 ORTHO05D003000 1.9e-08 63.5 82 41.5
BcaC05g27545 Brassica carinata HOM05D002658 ORTHO05D003000 3.3e-08 62.8 72 43.1
C05p35300 Brassica napus HOM05D002658 ORTHO05D003000 3.3e-08 62.8 72 43.1
BolC5t32244H Brassica oleracea HOM05D002658 ORTHO05D003000 3.3e-08 62.8 72 43.1
AT5G05430 Arabidopsis thaliana HOM05D005207 ORTHO05D011102 4.3e-08 62.4 98 40.8
Carub.0007s1576 Capsella rubella HOM05D005207 ORTHO05D010629 4.3e-08 62.4 76 42.1
BraA09t41662Z Brassica rapa HOM05D008530 ORTHO05D011436 5.6e-08 62.0 173 29.5
AL8G27750 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 7.3e-08 61.6 127 35.4
BcaC09g51786 Brassica carinata HOM05D002665 ORTHO05D020138 7.3e-08 61.6 189 30.2
C01p09020 Brassica napus HOM05D008530 ORTHO05D020138 7.3e-08 61.6 189 30.2
BolC1t00892H Brassica oleracea HOM05D008530 ORTHO05D020138 7.3e-08 61.6 189 30.2
CARHR038910 Cardamine hirsuta HOM05D002658 ORTHO05D003000 7.3e-08 61.6 76 42.1
BcaB07g33701 Brassica carinata HOM05D002658 ORTHO05D003000 1.2e-07 60.8 76 44.7
Thhalv10011361m.g Eutrema salsugineum HOM05D002658 ORTHO05D003000 1.2e-07 60.8 72 44.4
BcaB06g28377 Brassica carinata HOM05D005207 ORTHO05D010629 1.6e-07 60.5 69 46.4
BcaC07g41644 Brassica carinata HOM05D008530 ORTHO05D011436 1.6e-07 60.5 170 28.2
BcaC07g41650 Brassica carinata HOM05D008530 ORTHO05D011436 1.6e-07 60.5 173 28.3
C08p46510 Brassica napus HOM05D008530 ORTHO05D011436 1.6e-07 60.5 173 28.3
AL5G22900 Arabidopsis lyrata HOM05D025973 ORTHO05D012773 2.1e-07 60.1 76 44.7
A09p63010 Brassica napus HOM05D008530 ORTHO05D011436 2.1e-07 60.1 95 35.8
Aa31LG10G5000 Aethionema arabicum HOM05D002658 ORTHO05D003000 2.8e-07 59.7 73 37.0
BcaB02g11292 Brassica carinata HOM05D002658 ORTHO05D003000 2.8e-07 59.7 72 43.1
BcaC07g41646 Brassica carinata HOM05D008530 ORTHO05D011436 2.8e-07 59.7 173 28.9
C08p46470 Brassica napus HOM05D008530 ORTHO05D011436 2.8e-07 59.7 173 28.9
BcaC05g26763 Brassica carinata HOM05D005207 ORTHO05D021650 3.6e-07 59.3 70 40.0
Carub.0006s2942 Capsella rubella HOM05D008043 ORTHO05D010395 3.6e-07 59.3 67 47.8
THA.LOC104810678 Tarenaya hassleriana HOM05D002658 ORTHO05D003000 6.2e-07 58.5 73 39.7
Carub.0001s3809 Capsella rubella HOM05D002658 ORTHO05D003000 8.0e-07 58.2 76 40.8
BolC8t52194H Brassica oleracea HOM05D008530 ORTHO05D011436 1.1e-06 57.8 173 28.3
Aa31LG8G11830 Aethionema arabicum HOM05D005207 ORTHO05D011102 1.4e-06 57.4 76 36.8
AT3G18610 Arabidopsis thaliana HOM05D002658 ORTHO05D003000 1.4e-06 57.4 72 44.4
BraA01t00697Z Brassica rapa HOM05D008530 ORTHO05D020138 1.4e-06 57.4 170 28.8
vmacro10896 Vaccinium macrocarpon HOM05D002658 ORTHO05D003000 1.4e-06 57.4 177 21.5
Psat7g173280 Pisum sativum HOM05D002658 ORTHO05D003000 2.3e-06 56.6 160 25.0
A05p31000 Brassica napus HOM05D002658 ORTHO05D003000 3.1e-06 56.2 84 38.1
Mapoly0084s0037 Marchantia polymorpha HOM05D003897 ORTHO05D005095 3.1e-06 56.2 175 25.1
BcaNung01579 Brassica carinata HOM05D005207 ORTHO05D010629 4.0e-06 55.8 70 44.3
BolC4t27454H Brassica oleracea HOM05D007694 ORTHO05D041000 4.0e-06 55.8 86 34.9
Lj1g0013048 Lotus japonicus HOM05D002658 ORTHO05D003000 5.2e-06 55.5 73 38.4
Os04g0620700 Oryza sativa ssp. japonica HOM05D002658 ORTHO05D003000 5.2e-06 55.5 171 24.6
Nitab4.5_0002873g0020 Nicotiana tabacum HOM05D002658 ORTHO05D003000 6.8e-06 55.1 82 34.1
Potri.007G071100 Populus trichocarpa HOM05D002658 ORTHO05D003000 6.8e-06 55.1 163 24.5
AT1G72800 Arabidopsis thaliana HOM05D002658 ORTHO05D021408 8.9e-06 54.7 83 38.6
BcaB03g13542 Brassica carinata HOM05D005207 ORTHO05D095061 8.9e-06 54.7 155 32.9
C04p66560 Brassica napus HOM05D005207 ORTHO05D041593 8.9e-06 54.7 70 42.9
BolC4t28158H Brassica oleracea HOM05D005207 ORTHO05D041593 8.9e-06 54.7 70 42.9
Carub.0006s0326 Capsella rubella HOM05D005207 ORTHO05D012773 8.9e-06 54.7 71 39.4
Thhalv10020940m.g Eutrema salsugineum HOM05D002658 ORTHO05D003000 8.9e-06 54.7 170 26.5


User provided reference genes

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