Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31224 Brassica carinata HOM05D005817 ORTHO05D007140 3.4e-164 581.6 301 100.0
C07p33290 Brassica napus HOM05D005817 ORTHO05D007140 1.3e-155 553.1 296 97.3
BolC7t43840H Brassica oleracea HOM05D005817 ORTHO05D007140 1.3e-155 553.1 296 97.3
A06p43560 Brassica napus HOM05D005817 ORTHO05D007140 8.4e-155 550.4 296 96.3
BraA06t27241Z Brassica rapa HOM05D005817 ORTHO05D007140 5.1e-152 541.2 322 89.1
BcaC03g17157 Brassica carinata HOM05D005817 ORTHO05D007140 2.9e-147 525.4 298 91.9
Sp2g13800 Schrenkiella parvula HOM05D005817 ORTHO05D007140 3.8e-147 525.0 301 91.7
Thhalv10004677m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 1.3e-144 516.5 301 90.4
Carub.0005s0157 Capsella rubella HOM05D005817 ORTHO05D007140 8.4e-139 497.3 301 86.4
AT2G02570 Arabidopsis thaliana HOM05D005817 ORTHO05D007140 4.3e-135 485.0 301 84.1
C02p50820 Brassica napus HOM05D005817 ORTHO05D007140 4.3e-135 485.0 293 87.4
BolC2t11164H Brassica oleracea HOM05D005817 ORTHO05D007140 5.8e-132 474.6 297 86.2
THA.LOC104824089 Tarenaya hassleriana HOM05D005817 ORTHO05D007140 2.9e-123 445.7 289 79.2
Aa31LG2G7570 Aethionema arabicum HOM05D005817 ORTHO05D007140 3.5e-121 438.7 322 73.6
A02p33050 Brassica napus HOM05D005817 ORTHO05D007140 3.7e-118 428.7 296 80.1
AL5G11840 Arabidopsis lyrata HOM05D005817 ORTHO05D007140 5.5e-114 414.8 259 83.4
BraA02t08326Z Brassica rapa HOM05D005817 ORTHO05D007140 7.9e-113 411.0 263 83.7
CANSAT01G0715 Cannabis sativa HOM05D005817 ORTHO05D007140 1.8e-112 409.8 299 73.9
Ciclev10002025m.g Citrus clementina HOM05D005817 ORTHO05D007140 1.5e-111 406.8 297 73.7
QL02p103359 Quercus lobata HOM05D005817 ORTHO05D007140 9.7e-111 404.1 297 72.7
Gohir.D06G122800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 4.8e-110 401.7 288 74.3
Gohir.A06G115800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 6.3e-110 401.4 288 74.3
TWI14G0757 Tripterygium wilfordii HOM05D005817 ORTHO05D007140 6.3e-110 401.4 296 70.9
Thecc.06G019900 Theobroma cacao HOM05D005817 ORTHO05D007140 8.2e-110 401.0 288 74.3
CiPaw.06G176700 Carya illinoinensis HOM05D005817 ORTHO05D007140 1.4e-109 400.2 294 73.1
Gorai.010G142900 Gossypium raimondii HOM05D005817 ORTHO05D007140 1.4e-109 400.2 288 74.0
MD08G1248300 Malus domestica HOM05D005817 ORTHO05D007140 5.3e-109 398.3 303 70.3
Eucgr.I02797 Eucalyptus grandis HOM05D005817 ORTHO05D007140 1.2e-108 397.1 302 70.2
Atru.chr6.226 Acer truncatum HOM05D005817 ORTHO05D007140 2.6e-108 396.0 297 72.1
Lalb_Chr07g0176811 Lupinus albus HOM05D005817 ORTHO05D007140 2.6e-108 396.0 296 71.3
TPR.G6004 Trifolium pratense HOM05D005817 ORTHO05D007140 2.6e-108 396.0 295 70.2
MD15G1443200 Malus domestica HOM05D005817 ORTHO05D007140 4.5e-108 395.2 309 68.6
Duzib160G0844 Durio zibethinus HOM05D005817 ORTHO05D007140 1.0e-107 394.0 288 73.6
Lj4g0018327 Lotus japonicus HOM05D005817 ORTHO05D007140 1.7e-107 393.3 294 69.7
PGR142G3472 Punica granatum HOM05D005817 ORTHO05D007140 2.2e-107 392.9 293 71.7
Prupe.1G585700 Prunus persica HOM05D005817 ORTHO05D007140 2.9e-107 392.5 304 69.7
CSS0044256 Camellia sinensis var. sinensis HOM05D005817 ORTHO05D007140 5.0e-107 391.7 301 69.1
Psat4g000960 Pisum sativum HOM05D005817 ORTHO05D007140 5.0e-107 391.7 288 71.5
TAR376G0556 Trochodendron aralioides HOM05D005817 ORTHO05D007140 6.5e-107 391.3 296 73.0
CsaV3_5G027420 Cucumis sativus L. HOM05D005817 ORTHO05D007140 8.5e-107 391.0 294 70.4
Glyma.07G272500 Glycine max HOM05D005817 ORTHO05D007140 1.4e-106 390.2 292 70.5
CAN.G855.54 Capsicum annuum HOM05D005817 ORTHO05D007140 1.9e-106 389.8 309 71.5
TAR628G1209 Trochodendron aralioides HOM05D005817 ORTHO05D007140 1.9e-106 389.8 292 72.9
Solyc01g103020.4 Solanum lycopersicum HOM05D005817 ORTHO05D007140 3.2e-106 389.0 298 72.5
Ca_13529_v3 Cicer arietinum L. HOM05D005817 ORTHO05D007140 5.5e-106 388.3 296 70.3
Nitab4.5_0007689g0010 Nicotiana tabacum HOM05D005817 ORTHO05D007140 5.5e-106 388.3 308 70.5
PGSC0003DMG400020713 Solanum tuberosum HOM05D005817 ORTHO05D007140 7.2e-106 387.9 301 72.1
Aqoxy6G00025 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 1.6e-105 386.7 294 70.7
COL.COLO4_31118 Corchorus olitorius HOM05D005817 ORTHO05D007140 1.6e-105 386.7 325 67.1
PSO017G5300 Papaver somniferum HOM05D005817 ORTHO05D007140 1.6e-105 386.7 299 71.9
Cc02_g23610 Coffea canephora HOM05D005817 ORTHO05D007140 2.7e-105 386.0 293 70.0
PSO170G5162 Papaver somniferum HOM05D005817 ORTHO05D007140 4.7e-105 385.2 299 71.6
Oeu028475.1 Olea europaea HOM05D005817 ORTHO05D007140 6.1e-105 384.8 298 69.8
Nn5g27184 Nelumbo nucifera HOM05D005817 ORTHO05D007140 2.3e-104 382.9 290 71.0
Oeu028476.1 Olea europaea HOM05D005817 ORTHO05D007140 2.3e-104 382.9 298 69.5
Actinidia01635 Actinidia chinensis HOM05D005817 ORTHO05D007140 5.1e-104 381.7 306 68.3
Hma1.2p1_0052F.1_g030020 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 6.7e-104 381.3 301 69.1
FvH4_5g27830 Fragaria vesca HOM05D005817 ORTHO05D007140 2.0e-103 379.8 305 66.2
FAN18G1253 Fragaria x ananassa HOM05D005817 ORTHO05D007140 2.0e-103 379.8 305 66.2
arahy.Tifrunner.gnm1.ann1.NEQE4P Arachis hypogaea HOM05D005817 ORTHO05D007140 4.4e-103 378.6 314 65.6
Phvul.003G075900 Phaseolus vulgaris HOM05D005817 ORTHO05D007140 4.4e-103 378.6 296 69.3
arahy.Tifrunner.gnm1.ann1.86KQ48 Arachis hypogaea HOM05D005817 ORTHO05D007140 5.7e-103 378.3 314 65.6
RcHm_v2.0_Chr7g0219661 Rosa chinensis HOM05D005817 ORTHO05D007140 7.4e-103 377.9 303 67.3
EL10Ac6g13990 Beta vulgaris HOM05D005817 ORTHO05D007140 9.7e-103 377.5 302 67.2
SGA_v2.0_scaffold8G04460 Striga asiatica HOM05D005817 ORTHO05D007140 9.7e-103 377.5 307 67.8
HanXRQChr15g0469671 Helianthus annuus HOM05D005817 ORTHO05D007140 2.8e-102 375.9 314 67.5
Medtr4g134630 Medicago truncatula HOM05D005817 ORTHO05D007140 2.8e-102 375.9 287 67.6
Sed0006174 Sechium edule HOM05D005817 ORTHO05D007140 3.7e-102 375.6 290 69.7
CDE07G1199 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 1.8e-101 373.2 285 70.9
Sabra01G0174300 Salix brachista HOM05D005817 ORTHO05D007140 6.9e-101 371.3 311 67.8
Lsat_1_v5_gn_9_83341 Lactuca sativa HOM05D005817 ORTHO05D007140 1.2e-100 370.5 312 68.3
Ah.03g136770 Amaranthus hybridus HOM05D005817 ORTHO05D007140 1.5e-100 370.2 320 62.8
Haze_09983 Corylus avellana HOM05D005817 ORTHO05D007140 1.5e-100 370.2 359 59.3
Migut.N00865 Erythranthe guttata HOM05D005817 ORTHO05D007140 1.0e-99 367.5 309 66.3
ATR1089G128 Amborella trichopoda HOM05D005817 ORTHO05D007140 1.0e-96 357.5 299 66.2
Lj9C259G5 Lonicera japonica HOM05D001465 ORTHO05D001434 3.0e-96 355.9 275 70.2
Rhsim05G0115500 Rhododendron simsii HOM05D005817 ORTHO05D007140 1.5e-95 353.6 352 58.2
FAN04G1604 Fragaria x ananassa HOM05D005817 ORTHO05D007140 4.8e-94 348.6 373 54.2
Hund15375 Selenicereus undatus HOM05D005817 ORTHO05D007140 2.4e-93 346.3 266 68.0
vmacro19830 Vaccinium macrocarpon HOM05D005817 ORTHO05D007140 4.1e-93 345.5 283 66.1
AUR62043876 Chenopodium quinoa HOM05D005817 ORTHO05D007140 1.2e-92 344.0 275 67.6
CDE08G0344 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 1.0e-91 340.9 293 64.5
ClCG11G000310 Citrullus lanatus HOM05D005817 ORTHO05D007140 3.2e-90 335.9 304 62.8
Peaxi162Scf00011g01920 Petunia axillaris HOM05D005817 ORTHO05D007140 4.2e-90 335.5 345 57.4
ECA236G3641 Erigeron canadensis HOM05D000284 ORTHO05D000805 3.6e-89 332.4 287 65.5
Manes.07G030600 Manihot esculenta HOM05D005817 ORTHO05D007140 3.6e-89 332.4 244 72.1
Dinv29679 Davidia involucrata HOM05D005817 ORTHO05D007140 4.7e-89 332.0 250 70.8
Manes.10G106400 Manihot esculenta HOM05D005817 ORTHO05D007140 6.1e-89 331.6 243 72.8
Mapoly0107s0026 Marchantia polymorpha HOM05D005817 ORTHO05D007140 1.0e-88 330.9 293 62.5
Potri.004G229200 Populus trichocarpa HOM05D005817 ORTHO05D007140 1.2e-87 327.4 245 73.1
GSVIVG01023145001 Vitis vinifera HOM05D005817 ORTHO05D007140 1.2e-87 327.4 249 70.7
Glyma.17G001900 Glycine max HOM05D005817 ORTHO05D007140 4.4e-87 325.5 247 69.2
SHI04993 Sapria himalayana HOM05D005817 ORTHO05D007140 2.8e-86 322.8 311 57.6
FAN08G2336 Fragaria x ananassa HOM05D005817 ORTHO05D007140 2.4e-85 319.7 376 53.5
MBI06_g16620_MAGBIO Magnolia biondii HOM05D005817 ORTHO05D007140 2.0e-84 316.6 254 68.5
unitig_22.g6849 Utricularia gibba HOM05D005817 ORTHO05D007140 3.5e-84 315.8 338 55.6
Sopen01g045430 Solanum pennellii HOM05D005817 ORTHO05D007140 3.8e-83 312.4 207 78.3
AUR62032450 Chenopodium quinoa HOM05D005817 ORTHO05D007140 3.2e-82 309.3 280 61.8
Os08g0109900 Oryza sativa ssp. japonica HOM05D005817 ORTHO05D007140 8.0e-81 304.7 248 67.7
Duzib235G1547 Durio zibethinus HOM05D005817 ORTHO05D007140 4.0e-80 302.4 241 70.5
CDE04G1950 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 2.0e-79 300.1 248 67.3
Nitab4.5_0003247g0070 Nicotiana tabacum HOM05D005817 ORTHO05D007140 5.7e-79 298.5 249 68.7
Sc03g0006230 Simmondsia chinensis HOM05D005817 ORTHO05D007140 9.8e-79 297.7 199 77.4
Actinidia26194 Actinidia chinensis HOM05D005817 ORTHO05D007140 2.8e-78 296.2 316 57.6
VMungo1215G1434 Vigna mungo HOM05D005817 ORTHO05D007140 1.4e-77 293.9 195 75.9
Pp3c10_3580 Physcomitrium patens HOM05D005817 ORTHO05D007140 7.0e-77 291.6 322 54.0
Lj5C284T7 Lonicera japonica HOM05D005817 ORTHO05D007140 8.6e-75 284.6 211 70.1
AagrBONN_evm.TU.Sc2ySwM_117.207 Anthoceros agrestis HOM05D005817 ORTHO05D007140 4.2e-74 282.3 291 54.0
Aqoxy385s001 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 1.2e-73 280.8 291 57.4
Cpa.g.sc173.14 Carica papaya HOM05D005817 ORTHO05D007140 2.2e-70 270.0 239 62.3
HPP92_002041 Vanilla planifolia HOM05D005817 ORTHO05D007140 1.1e-69 267.7 264 60.2
Hma1.2p1_0052F.1_g030010 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 2.7e-68 263.1 179 75.4
CDE02G1227 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 3.3e-66 256.1 299 51.8
MSTRG.27880 Avicennia marina HOM05D005817 ORTHO05D007140 1.0e-64 251.1 230 63.0
SMO117G0163 Selaginella moellendorffii HOM05D005817 ORTHO05D007140 6.8e-64 248.4 195 65.6
Pp3c14_9240 Physcomitrium patens HOM05D005817 ORTHO05D007140 8.9e-64 248.1 292 51.7
Pp3c10_3582 Physcomitrium patens HOM05D005817 ORTHO05D007140 1.2e-63 247.7 221 61.5
CBR_g40810 Chara braunii HOM05D005817 ORTHO05D007140 3.4e-63 246.1 347 45.8
Pp3c1_22040 Physcomitrium patens HOM05D005817 ORTHO05D007140 9.8e-63 244.6 289 51.2
Lalb_Chr12g0195861 Lupinus albus HOM05D005817 ORTHO05D007140 5.0e-59 232.3 165 72.7
RcHm_v2.0_Chr5g0068831 Rosa chinensis HOM05D005817 ORTHO05D007140 3.4e-55 219.5 155 75.5
MSTRG.601 Avicennia marina HOM05D005817 ORTHO05D007140 1.3e-54 217.6 208 59.1
Dinv29634 Davidia involucrata HOM05D005817 ORTHO05D007140 1.5e-47 194.1 157 66.2
Zm00001eb174130 Zea mays HOM05D005817 ORTHO05D007140 4.4e-47 192.6 132 77.3
VMungo0766G0001 Vigna mungo HOM05D005817 ORTHO05D007140 3.8e-30 136.3 138 58.7
MCO12G229 Micromonas commoda HOM05D005817 ORTHO05D007140 1.2e-28 131.3 299 32.4
Cre02.g106550 Chlamydomonas reinhardtii HOM05D005817 ORTHO05D007140 4.8e-25 119.4 328 32.3
CARHR145100 Cardamine hirsuta HOM05D005817 ORTHO05D007140 1.2e-20 104.8 68 77.9
PRCOL_00002712 Prasinoderma coloniale HOM05D005817 ORTHO05D007140 9.6e-18 95.1 324 29.6
VMungo1148G0001 Vigna mungo HOM05D005817 ORTHO05D007140 2.1e-17 94.0 83 67.5
Thhalv10005196m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 1.1e-13 81.6 52 84.6
SEGI_07435 Sequoiadendron giganteum HOM05D005817 ORTHO05D007140 9.3e-13 78.6 87 51.7
FvH4_3g40414 Fragaria vesca HOM05D005817 ORTHO05D007140 5.1e-11 72.8 50 66.0
Lalb_Chr12g0195851 Lupinus albus HOM05D005817 ORTHO05D007140 1.6e-09 67.8 57 63.2
COL.COLO4_38165 Corchorus olitorius HOM05D011921 ORTHO05D160408 9.0e-08 62.0 178 34.8


User provided reference genes

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