Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g30930 Brassica carinata HOM05D005111 ORTHO05D006650 2.0e-87 325.9 181 100.0
BcaC06g33750 Brassica carinata HOM05D005111 ORTHO05D006650 2.6e-74 282.3 183 84.7
C07p37330 Brassica napus HOM05D005111 ORTHO05D006650 2.6e-74 282.3 183 84.7
BolC7t44243H Brassica oleracea HOM05D005111 ORTHO05D006650 2.6e-74 282.3 183 84.7
A06p40670 Brassica napus HOM05D005111 ORTHO05D006650 1.8e-72 276.2 183 82.0
BraA06t26987Z Brassica rapa HOM05D005111 ORTHO05D006650 1.8e-72 276.2 183 82.0
BcaC06g30932 Brassica carinata HOM05D005111 ORTHO05D006650 1.5e-66 256.5 191 74.3
Sp2g17070 Schrenkiella parvula HOM05D005111 ORTHO05D006650 7.4e-66 254.2 182 73.1
Thhalv10005667m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 6.3e-65 251.1 182 72.0
Aa31LG2G4740 Aethionema arabicum HOM05D005111 ORTHO05D006650 1.2e-63 246.9 182 70.9
AL5G17640 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 2.5e-61 239.2 181 67.4
THA.LOC104823919 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 1.0e-59 233.8 182 67.6
AL7G49820 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 2.3e-59 232.6 182 66.5
AT5G40190 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 2.3e-59 232.6 182 66.5
Carub.0007s3546 Capsella rubella HOM05D005111 ORTHO05D006650 1.5e-58 229.9 182 65.9
THA.LOC104805409 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 2.6e-58 229.2 180 66.1
CARHR261950 Cardamine hirsuta HOM05D005111 ORTHO05D006650 3.3e-58 228.8 182 65.4
Cfa007459 Carpinus fangiana HOM05D005111 ORTHO05D006650 7.5e-58 227.6 182 65.4
AT3G28140 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 3.7e-57 225.3 183 66.1
Carub.0005s0666 Capsella rubella HOM05D005111 ORTHO05D006650 1.1e-56 223.8 177 66.7
Dinv35035 Davidia involucrata HOM05D005111 ORTHO05D006650 1.1e-56 223.8 182 63.2
Thhalv10027951m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 1.1e-56 223.8 180 64.4
Lsat_1_v5_gn_8_69941 Lactuca sativa HOM05D005111 ORTHO05D006650 1.8e-56 223.0 182 64.3
ECA246G3776 Erigeron canadensis HOM05D005111 ORTHO05D006650 2.4e-56 222.6 182 64.3
FAN05G4920 Fragaria x ananassa HOM05D005111 ORTHO05D006650 2.4e-56 222.6 182 63.7
CSS0013590 Camellia sinensis var. sinensis HOM05D005111 ORTHO05D006650 3.1e-56 222.2 182 63.2
Hma1.2p1_0697F.1_g204930 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 3.1e-56 222.2 182 62.6
Haze_14637 Corylus avellana HOM05D005111 ORTHO05D006650 5.3e-56 221.5 178 65.7
Prupe.3G280400 Prunus persica HOM05D005111 ORTHO05D006650 5.3e-56 221.5 182 63.2
FAN02G1641 Fragaria x ananassa HOM05D005111 ORTHO05D006650 7.0e-56 221.1 182 63.2
FAN09G2278 Fragaria x ananassa HOM05D005111 ORTHO05D006650 7.0e-56 221.1 182 63.2
Manes.15G180000 Manihot esculenta HOM05D005111 ORTHO05D006650 7.0e-56 221.1 182 63.7
RcHm_v2.0_Chr2g0170641 Rosa chinensis HOM05D005111 ORTHO05D006650 7.0e-56 221.1 182 62.6
AUR62032092 Chenopodium quinoa HOM05D005111 ORTHO05D006650 1.6e-55 219.9 182 62.6
Lj7P412T18 Lonicera japonica HOM05D005111 ORTHO05D006650 2.0e-55 219.5 182 63.2
TWI56G1475 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 2.0e-55 219.5 182 63.2
Actinidia28460 Actinidia chinensis HOM05D005111 ORTHO05D006650 3.5e-55 218.8 182 62.6
Actinidia36066 Actinidia chinensis HOM05D005111 ORTHO05D006650 3.5e-55 218.8 182 62.6
Gorai.006G028500 Gossypium raimondii HOM05D005111 ORTHO05D006650 4.5e-55 218.4 182 60.4
CiPaw.04G023100 Carya illinoinensis HOM05D005111 ORTHO05D006650 5.9e-55 218.0 182 62.6
Dinv33518 Davidia involucrata HOM05D005111 ORTHO05D006650 5.9e-55 218.0 182 63.2
Duzib147G1596 Durio zibethinus HOM05D005111 ORTHO05D006650 5.9e-55 218.0 182 62.1
HanXRQChr15g0474461 Helianthus annuus HOM05D005111 ORTHO05D006650 5.9e-55 218.0 180 63.3
CANSAT64G0323 Cannabis sativa HOM05D005111 ORTHO05D006650 7.7e-55 217.6 182 62.6
COL.COLO4_32007 Corchorus olitorius HOM05D005111 ORTHO05D006650 1.0e-54 217.2 182 61.0
MD17G1038600 Malus domestica HOM05D005111 ORTHO05D006650 1.0e-54 217.2 182 61.5
DCAR_013972 Daucus carota HOM05D005111 ORTHO05D006650 1.3e-54 216.9 182 62.6
Gohir.D09G024300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.3e-54 216.9 182 60.4
GSVIVG01032518001 Vitis vinifera HOM05D005111 ORTHO05D006650 1.3e-54 216.9 182 62.1
Thecc.04G004900 Theobroma cacao HOM05D005111 ORTHO05D006650 1.7e-54 216.5 182 62.1
Manes.17G124400 Manihot esculenta HOM05D005111 ORTHO05D006650 2.2e-54 216.1 182 61.5
MELO3C021519.2 Cucumis melo HOM05D005111 ORTHO05D006650 2.9e-54 215.7 182 63.2
CsaV3_5G037360 Cucumis sativus L. HOM05D005111 ORTHO05D006650 2.9e-54 215.7 182 63.2
Duzib264G0177 Durio zibethinus HOM05D005111 ORTHO05D006650 2.9e-54 215.7 182 61.0
QL02p077635 Quercus lobata HOM05D005111 ORTHO05D006650 5.0e-54 214.9 182 62.1
MD09G1037200 Malus domestica HOM05D005111 ORTHO05D006650 8.5e-54 214.2 182 60.4
Potri.001G350300 Populus trichocarpa HOM05D005111 ORTHO05D006650 8.5e-54 214.2 183 63.4
TWI36G0044 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 8.5e-54 214.2 182 61.5
FvH4_6g50340 Fragaria vesca HOM05D005111 ORTHO05D006650 1.1e-53 213.8 177 63.3
FAN14G5899 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.1e-53 213.8 177 63.3
ClCG09G018710 Citrullus lanatus HOM05D005111 ORTHO05D006650 1.5e-53 213.4 182 62.1
ClCG09G018770 Citrullus lanatus HOM05D005111 ORTHO05D006650 1.5e-53 213.4 182 62.1
Rhsim08G0056700 Rhododendron simsii HOM05D005111 ORTHO05D006650 1.5e-53 213.4 182 61.5
Gohir.A10G101300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.5e-53 212.6 182 60.4
Gohir.D10G087701 Gossypium hirsutum HOM05D005111 ORTHO05D006650 3.2e-53 212.2 182 60.4
Gorai.011G096000 Gossypium raimondii HOM05D005111 ORTHO05D006650 3.2e-53 212.2 182 60.4
Sabra16G0229800 Salix brachista HOM05D005111 ORTHO05D006650 4.2e-53 211.8 183 62.8
Sed0001363 Sechium edule HOM05D005111 ORTHO05D006650 4.2e-53 211.8 182 62.1
Sed0025070 Sechium edule HOM05D005111 ORTHO05D006650 4.2e-53 211.8 182 62.1
EL10Ac2g03364 Beta vulgaris HOM05D005111 ORTHO05D006650 5.5e-53 211.5 178 61.8
TAR622G0537 Trochodendron aralioides HOM05D005111 ORTHO05D006650 5.5e-53 211.5 182 61.0
Gohir.D04G053100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.2e-52 210.3 182 59.3
Gorai.012G059600 Gossypium raimondii HOM05D005111 ORTHO05D006650 1.2e-52 210.3 182 59.3
CiPaw.03G035600 Carya illinoinensis HOM05D005111 ORTHO05D006650 1.6e-52 209.9 182 61.5
Gohir.A05G361100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.6e-52 209.9 182 59.3
PGR083G2413 Punica granatum HOM05D005111 ORTHO05D006650 2.1e-52 209.5 180 62.2
Oeu047328.1 Olea europaea HOM05D005111 ORTHO05D006650 2.7e-52 209.1 183 59.0
Ah.16g106920 Amaranthus hybridus HOM05D005111 ORTHO05D006650 3.6e-52 208.8 182 57.7
Nn3g16957 Nelumbo nucifera HOM05D005111 ORTHO05D006650 4.7e-52 208.4 182 60.4
Cc07_g02510 Coffea canephora HOM05D005111 ORTHO05D006650 6.1e-52 208.0 178 62.9
Aqoxy3G00932 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 8.0e-52 207.6 181 60.2
CDE10G0493 Ceratophyllum demersum HOM05D005111 ORTHO05D006650 8.0e-52 207.6 179 59.8
Ciclev10016872m.g Citrus clementina HOM05D005111 ORTHO05D006650 1.4e-51 206.8 182 58.8
Nitab4.5_0000632g0170 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.4e-51 206.8 182 57.7
Potri.017G073800 Populus trichocarpa HOM05D005111 ORTHO05D006650 1.4e-51 206.8 178 60.7
Nitab4.5_0000844g0360 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.8e-51 206.5 182 57.7
Peaxi162Scf00036g00163 Petunia axillaris HOM05D005111 ORTHO05D006650 2.3e-51 206.1 182 58.8
TAR374G1688 Trochodendron aralioides HOM05D005111 ORTHO05D006650 2.3e-51 206.1 182 59.9
Atru.chr6.2171 Acer truncatum HOM05D005111 ORTHO05D006650 4.0e-51 205.3 182 57.7
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 1.2e-50 203.8 177 59.9
Solyc02g081950.4 Solanum lycopersicum HOM05D005111 ORTHO05D006650 1.2e-50 203.8 182 58.2
Sopen02g026580 Solanum pennellii HOM05D005111 ORTHO05D006650 1.5e-50 203.4 182 57.7
SEGI_23218 Sequoiadendron giganteum HOM05D005111 ORTHO05D006650 2.0e-50 203.0 182 58.2
CAN.G809.38 Capsicum annuum HOM05D005111 ORTHO05D006650 2.6e-50 202.6 182 58.2
Nn4g22869 Nelumbo nucifera HOM05D005111 ORTHO05D006650 2.6e-50 202.6 179 60.3
PGSC0003DMG400007321 Solanum tuberosum HOM05D005111 ORTHO05D006650 2.6e-50 202.6 182 57.7
SalBow1G6258 Salvia bowleyana HOM05D005111 ORTHO05D006650 7.5e-50 201.1 177 58.8
MSTRG.3306 Avicennia marina HOM05D005111 ORTHO05D006650 9.8e-50 200.7 180 58.9
Eucgr.J02178 Eucalyptus grandis HOM05D005111 ORTHO05D006650 1.3e-49 200.3 182 57.1
Nitab4.5_0000389g0080 Nicotiana tabacum HOM05D005111 ORTHO05D006650 2.2e-49 199.5 182 57.7
PSO478G1103 Papaver somniferum HOM05D005111 ORTHO05D006650 2.8e-49 199.1 182 59.9
Hma1.2p1_2931F.1_g330500 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 4.8e-49 198.4 182 55.5
Nitab4.5_0000005g0410 Nicotiana tabacum HOM05D005111 ORTHO05D006650 4.8e-49 198.4 182 57.1
Migut.H00147 Erythranthe guttata HOM05D005111 ORTHO05D006650 8.3e-49 197.6 180 56.1
Glyma.19G011900 Glycine max HOM05D005111 ORTHO05D006650 8.3e-49 197.6 182 57.7
Lj2g0005029 Lotus japonicus HOM05D005111 ORTHO05D006650 8.3e-49 197.6 175 60.0
unitig_744.g24353 Utricularia gibba HOM05D005111 ORTHO05D006650 8.3e-49 197.6 179 57.5
Hma1.2p1_0967F.1_g242385 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 1.4e-48 196.8 182 55.5
Glyma.19G012000 Glycine max HOM05D005111 ORTHO05D006650 1.8e-48 196.4 180 58.3
VMungo0464G0112 Vigna mungo HOM05D005111 ORTHO05D006650 2.4e-48 196.1 183 55.7
PSO017G5141 Papaver somniferum HOM05D005111 ORTHO05D006650 5.4e-48 194.9 182 58.8
MSTRG.15504 Avicennia marina HOM05D005111 ORTHO05D006650 7.0e-48 194.5 180 57.2
VMungo0464G1864 Vigna mungo HOM05D005111 ORTHO05D006650 1.2e-47 193.7 183 55.2
Migut.K01364 Erythranthe guttata HOM05D005111 ORTHO05D006650 1.6e-47 193.4 179 59.2
SGA_v2.0_scaffold205G41716 Striga asiatica HOM05D005111 ORTHO05D006650 1.6e-47 193.4 178 56.7
SGA_v2.0_scaffold30G12485 Striga asiatica HOM05D005111 ORTHO05D006650 1.6e-47 193.4 178 57.9
SalBow7G0796 Salvia bowleyana HOM05D005111 ORTHO05D006650 2.0e-47 193.0 177 58.2
Glyma.13G070800 Glycine max HOM05D005111 ORTHO05D006650 2.7e-47 192.6 179 57.0
Phvul.004G019100 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 3.5e-47 192.2 183 54.6
Phvul.004G019200 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 5.9e-47 191.4 183 54.1
Sc20g0002810 Simmondsia chinensis HOM05D005111 ORTHO05D006650 1.3e-46 190.3 170 60.6
Aqoxy3G03068 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 3.8e-46 188.7 182 56.6
arahy.Tifrunner.gnm1.ann1.68QD6J Arachis hypogaea HOM05D005111 ORTHO05D006650 9.5e-45 184.1 180 57.8
CiPaw.06G158200 Carya illinoinensis HOM05D005111 ORTHO05D006650 4.7e-44 181.8 182 53.3
Ca_04214_v3 Cicer arietinum L. HOM05D005111 ORTHO05D006650 4.7e-44 181.8 179 54.7
Lalb_Chr02g0159721 Lupinus albus HOM05D005111 ORTHO05D006650 4.7e-44 181.8 186 51.6
Sp7g01780 Schrenkiella parvula HOM05D005111 ORTHO05D006650 1.0e-43 180.6 180 55.6
Psat1g060720 Pisum sativum HOM05D005111 ORTHO05D006650 1.8e-43 179.9 177 55.9
TPR.G2260 Trifolium pratense HOM05D005111 ORTHO05D006650 2.3e-43 179.5 179 54.2
Medtr6g007773 Medicago truncatula HOM05D005111 ORTHO05D006650 5.7e-42 174.9 180 52.8
Actinidia33968 Actinidia chinensis HOM05D005111 ORTHO05D000390 9.8e-42 174.1 181 51.4
ATR1149G112 Amborella trichopoda HOM05D005111 ORTHO05D006650 2.3e-38 162.9 176 53.4
Cpa.g.sc286.5 Carica papaya HOM05D005111 ORTHO05D006650 9.5e-37 157.5 166 53.0
Os09g0375400 Oryza sativa ssp. japonica HOM05D005111 ORTHO05D006650 6.1e-36 154.8 186 51.6
Zm00001eb098850 Zea mays HOM05D005111 ORTHO05D006650 4.6e-31 138.7 197 44.7
SMO367G0111 Selaginella moellendorffii HOM05D005111 ORTHO05D006650 9.2e-24 114.4 183 34.4
Gohir.A09G025000 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.1e-23 113.2 121 52.1
FAN09G1763 Fragaria x ananassa HOM05D005111 ORTHO05D006650 4.6e-23 112.1 115 52.2
Ah.07g198430 Amaranthus hybridus HOM05D005111 ORTHO05D003582 9.5e-21 104.4 158 41.1
Nn8g40738 Nelumbo nucifera HOM05D005111 ORTHO05D006650 8.1e-20 101.3 71 70.4
BcaC03g17502 Brassica carinata HOM05D005111 ORTHO05D039329 1.6e-15 87.0 52 73.1
A02p35780 Brassica napus HOM05D005111 ORTHO05D006650 4.3e-13 79.0 54 64.8
BraA02t08578Z Brassica rapa HOM05D000028 ORTHO05D000390 4.3e-13 79.0 54 64.8
CARHR149780 Cardamine hirsuta HOM05D005111 ORTHO05D006650 1.1e-11 74.3 99 45.5
Actinidia27813 Actinidia chinensis HOM05D005111 ORTHO05D006650 2.4e-11 73.2 108 44.4
BcaC06g33752 Brassica carinata HOM05D005111 ORTHO05D093848 3.4e-10 69.3 38 86.8


User provided reference genes

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