Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g29203 Brassica carinata HOM05D003885 ORTHO05D004623 1.2e-108 396.7 227 100.0
C05p54750 Brassica napus HOM05D003885 ORTHO05D004623 1.1e-106 390.2 233 97.4
BolC5t34149H Brassica oleracea HOM05D003885 ORTHO05D004623 1.1e-106 390.2 233 97.4
A05p36370 Brassica napus HOM05D003885 ORTHO05D004623 6.0e-105 384.4 233 95.7
BraA05t22437Z Brassica rapa HOM05D003885 ORTHO05D004623 6.0e-105 384.4 233 95.7
BolC1t05136H Brassica oleracea HOM05D003885 ORTHO05D004623 1.5e-103 379.8 233 94.8
BcaB06g25479 Brassica carinata HOM05D003885 ORTHO05D004623 2.5e-103 379.0 233 94.0
A01p40350 Brassica napus HOM05D003885 ORTHO05D004623 7.3e-103 377.5 233 95.3
BraA01t04070Z Brassica rapa HOM05D003885 ORTHO05D004623 7.3e-103 377.5 233 95.3
BolC3t16892H Brassica oleracea HOM05D003885 ORTHO05D004623 9.6e-103 377.1 233 94.8
A03p38080 Brassica napus HOM05D003885 ORTHO05D004623 2.1e-102 375.9 233 94.4
BraA03t12961Z Brassica rapa HOM05D003885 ORTHO05D004623 2.1e-102 375.9 233 94.4
Thhalv10021450m.g Eutrema salsugineum HOM05D003885 ORTHO05D004623 1.4e-101 373.2 233 92.3
Sp3g11380 Schrenkiella parvula HOM05D003885 ORTHO05D004623 2.4e-101 372.5 233 92.7
BcaB04g18746 Brassica carinata HOM05D003885 ORTHO05D004623 4.0e-101 371.7 231 93.1
C01p51880 Brassica napus HOM05D003885 ORTHO05D004623 2.0e-100 369.4 233 92.7
Carub.0003s1256 Capsella rubella HOM05D003885 ORTHO05D004623 6.4e-99 364.4 233 91.8
AL3G24950 Arabidopsis lyrata HOM05D003885 ORTHO05D004623 8.4e-99 364.0 232 90.9
CARHR087790 Cardamine hirsuta HOM05D003885 ORTHO05D004623 1.4e-98 363.2 233 91.4
Aa31LG8G410 Aethionema arabicum HOM05D003885 ORTHO05D004623 1.2e-97 360.1 233 89.7
AT3G13200 Arabidopsis thaliana HOM05D003885 ORTHO05D004623 1.2e-97 360.1 233 90.6
THA.LOC104822723 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 7.1e-90 334.3 233 85.4
C03p46210 Brassica napus HOM05D003885 ORTHO05D004623 2.5e-87 325.9 233 85.8
THA.LOC104815689 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 4.0e-85 318.5 236 81.4
Actinidia30379 Actinidia chinensis HOM05D003885 ORTHO05D004623 7.6e-84 314.3 233 78.5
Potri.001G370366 Populus trichocarpa HOM05D003885 ORTHO05D004623 7.6e-84 314.3 233 79.4
Haze_09860 Corylus avellana HOM05D003885 ORTHO05D004623 1.7e-83 313.2 233 77.7
Ah.06g181560 Amaranthus hybridus HOM05D003885 ORTHO05D004623 3.8e-83 312.0 234 77.8
CANSAT56G2895 Cannabis sativa HOM05D003885 ORTHO05D004623 3.8e-83 312.0 233 80.3
Nn1g07757 Nelumbo nucifera HOM05D003885 ORTHO05D004623 3.8e-83 312.0 233 78.5
Ah.13g073470 Amaranthus hybridus HOM05D003885 ORTHO05D004623 6.4e-83 311.2 236 77.1
CSS0008032 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 6.4e-83 311.2 233 76.8
CSS0014433 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 6.4e-83 311.2 233 76.8
TAR629G2602 Trochodendron aralioides HOM05D003885 ORTHO05D004623 1.1e-82 310.5 232 75.4
THA.LOC104810295 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 2.4e-82 309.3 233 79.8
Cfa016929 Carpinus fangiana HOM05D003885 ORTHO05D004623 4.2e-82 308.5 233 76.8
Atru.chr2.3832 Acer truncatum HOM05D003885 ORTHO05D004623 7.1e-82 307.8 233 79.0
COL.COLO4_07729 Corchorus olitorius HOM05D003885 ORTHO05D004623 1.2e-81 307.0 233 76.8
Prupe.6G027200 Prunus persica HOM05D003885 ORTHO05D004623 1.6e-81 306.6 234 76.1
TWI39G1241 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 1.6e-81 306.6 232 75.4
ClCG10G004480 Citrullus lanatus HOM05D003885 ORTHO05D004623 3.5e-81 305.4 233 77.3
Os06g0106100 Oryza sativa ssp. japonica HOM05D003885 ORTHO05D004623 3.5e-81 305.4 234 74.4
TAR627G0008 Trochodendron aralioides HOM05D003885 ORTHO05D004623 3.5e-81 305.4 232 75.0
Lj1g0011673 Lotus japonicus HOM05D003885 ORTHO05D004623 4.6e-81 305.1 232 76.7
Lj4g0022976 Lotus japonicus HOM05D003885 ORTHO05D004623 4.6e-81 305.1 232 76.3
FAN14G2004 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.8e-80 303.1 235 76.2
Gorai.013G150700 Gossypium raimondii HOM05D003885 ORTHO05D004623 1.8e-80 303.1 233 76.8
Rhsim06G0232400 Rhododendron simsii HOM05D003885 ORTHO05D004623 1.8e-80 303.1 247 71.7
TPR.G2621 Trifolium pratense HOM05D003885 ORTHO05D004623 2.3e-80 302.8 233 73.8
Manes.03G143400 Manihot esculenta HOM05D003885 ORTHO05D004623 2.5e-79 299.3 233 76.4
Cc05_g15250 Coffea canephora HOM05D003885 ORTHO05D004623 7.4e-79 297.7 233 77.3
Duzib213G0370 Durio zibethinus HOM05D003885 ORTHO05D004623 9.6e-79 297.4 233 75.5
Gohir.D13G134400 Gossypium hirsutum HOM05D003885 ORTHO05D004623 9.6e-79 297.4 233 76.0
Gohir.A13G131100 Gossypium hirsutum HOM05D003885 ORTHO05D004623 1.3e-78 297.0 233 76.0
Sed0004751 Sechium edule HOM05D003885 ORTHO05D004623 1.3e-78 297.0 230 76.5
Hund01874 Selenicereus undatus HOM05D003885 ORTHO05D004623 1.6e-78 296.6 234 76.9
Hund01875 Selenicereus undatus HOM05D003885 ORTHO05D004623 2.1e-78 296.2 233 76.8
Ciclev10009386m.g Citrus clementina HOM05D003885 ORTHO05D004623 2.8e-78 295.8 233 76.0
FAN14G0574 Fragaria x ananassa HOM05D003885 ORTHO05D004623 3.7e-78 295.4 235 76.6
Thecc.07G008300 Theobroma cacao HOM05D003885 ORTHO05D004623 4.8e-78 295.0 233 77.7
EL10Ac4g07536 Beta vulgaris HOM05D003885 ORTHO05D004623 6.2e-78 294.7 245 74.3
QL08p003216 Quercus lobata HOM05D003885 ORTHO05D004623 6.2e-78 294.7 233 73.8
FAN05G2176 Fragaria x ananassa HOM05D003885 ORTHO05D004623 8.1e-78 294.3 236 76.3
FvH4_6g22570 Fragaria vesca HOM05D003885 ORTHO05D004623 1.4e-77 293.5 235 76.2
Zm00001eb119790 Zea mays HOM05D003885 ORTHO05D004623 1.4e-77 293.5 235 72.3
FAN09G2902 Fragaria x ananassa HOM05D003885 ORTHO05D004623 2.4e-77 292.7 236 76.3
Ca_21964_v3 Cicer arietinum L. HOM05D003885 ORTHO05D004623 3.1e-77 292.4 233 75.5
Glyma.05G059200 Glycine max HOM05D003885 ORTHO05D004623 3.1e-77 292.4 233 75.5
Sed0017804 Sechium edule HOM05D003885 ORTHO05D004623 3.1e-77 292.4 233 73.8
Psat0s1834g0040 Pisum sativum HOM05D003885 ORTHO05D004623 4.0e-77 292.0 233 72.5
PGR083G1050 Punica granatum HOM05D003885 ORTHO05D004623 6.9e-77 291.2 233 77.7
MD03G1032500 Malus domestica HOM05D003885 ORTHO05D004623 9.0e-77 290.8 234 73.1
MD11G1036400 Malus domestica HOM05D003885 ORTHO05D004623 9.0e-77 290.8 234 73.1
arahy.Tifrunner.gnm1.ann1.JC0UDE Arachis hypogaea HOM05D003885 ORTHO05D004623 1.2e-76 290.4 232 75.0
RcHm_v2.0_Chr3g0480061 Rosa chinensis HOM05D003885 ORTHO05D004623 1.5e-76 290.0 236 74.2
Zm00001eb338740 Zea mays HOM05D003885 ORTHO05D004623 2.6e-76 289.3 234 72.6
Lalb_Chr16g0386671 Lupinus albus HOM05D003885 ORTHO05D004623 4.5e-76 288.5 233 73.8
VMungo0251G1810 Vigna mungo HOM05D003885 ORTHO05D004623 4.5e-76 288.5 233 74.7
CsaV3_3G004310 Cucumis sativus L. HOM05D003885 ORTHO05D004623 5.8e-76 288.1 233 73.0
DCAR_019010 Daucus carota HOM05D003885 ORTHO05D004623 5.8e-76 288.1 232 72.4
Lj1C893G21 Lonicera japonica HOM05D003885 ORTHO05D004623 1.0e-75 287.3 233 70.0
Aqoxy3G02916 Aquilegia oxysepala HOM05D003885 ORTHO05D004623 1.3e-75 287.0 236 72.9
Glyma.17G141500 Glycine max HOM05D003885 ORTHO05D004623 2.9e-75 285.8 233 73.0
HPP92_015188 Vanilla planifolia HOM05D003885 ORTHO05D004623 2.9e-75 285.8 237 70.5
MELO3C014122.2 Cucumis melo HOM05D003885 ORTHO05D004623 3.8e-75 285.4 233 73.0
TWI38G2335 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 4.9e-75 285.0 232 72.8
Eucgr.F02030 Eucalyptus grandis HOM05D003885 ORTHO05D004623 8.4e-75 284.3 233 76.0
DCAR_003369 Daucus carota HOM05D003885 ORTHO05D004623 1.9e-74 283.1 232 72.8
Medtr4g100970 Medicago truncatula HOM05D003885 ORTHO05D004623 1.9e-74 283.1 233 71.2
PSO210G1946 Papaver somniferum HOM05D003885 ORTHO05D004623 3.2e-74 282.3 232 75.0
PSO210G5551 Papaver somniferum HOM05D003885 ORTHO05D004623 5.5e-74 281.6 232 75.0
Phvul.003G220300 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 1.6e-73 280.0 233 73.0
ATR1153G045 Amborella trichopoda HOM05D003885 ORTHO05D004623 2.1e-73 279.6 234 73.5
Sabra16G0243800 Salix brachista HOM05D003885 ORTHO05D004623 2.1e-73 279.6 251 64.5
AUR62017134 Chenopodium quinoa HOM05D003885 ORTHO05D004623 2.3e-72 276.2 239 65.3
Lsat_1_v5_gn_5_188801 Lactuca sativa HOM05D003885 ORTHO05D004623 2.3e-72 276.2 235 71.5
vmacro11612 Vaccinium macrocarpon HOM05D003885 ORTHO05D004623 3.0e-72 275.8 233 66.5
ECA246G5298 Erigeron canadensis HOM05D003885 ORTHO05D004623 5.1e-72 275.0 233 72.1
CAN.G492.53 Capsicum annuum HOM05D003885 ORTHO05D004623 8.7e-72 274.2 233 70.8
Sopen07g033990 Solanum pennellii HOM05D003885 ORTHO05D004623 1.1e-71 273.9 233 73.8
CiPaw.12G140300 Carya illinoinensis HOM05D003885 ORTHO05D004623 1.5e-71 273.5 233 71.2
Solyc10g005800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 9.6e-71 270.8 234 71.4
Sopen10g001770 Solanum pennellii HOM05D003885 ORTHO05D004623 9.6e-71 270.8 234 71.4
Dinv40883 Davidia involucrata HOM05D003885 ORTHO05D004623 1.3e-70 270.4 233 63.9
Nitab4.5_0010643g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 2.8e-70 269.2 233 71.2
Nitab4.5_0005478g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 4.8e-70 268.5 237 65.8
PGSC0003DMG400008684 Solanum tuberosum HOM05D003885 ORTHO05D004623 6.2e-70 268.1 234 70.9
GSVIVG01014735001 Vitis vinifera HOM05D003885 ORTHO05D004623 5.3e-69 265.0 233 71.7
Hma1.2p1_0193F.1_g083890 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 6.9e-69 264.6 286 55.6
PGSC0003DMG400022160 Solanum tuberosum HOM05D003885 ORTHO05D004623 6.9e-69 264.6 240 71.2
Phvul.008G217400 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 1.5e-68 263.5 233 65.2
MBI11_g04749_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 2.0e-68 263.1 238 70.6
AUR62035674 Chenopodium quinoa HOM05D003885 ORTHO05D004623 7.6e-68 261.2 235 63.8
MSTRG.14500 Avicennia marina HOM05D003885 ORTHO05D004623 2.9e-67 259.2 233 69.5
Sc03g0011570 Simmondsia chinensis HOM05D003885 ORTHO05D004623 2.9e-67 259.2 234 70.1
Peaxi162Scf00139g01026 Petunia axillaris HOM05D003885 ORTHO05D004623 5.0e-67 258.5 232 62.9
Lalb_Chr05g0221281 Lupinus albus HOM05D003885 ORTHO05D004623 9.3e-66 254.2 233 67.8
Pp3c5_15120 Physcomitrium patens HOM05D003885 ORTHO05D004623 9.3e-66 254.2 236 64.8
SalBow2G3065 Salvia bowleyana HOM05D003885 ORTHO05D004623 9.3e-66 254.2 233 63.5
Mapoly0072s0064 Marchantia polymorpha HOM05D003885 ORTHO05D004623 2.7e-65 252.7 236 68.2
FAN02G3468 Fragaria x ananassa HOM05D003885 ORTHO05D004623 3.5e-65 252.3 220 73.6
Duzib170G0277 Durio zibethinus HOM05D003885 ORTHO05D004623 1.3e-64 250.4 233 65.2
Oeu039420.1 Olea europaea HOM05D003885 ORTHO05D004623 1.3e-64 250.4 228 68.4
unitig_61.g26133 Utricularia gibba HOM05D003885 ORTHO05D004623 8.7e-64 247.7 234 66.7
MSTRG.13030 Avicennia marina HOM05D003885 ORTHO05D004623 7.4e-63 244.6 233 67.8
SalBow2G0786 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.6e-62 243.4 233 68.2
AagrBONN_evm.TU.Sc2ySwM_228.690 Anthoceros agrestis HOM05D003885 ORTHO05D004623 1.1e-61 240.7 231 63.2
SalBow2G1425 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.1e-61 240.7 233 67.8
unitig_0.g990 Utricularia gibba HOM05D003885 ORTHO05D004623 4.1e-61 238.8 234 67.1
SalBow8G3434 Salvia bowleyana HOM05D003885 ORTHO05D004623 5.3e-61 238.4 233 67.4
SalBow2G3218 Salvia bowleyana HOM05D003885 ORTHO05D004623 9.0e-61 237.7 233 67.0
Migut.M01631 Erythranthe guttata HOM05D003885 ORTHO05D004623 1.5e-60 236.9 233 67.8
Lsat_1_v5_gn_5_2000 Lactuca sativa HOM05D003885 ORTHO05D004623 2.2e-59 233.0 272 55.9
Nitab4.5_0003328g0110 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.2e-57 227.3 235 64.3
SHI27704 Sapria himalayana HOM05D003885 ORTHO05D004623 2.7e-57 226.1 184 77.2
HanXRQChr05g0160321 Helianthus annuus HOM05D003885 ORTHO05D004623 1.8e-56 223.4 232 63.8
HanXRQChr08g0233271 Helianthus annuus HOM05D003885 ORTHO05D004623 5.1e-56 221.9 232 62.9
CBR_g58788 Chara braunii HOM05D003885 ORTHO05D004623 5.7e-55 218.4 233 61.4
Actinidia10568 Actinidia chinensis HOM05D003885 ORTHO05D004623 1.1e-53 214.2 189 70.4
Nn1g07559 Nelumbo nucifera HOM05D003885 ORTHO05D004623 2.9e-51 206.1 162 75.3
SMO356G0623 Selaginella moellendorffii HOM05D003885 ORTHO05D004623 1.0e-48 197.6 238 58.0
CSS0032461 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 3.9e-48 195.7 183 69.4
Hma1.2p1_0133F.1_g061250 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 2.8e-46 189.5 120 80.0
CSS0035354 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 3.1e-45 186.0 233 57.1
SGA_v2.0_scaffold8G04417 Striga asiatica HOM05D003885 ORTHO05D004623 2.0e-44 183.3 157 72.0
CSS0021051 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 5.9e-44 181.8 119 76.5
TPR.G37597 Trifolium pratense HOM05D003885 ORTHO05D004623 7.7e-44 181.4 120 76.7
Nitab4.5_0000152g0340 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.0e-43 181.0 255 48.6
MCO14G028 Micromonas commoda HOM05D003885 ORTHO05D004623 2.5e-42 176.4 239 54.0
BcaC01g04006 Brassica carinata HOM05D003885 ORTHO05D004623 1.4e-40 170.6 98 92.9
SalBow2G2880 Salvia bowleyana HOM05D003885 ORTHO05D004623 4.0e-40 169.1 113 77.9
SalBow2G0143 Salvia bowleyana HOM05D003885 ORTHO05D004623 5.2e-40 168.7 113 77.0
Cre24.g755447 Chlamydomonas reinhardtii HOM05D003885 ORTHO05D004623 2.0e-39 166.8 244 50.8
SalBow2G2704 Salvia bowleyana HOM05D003885 ORTHO05D004623 5.7e-39 165.2 113 76.1
C05p54720 Brassica napus HOM05D003885 ORTHO05D004623 3.5e-36 156.0 92 90.2
RcHm_v2.0_Chr1g0318721 Rosa chinensis HOM05D003885 ORTHO05D004623 4.5e-36 155.6 121 70.2
Solyc07g065800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 1.5e-34 150.6 158 68.4
CAN.G1427.13 Capsicum annuum HOM05D000822 ORTHO05D004949 8.0e-33 144.8 140 66.4
BcaB04g21002 Brassica carinata HOM05D003885 ORTHO05D004623 5.2e-32 142.1 90 85.6
arahy.Tifrunner.gnm1.ann1.BGFV7A Arachis hypogaea HOM05D003885 ORTHO05D004623 1.2e-28 131.0 94 76.6
Hma1.2p1_0133F.1_g061260 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 1.2e-28 131.0 97 71.1
MCO14G027 Micromonas commoda HOM05D003885 ORTHO05D004623 4.9e-22 109.0 184 49.5
TPR.G37600 Trifolium pratense HOM05D003885 ORTHO05D004623 1.8e-21 107.1 77 72.7
MBI19_g41323_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 3.1e-21 106.3 83 68.7
PRCOL_00003569 Prasinoderma coloniale HOM05D003885 ORTHO05D004623 5.4e-21 105.5 232 38.8
COL.COLO4_09698 Corchorus olitorius HOM05D003885 ORTHO05D004623 8.6e-19 98.2 97 58.8
ATR0733G199 Amborella trichopoda HOM05D003885 ORTHO05D004623 9.5e-18 94.7 73 72.6
RcHm_v2.0_Chr3g0468911 Rosa chinensis HOM05D003885 ORTHO05D004623 6.1e-17 92.0 224 33.5
SalBow8G5188 Salvia bowleyana HOM05D003885 ORTHO05D004623 8.0e-17 91.7 184 41.3
Zm00001eb157240 Zea mays HOM05D003885 ORTHO05D004623 1.0e-16 91.3 78 61.5
ATR0733G138 Amborella trichopoda HOM05D003885 ORTHO05D004623 8.3e-14 81.6 44 86.4
Lsat_1_v5_gn_8_106160 Lactuca sativa HOM05D003885 ORTHO05D004623 4.6e-12 75.9 56 66.1
PSO384G2596 Papaver somniferum HOM05D003885 ORTHO05D004623 1.0e-08 64.7 71 53.5
CSS0001317 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.4e-08 64.3 92 45.7
CSS0038981 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 8.9e-08 61.6 90 47.8
Haze_27574 Corylus avellana HOM05D003885 ORTHO05D164292 7.5e-07 58.5 110 34.5
Zm00001eb225910 Zea mays HOM05D003885 ORTHO05D444501 3.7e-06 56.2 59 57.6


User provided reference genes

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