Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g28900 Brassica carinata HOM05D003995 ORTHO05D004800 0.0e+00 1338.9 696 100.0
BolC5t33775H Brassica oleracea HOM05D003995 ORTHO05D004800 0.0e+00 1338.9 696 100.0
BraA05t22150Z Brassica rapa HOM05D003995 ORTHO05D004800 0.0e+00 1307.7 696 97.6
C05p50240 Brassica napus HOM05D003995 ORTHO05D004800 0.0e+00 1299.3 696 97.7
A05p33250 Brassica napus HOM05D003995 ORTHO05D004800 0.0e+00 1290.0 697 96.7
BcaB06g25717 Brassica carinata HOM05D003995 ORTHO05D004800 0.0e+00 1268.4 697 95.1
Sp3g14640 Schrenkiella parvula HOM05D003995 ORTHO05D004800 0.0e+00 1238.4 696 92.2
CARHR091480 Cardamine hirsuta HOM05D003995 ORTHO05D004800 0.0e+00 1186.4 697 88.2
AT3G16270 Arabidopsis thaliana HOM05D003995 ORTHO05D004800 0.0e+00 1179.1 696 88.1
AL3G29010 Arabidopsis lyrata HOM05D003995 ORTHO05D004800 0.0e+00 1177.5 696 87.8
Thhalv10020187m.g Eutrema salsugineum HOM05D003995 ORTHO05D004800 0.0e+00 1169.5 696 87.9
Carub.0003s1602 Capsella rubella HOM05D003995 ORTHO05D004800 0.0e+00 1166.8 696 87.2
Aa31LG8G3420 Aethionema arabicum HOM05D003995 ORTHO05D004800 0.0e+00 1082.8 703 80.9
THA.LOC104817968 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 1.1e-279 966.5 703 73.0
THA.LOC104810534 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 1.1e-263 913.3 705 69.5
Thecc.06G096000 Theobroma cacao HOM05D003995 ORTHO05D004800 2.2e-222 776.2 714 61.6
COL.COLO4_30474 Corchorus olitorius HOM05D003995 ORTHO05D004800 4.5e-220 768.5 707 60.8
Potri.001G187000 Populus trichocarpa HOM05D003995 ORTHO05D004800 2.9e-219 765.8 714 60.4
FvH4_6g32000 Fragaria vesca HOM05D003995 ORTHO05D004800 1.2e-217 760.4 711 59.9
QL05p021104 Quercus lobata HOM05D003995 ORTHO05D004800 8.8e-216 754.2 713 61.0
FAN05G2434 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.3e-214 750.4 733 58.9
Manes.04G131700 Manihot esculenta HOM05D003995 ORTHO05D004800 2.2e-214 749.6 718 58.9
Cpa.g.sc109.33 Carica papaya HOM05D003995 ORTHO05D004800 1.1e-213 747.3 702 61.3
Gohir.A02G119100 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.6e-212 743.4 707 60.5
TPR.G14825 Trifolium pratense HOM05D003995 ORTHO05D004800 8.5e-211 737.6 723 60.0
Cfa002115 Carpinus fangiana HOM05D003995 ORTHO05D004800 4.2e-210 735.3 710 59.4
Gohir.A05G128000 Gossypium hirsutum HOM05D003995 ORTHO05D004800 5.5e-210 734.9 708 59.0
Gorai.009G136200 Gossypium raimondii HOM05D003995 ORTHO05D004800 9.4e-210 734.2 708 59.5
Manes.11G036200 Manihot esculenta HOM05D003995 ORTHO05D004800 1.6e-209 733.4 732 57.7
Lj3g0012728 Lotus japonicus HOM05D003995 ORTHO05D004800 2.7e-209 732.6 715 58.6
Haze_16334 Corylus avellana HOM05D003995 ORTHO05D004800 4.7e-209 731.9 727 58.6
Prupe.3G063200 Prunus persica HOM05D003995 ORTHO05D004800 6.1e-209 731.5 712 58.4
Gohir.D03G059900 Gossypium hirsutum HOM05D003995 ORTHO05D004800 5.2e-208 728.4 707 59.5
Psat4g198440 Pisum sativum HOM05D003995 ORTHO05D004800 1.5e-207 726.9 721 58.1
Gohir.D05G132500 Gossypium hirsutum HOM05D003995 ORTHO05D004800 2.6e-207 726.1 708 59.2
VMungo0331G0049 Vigna mungo HOM05D003995 ORTHO05D004800 5.7e-207 724.9 713 59.2
CiPaw.02G147500 Carya illinoinensis HOM05D003995 ORTHO05D004800 9.8e-207 724.2 712 58.1
FAN14G0476 Fragaria x ananassa HOM05D003995 ORTHO05D004800 2.8e-206 722.6 711 58.1
MD09G1207100 Malus domestica HOM05D003995 ORTHO05D004800 2.8e-206 722.6 713 57.4
CiPaw.01G233700 Carya illinoinensis HOM05D003995 ORTHO05D004800 1.1e-205 720.7 709 57.4
Glyma.07G017700 Glycine max HOM05D003995 ORTHO05D004800 1.1e-205 720.7 714 59.0
GSVIVG01017039001 Vitis vinifera HOM05D003995 ORTHO05D004800 1.1e-205 720.7 716 57.8
Gorai.003G063800 Gossypium raimondii HOM05D003995 ORTHO05D004800 1.8e-205 719.9 702 59.7
Atru.chr1.3467 Acer truncatum HOM05D003995 ORTHO05D004800 7.0e-205 718.0 698 58.0
CANSAT56G4226 Cannabis sativa HOM05D003995 ORTHO05D004800 7.0e-205 718.0 713 58.5
Duzib235G0154 Durio zibethinus HOM05D003995 ORTHO05D004800 1.6e-204 716.8 695 58.8
arahy.Tifrunner.gnm1.ann1.8U94IH Arachis hypogaea HOM05D003995 ORTHO05D004800 2.0e-204 716.5 711 57.7
Actinidia21699 Actinidia chinensis HOM05D003995 ORTHO05D004800 4.5e-204 715.3 715 58.6
Eucgr.F03056 Eucalyptus grandis HOM05D003995 ORTHO05D004800 6.6e-203 711.4 708 57.5
TAR624G1104 Trochodendron aralioides HOM05D003995 ORTHO05D004800 6.6e-203 711.4 720 58.1
Ca_11524_v3 Cicer arietinum L. HOM05D003995 ORTHO05D004800 4.2e-202 708.8 717 58.6
Medtr8g013720 Medicago truncatula HOM05D003995 ORTHO05D004800 4.2e-202 708.8 727 58.0
MD17G1187800 Malus domestica HOM05D003995 ORTHO05D004800 2.8e-201 706.1 719 56.5
Hma1.2p1_0659F.1_g197350 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 4.0e-200 702.2 711 58.4
FAN02G0974 Fragaria x ananassa HOM05D003995 ORTHO05D004800 5.2e-200 701.8 713 57.4
Ciclev10027380m.g Citrus clementina HOM05D003995 ORTHO05D004800 1.2e-199 700.7 742 55.5
TWI75G1811 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 2.0e-199 699.9 706 57.2
Gorai.010G229800 Gossypium raimondii HOM05D003995 ORTHO05D004800 2.6e-199 699.5 707 57.9
Hma1.2p1_1689F.1_g297670 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 7.5e-199 698.0 713 57.8
Phvul.010G147000 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 1.1e-197 694.1 712 57.2
FAN09G2208 Fragaria x ananassa HOM05D003995 ORTHO05D004800 2.4e-197 693.0 713 57.4
Lalb_Chr01g0013091 Lupinus albus HOM05D003995 ORTHO05D004800 7.0e-197 691.4 705 57.2
Sc12g0009570 Simmondsia chinensis HOM05D003995 ORTHO05D004800 9.2e-197 691.0 710 55.4
TWI18G0079 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 1.6e-196 690.3 711 55.4
Gohir.D06G197450 Gossypium hirsutum HOM05D003995 ORTHO05D004800 2.0e-196 689.9 707 57.4
Peaxi162Scf00090g00073 Petunia axillaris HOM05D003995 ORTHO05D004800 2.7e-196 689.5 707 55.7
Lalb_Chr25g0280081 Lupinus albus HOM05D003995 ORTHO05D004800 4.5e-196 688.7 709 57.1
TWI12G0239 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 4.5e-196 688.7 711 56.1
CSS0042187 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 1.7e-195 686.8 712 56.6
CsaV3_3G023750 Cucumis sativus L. HOM05D003995 ORTHO05D004800 5.0e-195 685.3 710 56.5
CSS0043166 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 1.5e-194 683.7 715 56.9
PSO210G6397 Papaver somniferum HOM05D003995 ORTHO05D004800 7.3e-194 681.4 724 56.6
Nitab4.5_0002549g0020 Nicotiana tabacum HOM05D003995 ORTHO05D004800 2.3e-192 676.4 706 55.5
PSO210G6330 Papaver somniferum HOM05D003995 ORTHO05D004800 4.0e-192 675.6 726 56.5
TAR102G0002 Trochodendron aralioides HOM05D003995 ORTHO05D004800 9.8e-191 671.0 721 55.2
Sed0011470 Sechium edule HOM05D003995 ORTHO05D004800 1.7e-190 670.2 720 55.4
DCAR_019957 Daucus carota HOM05D003995 ORTHO05D004800 2.2e-190 669.8 707 55.2
Cc00_g10390 Coffea canephora HOM05D003995 ORTHO05D004800 4.9e-190 668.7 712 54.2
Sed0003559 Sechium edule HOM05D003995 ORTHO05D004800 1.9e-189 666.8 714 55.9
Hund06648 Selenicereus undatus HOM05D003995 ORTHO05D004800 2.4e-189 666.4 723 54.6
PGR102G1287 Punica granatum HOM05D003995 ORTHO05D004800 9.2e-189 664.5 714 54.8
AUR62031875 Chenopodium quinoa HOM05D003995 ORTHO05D004800 3.5e-188 662.5 711 54.1
Migut.H00960 Erythranthe guttata HOM05D003995 ORTHO05D004800 3.5e-188 662.5 712 53.9
Glyma.08G202900 Glycine max HOM05D003995 ORTHO05D004800 3.5e-188 662.5 713 55.8
Eucgr.J02949 Eucalyptus grandis HOM05D003995 ORTHO05D004800 5.0e-187 658.7 716 53.5
CAN.G60.5 Capsicum annuum HOM05D003995 ORTHO05D004800 1.5e-186 657.1 705 54.2
PGR102G1422 Punica granatum HOM05D003995 ORTHO05D004800 1.9e-186 656.8 710 54.4
MSTRG.23509 Avicennia marina HOM05D003995 ORTHO05D004800 7.3e-186 654.8 713 54.1
Aqoxy7G01498 Aquilegia oxysepala HOM05D003995 ORTHO05D004800 1.2e-185 654.1 720 54.3
PGSC0003DMG400008535 Solanum tuberosum HOM05D003995 ORTHO05D004800 2.8e-185 652.9 708 53.8
Dinv30461 Davidia involucrata HOM05D003995 ORTHO05D004800 1.1e-184 651.0 711 54.4
Glyma.13G355800 Glycine max HOM05D003995 ORTHO05D004800 3.1e-184 649.4 715 54.1
EL10Ac9g22110 Beta vulgaris HOM05D003995 ORTHO05D004800 8.9e-184 647.9 705 52.5
Dinv38000 Davidia involucrata HOM05D003995 ORTHO05D004800 9.8e-183 644.4 698 55.3
Oeu017626.1 Olea europaea HOM05D003995 ORTHO05D004800 1.3e-182 644.0 718 54.2
AUR62022169 Chenopodium quinoa HOM05D003995 ORTHO05D004800 3.7e-182 642.5 711 53.4
Sopen04g017970 Solanum pennellii HOM05D003995 ORTHO05D004800 6.4e-182 641.7 705 53.3
Solyc04g047770.3 Solanum lycopersicum HOM05D003995 ORTHO05D004800 7.8e-180 634.8 705 53.0
Lsat_1_v5_gn_2_39201 Lactuca sativa HOM05D003995 ORTHO05D004800 5.1e-179 632.1 725 53.9
Oeu050081.1 Olea europaea HOM05D003995 ORTHO05D004800 1.5e-178 630.6 711 53.6
SGA_v2.0_scaffold44G16540 Striga asiatica HOM05D003995 ORTHO05D004800 4.0e-176 622.5 715 53.0
Nitab4.5_0004354g0010 Nicotiana tabacum HOM05D003995 ORTHO05D004800 1.3e-174 617.5 865 45.8
Ah.01g005620 Amaranthus hybridus HOM05D003995 ORTHO05D004800 4.9e-174 615.5 712 51.1
ECA248G2833 Erigeron canadensis HOM05D003995 ORTHO05D004800 3.2e-173 612.8 685 54.6
CSS0032416 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 6.0e-172 608.6 708 52.7
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 1.3e-171 607.4 699 51.6
Rhsim08G0225700 Rhododendron simsii HOM05D003995 ORTHO05D004800 1.1e-170 604.4 711 51.8
HanXRQChr01g0017801 Helianthus annuus HOM05D003995 ORTHO05D004800 3.3e-170 602.8 710 53.0
HanXRQChr14g0434431 Helianthus annuus HOM05D003995 ORTHO05D004800 3.3e-170 602.8 711 53.3
MBI04_g27074_MAGBIO Magnolia biondii HOM05D003266 ORTHO05D003718 5.6e-170 602.1 730 52.2
Zm00001eb339300 Zea mays HOM05D003995 ORTHO05D004800 6.8e-168 595.1 709 50.6
Os01g0232400 Oryza sativa ssp. japonica HOM05D003995 ORTHO05D004800 2.0e-167 593.6 713 50.4
ATR0705G117 Amborella trichopoda HOM05D003995 ORTHO05D004800 5.8e-167 592.0 728 51.9
VMungo1080G0563 Vigna mungo HOM05D003995 ORTHO05D004800 1.3e-166 590.9 703 50.8
Phvul.005G170500 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 1.6e-164 583.9 712 50.0
SalBow1G2060 Salvia bowleyana HOM05D003995 ORTHO05D004800 6.0e-164 582.0 739 49.0
Zm00001eb119170 Zea mays HOM05D003995 ORTHO05D004800 1.5e-162 577.4 706 49.6
CDE08G1118 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 2.8e-161 573.2 714 48.3
MELO3C012986.2 Cucumis melo HOM05D003995 ORTHO05D004800 6.2e-161 572.0 643 53.8
CDE02G3541 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 1.8e-160 570.5 712 48.6
SHI11063 Sapria himalayana HOM05D003995 ORTHO05D004800 3.8e-150 536.2 690 49.4
Nn2g11632 Nelumbo nucifera HOM05D003995 ORTHO05D004800 5.1e-147 525.8 719 47.7
HPP92_008092 Vanilla planifolia HOM05D003995 ORTHO05D004800 6.7e-139 498.8 731 46.4
Gohir.A06G188875 Gossypium hirsutum HOM05D003995 ORTHO05D004800 5.7e-130 469.2 373 68.1
SalBow1G1048 Salvia bowleyana HOM05D003995 ORTHO05D004800 1.0e-126 458.4 375 63.2
SalBow1G5856 Salvia bowleyana HOM05D003995 ORTHO05D004800 1.0e-126 458.4 375 63.2
MBI01_g24453_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 8.5e-126 455.3 683 46.4
SEGI_23305 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 1.4e-125 454.5 744 41.4
Nn3g18163 Nelumbo nucifera HOM05D003995 ORTHO05D004800 2.5e-125 453.8 382 63.9
QL04p048641 Quercus lobata HOM05D003995 ORTHO05D004800 1.6e-116 424.5 606 45.2
RcHm_v2.0_Chr2g0139591 Rosa chinensis HOM05D003995 ORTHO05D004800 1.3e-113 414.8 323 70.0
Lj4A820G41 Lonicera japonica HOM05D003995 ORTHO05D004800 4.7e-108 396.4 549 49.2
vmacro18871 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 1.5e-106 391.3 323 65.3
Mapoly0022s0096 Marchantia polymorpha HOM05D003995 ORTHO05D004800 1.2e-98 365.2 748 39.0
SMO340G0180 Selaginella moellendorffii HOM05D003995 ORTHO05D004800 3.8e-94 350.1 717 37.9
Pp3c2_17390 Physcomitrium patens HOM05D003995 ORTHO05D004800 4.2e-93 346.7 737 37.9
AagrBONN_evm.TU.Sc2ySwM_362.567 Anthoceros agrestis HOM05D003995 ORTHO05D004800 5.7e-90 336.3 770 36.0
RcHm_v2.0_Chr2g0139601 Rosa chinensis HOM05D003995 ORTHO05D004800 2.0e-87 327.8 389 49.9
Hund00665 Selenicereus undatus HOM05D003995 ORTHO05D004800 8.6e-86 322.4 484 42.8
Sabra01G0153300 Salix brachista HOM05D003995 ORTHO05D004800 2.8e-84 317.4 394 50.0
arahy.Tifrunner.gnm1.ann1.QE1TJP Arachis hypogaea HOM05D003995 ORTHO05D004800 2.4e-80 304.3 389 48.1
MBI01_g39826_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 3.7e-73 280.4 625 35.5
CBR_g36315 Chara braunii HOM05D003995 ORTHO05D004800 1.7e-62 245.0 475 37.7
Actinidia39150 Actinidia chinensis HOM05D003995 ORTHO05D004800 7.1e-56 223.0 406 40.6
CBR_g31940 Chara braunii HOM05D003995 ORTHO05D004800 2.3e-54 218.0 441 34.5
Actinidia32710 Actinidia chinensis HOM05D003995 ORTHO05D004800 4.0e-51 207.2 152 72.4
ClCG07G013220 Citrullus lanatus HOM05D003995 ORTHO05D004800 5.2e-51 206.8 342 43.6
vmacro18870 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 7.3e-45 186.4 346 40.5
CDE02G4060 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 6.0e-39 166.8 221 43.9
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 1.0e-38 166.0 268 38.8
Actinidia32709 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.1e-37 162.5 344 36.9
Glyma.15G018300 Glycine max HOM05D003995 ORTHO05D004800 7.3e-37 159.8 255 41.2
Cre12.g545300 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 5.4e-32 143.7 398 30.7
Actinidia09000 Actinidia chinensis HOM05D003995 ORTHO05D004800 3.0e-30 137.9 162 52.5
Cre12.g545150 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 4.3e-29 134.0 375 31.2
FAN18G0014 Fragaria x ananassa HOM05D003995 ORTHO05D004800 5.8e-26 123.6 69 87.0
Lj4C820T9 Lonicera japonica HOM05D003995 ORTHO05D004800 2.2e-25 121.7 69 87.0
HanXRQChr10g0310971 Helianthus annuus HOM05D003995 ORTHO05D004800 6.5e-25 120.2 164 47.6
PRCOL_00002233 Prasinoderma coloniale HOM05D003995 ORTHO05D004800 1.9e-24 118.6 391 26.9
MBI07_g11499_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 2.1e-20 105.1 62 83.9
Actinidia08998 Actinidia chinensis HOM05D003995 ORTHO05D004800 2.0e-18 98.6 57 84.2
FvH4_5g23151 Fragaria vesca HOM05D003995 ORTHO05D004800 3.8e-17 94.4 50 90.0
SEGI_12342 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 3.8e-17 94.4 82 52.4
FvH4_7g32131 Fragaria vesca HOM05D003995 ORTHO05D004800 4.2e-16 90.9 50 86.0
Lsat_1_v5_gn_7_27180 Lactuca sativa HOM05D003995 ORTHO05D004605 7.4e-13 80.1 60 65.0
Actinidia39149 Actinidia chinensis HOM05D003995 ORTHO05D004800 9.7e-13 79.7 157 37.6
Gohir.D03G024850 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.2e-10 72.8 88 47.7
Gorai.003G083400 Gossypium raimondii HOM05D003995 ORTHO05D004800 1.3e-09 69.3 89 48.3
MCO13G545 Micromonas commoda HOM05D003995 ORTHO05D004800 1.3e-09 69.3 107 36.4
Pp3c1_18430 Physcomitrium patens HOM05D003995 ORTHO05D004800 1.7e-09 68.9 427 26.5
Zm00001eb248030 Zea mays HOM05D002169 ORTHO05D004800 2.9e-09 68.2 87 46.0
MBI03_g21265_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 3.8e-09 67.8 46 69.6


User provided reference genes

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