Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g28175 Brassica carinata HOM05D005962 ORTHO05D007325 7.6e-141 503.8 256 100.0
C05p42110 Brassica napus HOM05D005962 ORTHO05D007325 9.3e-139 496.9 256 98.8
A05p27250 Brassica napus HOM05D005962 ORTHO05D007325 1.5e-136 489.6 256 97.3
BraA05t21615Z Brassica rapa HOM05D005962 ORTHO05D007325 6.3e-135 484.2 266 94.0
BcaB06g26231 Brassica carinata HOM05D005962 ORTHO05D007325 3.4e-133 478.4 259 94.2
BolC5t32941H Brassica oleracea HOM05D005962 ORTHO05D007325 3.4e-133 478.4 293 86.3
Sp3g19410 Schrenkiella parvula HOM05D005962 ORTHO05D007325 4.8e-127 458.0 259 88.8
Aa31LG8G8050 Aethionema arabicum HOM05D005962 ORTHO05D007325 1.7e-119 433.0 259 83.4
Thhalv10021373m.g Eutrema salsugineum HOM05D005962 ORTHO05D007325 1.7e-119 433.0 259 84.9
CARHR097270 Cardamine hirsuta HOM05D005962 ORTHO05D007325 3.7e-119 431.8 260 84.6
AL3G35400 Arabidopsis lyrata HOM05D005962 ORTHO05D007325 1.1e-118 430.3 259 83.4
AT3G21350 Arabidopsis thaliana HOM05D005962 ORTHO05D007325 3.4e-117 425.2 259 83.4
Carub.0003s2138 Capsella rubella HOM05D005962 ORTHO05D007325 1.2e-114 416.8 259 81.1
THA.LOC104805924 Tarenaya hassleriana HOM05D005962 ORTHO05D007325 9.7e-104 380.6 250 76.4
CsaV3_3G023410 Cucumis sativus L. HOM05D005962 ORTHO05D007325 2.8e-90 335.9 246 72.4
Thecc.06G103400 Theobroma cacao HOM05D005962 ORTHO05D007325 4.0e-89 332.0 245 68.6
Prupe.3G054900 Prunus persica HOM05D005962 ORTHO05D007325 5.2e-89 331.6 242 69.8
Rhsim08G0229500 Rhododendron simsii HOM05D005962 ORTHO05D007325 1.5e-88 330.1 243 66.7
Sabra17G0126400 Salix brachista HOM05D005962 ORTHO05D007325 2.0e-88 329.7 236 68.6
ClCG07G013490 Citrullus lanatus HOM05D005962 ORTHO05D007325 3.4e-88 328.9 233 73.8
Sed0025844 Sechium edule HOM05D005962 ORTHO05D007325 3.4e-88 328.9 242 71.5
vmacro18833 Vaccinium macrocarpon HOM05D005962 ORTHO05D007325 3.4e-88 328.9 244 67.2
COL.COLO4_30547 Corchorus olitorius HOM05D005962 ORTHO05D007325 5.7e-88 328.2 245 69.4
TAR623G1297 Trochodendron aralioides HOM05D005962 ORTHO05D007325 7.5e-88 327.8 257 65.4
Manes.04G136400 Manihot esculenta HOM05D005962 ORTHO05D007325 4.9e-87 325.1 246 68.3
Haze_15888 Corylus avellana HOM05D005962 ORTHO05D007325 6.3e-87 324.7 237 67.9
Gohir.D10G065400 Gossypium hirsutum HOM05D005962 ORTHO05D007325 1.1e-86 323.9 244 68.4
CiPaw.02G144100 Carya illinoinensis HOM05D005962 ORTHO05D007325 1.4e-86 323.6 245 67.8
Gohir.A10G063800 Gossypium hirsutum HOM05D005962 ORTHO05D007325 1.8e-86 323.2 244 67.2
Gohir.D01G215700 Gossypium hirsutum HOM05D005962 ORTHO05D007325 5.4e-86 321.6 244 65.2
Lj3g0005277 Lotus japonicus HOM05D005962 ORTHO05D007325 5.4e-86 321.6 244 69.7
DCAR_007600 Daucus carota HOM05D005962 ORTHO05D007325 7.0e-86 321.2 246 65.0
Gorai.011G069400 Gossypium raimondii HOM05D005962 ORTHO05D007325 7.0e-86 321.2 234 70.1
Duzib192G0276 Durio zibethinus HOM05D005962 ORTHO05D007325 1.2e-85 320.5 244 66.0
Oeu024256.1 Olea europaea HOM05D005962 ORTHO05D007325 1.2e-85 320.5 253 64.0
MSTRG.11013 Avicennia marina HOM05D005962 ORTHO05D007325 1.6e-85 320.1 238 69.3
CANSAT21G1984 Cannabis sativa HOM05D005962 ORTHO05D007325 2.0e-85 319.7 245 66.5
MELO3C013015.2 Cucumis melo HOM05D005962 ORTHO05D007325 3.5e-85 318.9 274 64.6
Manes.11G030300 Manihot esculenta HOM05D005962 ORTHO05D007325 3.5e-85 318.9 248 65.7
Eucgr.J02602 Eucalyptus grandis HOM05D005962 ORTHO05D007325 4.5e-85 318.5 253 65.2
Glyma.08G199200 Glycine max HOM05D005962 ORTHO05D007325 4.5e-85 318.5 234 70.5
Phvul.010G143300 Phaseolus vulgaris HOM05D005962 ORTHO05D007325 1.0e-84 317.4 237 70.0
Psat4g195960 Pisum sativum HOM05D005962 ORTHO05D007325 1.0e-84 317.4 237 68.4
Rhsim08G0229700 Rhododendron simsii HOM05D005962 ORTHO05D007325 1.7e-84 316.6 252 63.5
Lalb_Chr01g0013231 Lupinus albus HOM05D005962 ORTHO05D007325 2.3e-84 316.2 232 68.1
Gorai.002G261900 Gossypium raimondii HOM05D005962 ORTHO05D007325 2.9e-84 315.8 244 64.3
VMungo0331G0822 Vigna mungo HOM05D005962 ORTHO05D007325 5.0e-84 315.1 241 69.3
Ciclev10026335m.g Citrus clementina HOM05D005962 ORTHO05D007325 6.6e-84 314.7 239 68.6
PGSC0003DMG401002516 Solanum tuberosum HOM05D005962 ORTHO05D007325 8.6e-84 314.3 243 65.4
Actinidia32123 Actinidia chinensis HOM05D005962 ORTHO05D007325 1.1e-83 313.9 246 65.0
QL08p056642 Quercus lobata HOM05D005962 ORTHO05D007325 2.5e-83 312.8 230 70.9
TWI12G1051 Tripterygium wilfordii HOM05D005962 ORTHO05D007325 3.3e-83 312.4 246 64.2
Atru.chr12.732 Acer truncatum HOM05D005962 ORTHO05D007325 4.3e-83 312.0 235 67.7
Aqoxy2G04031 Aquilegia oxysepala HOM05D005962 ORTHO05D007325 4.3e-83 312.0 231 67.5
arahy.Tifrunner.gnm1.ann1.FEFU12 Arachis hypogaea HOM05D005962 ORTHO05D007325 7.3e-83 311.2 229 68.6
arahy.Tifrunner.gnm1.ann1.M52QXX Arachis hypogaea HOM05D005962 ORTHO05D007325 7.3e-83 311.2 229 69.0
Cc00_g23930 Coffea canephora HOM05D005962 ORTHO05D007325 7.3e-83 311.2 239 65.7
Hma1.2p1_2308F.1_g319480 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 7.3e-83 311.2 246 67.5
MBI01_g35895_MAGBIO Magnolia biondii HOM05D005962 ORTHO05D007325 7.3e-83 311.2 241 66.0
Hma1.2p1_0764F.1_g214960 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 9.5e-83 310.8 246 67.1
Nn4g25123 Nelumbo nucifera HOM05D005962 ORTHO05D007325 1.6e-82 310.1 247 64.4
Solyc12g044640.2 Solanum lycopersicum HOM05D005962 ORTHO05D007325 2.8e-82 309.3 238 66.4
Medtr8g015230 Medicago truncatula HOM05D005962 ORTHO05D007325 3.6e-82 308.9 239 67.4
Sc19g0007830 Simmondsia chinensis HOM05D005962 ORTHO05D007325 3.6e-82 308.9 240 66.2
Migut.I00971 Erythranthe guttata HOM05D005962 ORTHO05D007325 4.7e-82 308.5 229 68.1
PGR102G2175 Punica granatum HOM05D005962 ORTHO05D007325 6.1e-82 308.1 232 65.1
HPP92_007682 Vanilla planifolia HOM05D005962 ORTHO05D007325 6.1e-82 308.1 252 61.9
GSVIVG01016927001 Vitis vinifera HOM05D005962 ORTHO05D007325 6.1e-82 308.1 227 67.4
CAN.G1143.30 Capsicum annuum HOM05D005962 ORTHO05D007325 8.0e-82 307.8 234 65.8
Peaxi162Scf00038g01151 Petunia axillaris HOM05D005962 ORTHO05D007325 1.0e-81 307.4 243 65.0
PGSC0003DMG400026839 Solanum tuberosum HOM05D005962 ORTHO05D007325 1.0e-81 307.4 236 67.8
EL10Ac3g07358 Beta vulgaris HOM05D005962 ORTHO05D007325 4.0e-81 305.4 253 62.5
CSS0027495 Camellia sinensis var. sinensis HOM05D005962 ORTHO05D007325 6.8e-81 304.7 225 67.1
Sopen03g040020 Solanum pennellii HOM05D005962 ORTHO05D007325 8.9e-81 304.3 243 63.4
Sopen12g023060 Solanum pennellii HOM05D005962 ORTHO05D007325 2.0e-80 303.1 236 67.8
SalBow6G5073 Salvia bowleyana HOM05D005962 ORTHO05D007325 5.8e-80 301.6 228 65.8
ECA248G1573 Erigeron canadensis HOM05D005962 ORTHO05D007325 9.8e-80 300.8 239 64.0
unitig_32.g10986 Utricularia gibba HOM05D005962 ORTHO05D007325 9.8e-80 300.8 237 65.4
AUR62020986 Chenopodium quinoa HOM05D005962 ORTHO05D007325 2.9e-79 299.3 237 64.1
Os06g0217500 Oryza sativa ssp. japonica HOM05D005962 ORTHO05D007325 4.9e-79 298.5 243 60.9
Nitab4.5_0002423g0030 Nicotiana tabacum HOM05D005962 ORTHO05D007325 1.1e-78 297.4 235 66.0
Lsat_1_v5_gn_5_181040 Lactuca sativa HOM05D005962 ORTHO05D007325 1.9e-78 296.6 232 64.2
FvH4_6g32730 Fragaria vesca HOM05D005962 ORTHO05D007325 9.2e-78 294.3 233 63.5
FAN05G1114 Fragaria x ananassa HOM05D005962 ORTHO05D007325 1.6e-77 293.5 233 63.5
Ca_23283_v3 Cicer arietinum L. HOM05D005962 ORTHO05D007325 2.7e-77 292.7 241 65.1
Dinv37956 Davidia involucrata HOM05D005962 ORTHO05D007325 4.6e-77 292.0 211 70.1
AUR62018448 Chenopodium quinoa HOM05D005962 ORTHO05D007325 6.0e-77 291.6 237 63.3
RcHm_v2.0_Chr2g0141751 Rosa chinensis HOM05D005962 ORTHO05D007325 6.0e-77 291.6 233 62.2
SHI11207 Sapria himalayana HOM05D005962 ORTHO05D007325 1.3e-76 290.4 254 58.3
Zm00001eb372970 Zea mays HOM05D005962 ORTHO05D007325 1.3e-76 290.4 233 62.7
Nitab4.5_0001172g0180 Nicotiana tabacum HOM05D005962 ORTHO05D007325 1.7e-76 290.0 237 65.4
PSO210G0258 Papaver somniferum HOM05D005962 ORTHO05D007325 3.0e-76 289.3 244 59.4
PSO210G7608 Papaver somniferum HOM05D005962 ORTHO05D007325 3.0e-76 289.3 244 59.4
FAN02G1749 Fragaria x ananassa HOM05D005962 ORTHO05D007325 1.5e-75 287.0 233 62.2
FAN09G1055 Fragaria x ananassa HOM05D005962 ORTHO05D007325 7.3e-75 284.6 242 59.9
Solyc03g121210.4 Solanum lycopersicum HOM05D005962 ORTHO05D007325 1.6e-74 283.5 205 65.9
SGA_v2.0_scaffold45G16998 Striga asiatica HOM05D005962 ORTHO05D007325 1.1e-70 270.8 192 68.2
HanXRQChr15g0489361 Helianthus annuus HOM05D005962 ORTHO05D007325 7.8e-69 264.6 246 58.5
Gohir.A01G226000 Gossypium hirsutum HOM05D005962 ORTHO05D007325 5.1e-68 261.9 190 67.9
ATR0705G221 Amborella trichopoda HOM05D005962 ORTHO05D007325 3.5e-61 239.2 158 72.2
Cpa.g.sc131.1 Carica papaya HOM05D005962 ORTHO05D007325 1.3e-60 237.3 151 74.2
Migut.I00969 Erythranthe guttata HOM05D005962 ORTHO05D007325 2.5e-59 233.0 140 77.1
Migut.O00801 Erythranthe guttata HOM05D005962 ORTHO05D007325 3.3e-59 232.6 137 78.1
Ah.04g150140 Amaranthus hybridus HOM05D005962 ORTHO05D007325 5.6e-59 231.9 150 71.3
Mapoly0012s0176 Marchantia polymorpha HOM05D005962 ORTHO05D007325 4.4e-56 222.2 255 49.4
AagrBONN_evm.TU.Sc2ySwM_362.1658 Anthoceros agrestis HOM05D005962 ORTHO05D007325 9.9e-56 221.1 185 58.9
Pp3c11_22580 Physcomitrium patens HOM05D005962 ORTHO05D007325 2.4e-54 216.5 247 48.2
TPR.G39766 Trifolium pratense HOM05D005962 ORTHO05D007325 3.2e-54 216.1 184 59.8
SMO143G0120 Selaginella moellendorffii HOM05D005962 ORTHO05D007325 8.7e-52 208.0 189 58.7
Cfa019373 Carpinus fangiana HOM05D005962 ORTHO05D007325 5.6e-51 205.3 171 62.0
Lj5A50T68 Lonicera japonica HOM05D005962 ORTHO05D007325 4.0e-49 199.1 174 62.1
MD14G1079700 Malus domestica HOM05D005962 ORTHO05D007325 6.9e-49 198.4 169 64.5
CBR_g22489 Chara braunii HOM05D005962 ORTHO05D007325 7.6e-40 168.3 256 40.2
Medtr0361s0030 Medicago truncatula HOM05D005962 ORTHO05D007325 6.7e-28 128.6 103 60.2
QL05p018100 Quercus lobata HOM05D005962 ORTHO05D007325 4.0e-25 119.4 92 65.2
Lj5C50T14 Lonicera japonica HOM05D005962 ORTHO05D007325 9.0e-25 118.2 83 71.1
SEGI_18792 Sequoiadendron giganteum HOM05D005962 ORTHO05D007325 1.5e-24 117.5 78 65.4
Cfa019374 Carpinus fangiana HOM05D005962 ORTHO05D007325 2.2e-23 113.6 58 84.5
Lj3g0016976 Lotus japonicus HOM05D005962 ORTHO05D007325 6.0e-21 105.5 186 42.5
Lsat_1_v5_gn_2_99820 Lactuca sativa HOM05D005962 ORTHO05D007325 3.0e-20 103.2 74 67.6
Dinv30416 Davidia involucrata HOM05D005962 ORTHO05D007325 8.7e-20 101.7 219 33.8
RcHm_v2.0_Chr5g0064381 Rosa chinensis HOM05D005962 ORTHO05D007325 2.2e-18 97.1 85 54.1
BraA09t39590Z Brassica rapa HOM05D002393 ORTHO05D002845 3.1e-17 93.2 65 76.9
PRCOL_00006676 Prasinoderma coloniale HOM05D001184 ORTHO05D008450 9.0e-17 91.7 133 36.1
TAR623G1541 Trochodendron aralioides HOM05D005962 ORTHO05D007325 2.0e-16 90.5 58 70.7
C09p14660 Brassica napus HOM05D017738 ORTHO05D042708 2.5e-14 83.6 93 53.8
BolC9t54371H Brassica oleracea HOM05D017738 ORTHO05D042708 2.5e-14 83.6 118 47.5
Nitab4.5_0008212g0010 Nicotiana tabacum HOM05D005962 ORTHO05D007325 4.6e-13 79.3 202 34.2
Zm00001eb084330 Zea mays HOM05D005962 ORTHO05D007325 6.1e-13 79.0 57 61.4
Ah.04g150130 Amaranthus hybridus HOM05D000535 ORTHO05D000427 1.0e-12 78.2 91 50.5
Zm00001eb192830 Zea mays HOM05D005962 ORTHO05D007325 2.3e-12 77.0 58 58.6
TAR636G3265 Trochodendron aralioides HOM05D005962 ORTHO05D007325 3.9e-12 76.3 56 62.5
TAR624G0741 Trochodendron aralioides HOM05D005962 ORTHO05D007325 6.7e-12 75.5 145 38.6
Pp3c7_2870 Physcomitrium patens HOM05D005962 ORTHO05D007325 8.8e-12 75.1 258 29.1
BolC4t22784H Brassica oleracea HOM05D017738 ORTHO05D024470 5.5e-06 55.8 65 52.3


User provided reference genes

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