Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g28071 Brassica carinata HOM05D003406 ORTHO05D004026 2.5e-56 221.9 112 100.0
C07p49630 Brassica napus HOM05D003406 ORTHO05D004026 4.1e-38 161.4 121 74.4
C05p40950 Brassica napus HOM05D003406 ORTHO05D004026 2.0e-32 142.5 73 98.6
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 1.1e-22 110.2 87 69.0
BcaNung01149 Brassica carinata HOM05D003406 ORTHO05D004026 2.4e-22 109.0 87 67.8
A02p01970 Brassica napus HOM05D003406 ORTHO05D004026 2.4e-22 109.0 87 69.0
BraA02t05170Z Brassica rapa HOM05D003406 ORTHO05D004026 2.4e-22 109.0 87 69.0
BolC2t06560H Brassica oleracea HOM05D003406 ORTHO05D004026 3.1e-22 108.6 87 67.8
BcaNung01887 Brassica carinata HOM05D003406 ORTHO05D004026 4.1e-22 108.2 87 66.7
A03p06010 Brassica napus HOM05D003406 ORTHO05D004026 1.2e-21 106.7 87 66.7
BcaB01g05356 Brassica carinata HOM05D003406 ORTHO05D004026 2.0e-21 105.9 89 67.4
Thhalv10012890m.g Eutrema salsugineum HOM05D003406 ORTHO05D004026 2.6e-21 105.5 56 92.9
C03p07050 Brassica napus HOM05D003406 ORTHO05D004026 3.5e-21 105.1 87 65.5
Sp6g30540 Schrenkiella parvula HOM05D003406 ORTHO05D004026 2.2e-20 102.4 87 65.5
AT5G13480 Arabidopsis thaliana HOM05D003406 ORTHO05D004026 5.0e-20 101.3 56 89.3
Carub.0006s1164 Capsella rubella HOM05D003406 ORTHO05D004026 5.0e-20 101.3 56 89.3
THA.LOC104826724 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 8.5e-20 100.5 56 85.7
Aa31LG11G7380 Aethionema arabicum HOM05D003406 ORTHO05D004026 1.5e-19 99.8 56 87.5
AL6G24100 Arabidopsis lyrata HOM05D003406 ORTHO05D004026 1.5e-19 99.8 56 87.5
BolC3t13203H Brassica oleracea HOM05D003406 ORTHO05D004026 9.4e-19 97.1 97 58.8
MD07G1038200 Malus domestica HOM05D003406 ORTHO05D004026 1.6e-18 96.3 56 82.1
Hund13347 Selenicereus undatus HOM05D003406 ORTHO05D004026 1.6e-18 96.3 56 80.4
Ah.10g030390 Amaranthus hybridus HOM05D003406 ORTHO05D004026 2.1e-18 95.9 56 80.4
Atru.chr12.1360 Acer truncatum HOM05D003406 ORTHO05D004026 2.7e-18 95.5 56 82.1
AUR62037187 Chenopodium quinoa HOM05D003406 ORTHO05D004026 2.7e-18 95.5 56 80.4
MELO3C005161.2 Cucumis melo HOM05D003406 ORTHO05D004026 2.7e-18 95.5 71 70.4
CsaV3_5G024420 Cucumis sativus L. HOM05D003406 ORTHO05D004026 2.7e-18 95.5 56 80.4
QL04p014603 Quercus lobata HOM05D003406 ORTHO05D004026 2.7e-18 95.5 71 71.8
QL04p014965 Quercus lobata HOM05D003406 ORTHO05D004026 2.7e-18 95.5 71 71.8
Sed0018149 Sechium edule HOM05D003406 ORTHO05D004026 2.7e-18 95.5 71 70.4
Ciclev10004445m.g Citrus clementina HOM05D003406 ORTHO05D004026 3.6e-18 95.1 71 71.8
ECA248G2072 Erigeron canadensis HOM05D003406 ORTHO05D004026 3.6e-18 95.1 56 82.1
BraA03t09938Z Brassica rapa HOM05D003406 ORTHO05D004026 8.0e-18 94.0 109 53.2
Cfa010885 Carpinus fangiana HOM05D003406 ORTHO05D004026 8.0e-18 94.0 56 80.4
FvH4_7g02880 Fragaria vesca HOM05D003406 ORTHO05D004026 8.0e-18 94.0 56 80.4
FAN06G4607 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.0e-18 94.0 56 80.4
Potri.001G026800 Populus trichocarpa HOM05D003406 ORTHO05D004026 8.0e-18 94.0 56 82.1
DCAR_031832 Daucus carota HOM05D003406 ORTHO05D004026 1.0e-17 93.6 56 80.4
Hma1.2p1_1396F.1_g280640 Hydrangea macrophylla HOM05D003406 ORTHO05D004026 1.0e-17 93.6 71 70.4
Lsat_1_v5_gn_1_115021 Lactuca sativa HOM05D003406 ORTHO05D004026 1.0e-17 93.6 56 80.4
PSO561G0002 Papaver somniferum HOM05D003406 ORTHO05D004026 1.0e-17 93.6 56 78.6
THA.LOC104819128 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 1.0e-17 93.6 56 80.4
GSVIVG01013527001 Vitis vinifera HOM05D003406 ORTHO05D004026 1.0e-17 93.6 58 79.3
CiPaw.13G012800 Carya illinoinensis HOM05D003406 ORTHO05D004026 1.4e-17 93.2 71 69.0
HanXRQChr01g0004511 Helianthus annuus HOM05D003406 ORTHO05D004026 1.4e-17 93.2 56 80.4
MD02G1288700 Malus domestica HOM05D003406 ORTHO05D004026 1.4e-17 93.2 56 80.4
Prupe.2G034300 Prunus persica HOM05D003406 ORTHO05D004026 1.4e-17 93.2 56 80.4
PGR031G1802 Punica granatum HOM05D003406 ORTHO05D004026 1.4e-17 93.2 71 70.4
Sc14g0005750 Simmondsia chinensis HOM05D003406 ORTHO05D004026 1.4e-17 93.2 56 78.6
Actinidia06245 Actinidia chinensis HOM05D003406 ORTHO05D004026 1.8e-17 92.8 71 70.4
Nn7g36639 Nelumbo nucifera HOM05D003406 ORTHO05D004026 1.8e-17 92.8 56 78.6
TAR369G0157 Trochodendron aralioides HOM05D003406 ORTHO05D004026 1.8e-17 92.8 56 78.6
CiPaw.14G007200 Carya illinoinensis HOM05D003406 ORTHO05D004026 3.0e-17 92.0 56 76.8
Eucgr.G03238 Eucalyptus grandis HOM05D003406 ORTHO05D004026 3.0e-17 92.0 56 80.4
FAN03G3378 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.0e-17 92.0 56 78.6
Manes.11G004700 Manihot esculenta HOM05D003406 ORTHO05D004026 3.0e-17 92.0 56 78.6
Aqoxy4G02704 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 4.0e-17 91.7 56 76.8
Rhsim07G0066700 Rhododendron simsii HOM05D003406 ORTHO05D004026 4.0e-17 91.7 56 82.1
Dinv32032 Davidia involucrata HOM05D003406 ORTHO05D004026 5.2e-17 91.3 71 69.0
HanXRQChr15g0463071 Helianthus annuus HOM05D003406 ORTHO05D004026 5.2e-17 91.3 56 78.6
PSO063G0746 Papaver somniferum HOM05D003406 ORTHO05D004026 5.2e-17 91.3 56 76.8
CANSAT25G0328 Cannabis sativa HOM05D003406 ORTHO05D004026 8.8e-17 90.5 56 78.6
Potri.003G197900 Populus trichocarpa HOM05D003406 ORTHO05D004026 1.2e-16 90.1 56 78.6
Potri.T125206 Populus trichocarpa HOM05D003406 ORTHO05D004026 1.2e-16 90.1 56 78.6
SGA_v2.0_scaffold124G33625 Striga asiatica HOM05D003406 ORTHO05D004026 1.2e-16 90.1 56 78.6
VMungo1127G0085 Vigna mungo HOM05D003406 ORTHO05D004026 1.2e-16 90.1 56 76.8
Phvul.011G207400 Phaseolus vulgaris HOM05D003406 ORTHO05D004026 1.5e-16 89.7 56 76.8
Nitab4.5_0000151g0240 Nicotiana tabacum HOM05D003406 ORTHO05D004026 2.0e-16 89.4 56 78.6
RcHm_v2.0_Chr1g0323831 Rosa chinensis HOM05D003406 ORTHO05D004026 2.0e-16 89.4 56 76.8
Solyc08g067040.4 Solanum lycopersicum HOM05D003406 ORTHO05D004026 2.0e-16 89.4 56 78.6
Sopen08g020990 Solanum pennellii HOM05D003406 ORTHO05D004026 2.0e-16 89.4 56 78.6
Duzib114G0281 Durio zibethinus HOM05D003406 ORTHO05D004026 2.6e-16 89.0 71 67.6
Thecc.10G162300 Theobroma cacao HOM05D003406 ORTHO05D004026 2.6e-16 89.0 71 67.6
arahy.Tifrunner.gnm1.ann1.07MYST Arachis hypogaea HOM05D003406 ORTHO05D004026 3.3e-16 88.6 56 75.0
arahy.Tifrunner.gnm1.ann1.P8HZNX Arachis hypogaea HOM05D003406 ORTHO05D004026 3.3e-16 88.6 56 75.0
TWI63G0701 Tripterygium wilfordii HOM05D003406 ORTHO05D004026 3.3e-16 88.6 71 66.2
vmacro13749 Vaccinium macrocarpon HOM05D003406 ORTHO05D004026 3.3e-16 88.6 56 76.8
Nitab4.5_0001669g0120 Nicotiana tabacum HOM05D003406 ORTHO05D004026 4.4e-16 88.2 56 76.8
HPP92_025009 Vanilla planifolia HOM05D003406 ORTHO05D004026 4.4e-16 88.2 79 64.6
EL10Ac2g02817 Beta vulgaris HOM05D003406 ORTHO05D004026 5.7e-16 87.8 71 66.2
Os01g0951000 Oryza sativa ssp. japonica HOM05D003406 ORTHO05D004026 5.7e-16 87.8 56 73.2
Ca_23943_v3 Cicer arietinum L. HOM05D003406 ORTHO05D004026 7.5e-16 87.4 56 75.0
CSS0014544 Camellia sinensis var. sinensis HOM05D003406 ORTHO05D004026 9.7e-16 87.0 56 75.0
Cc00_g06910 Coffea canephora HOM05D003406 ORTHO05D004026 9.7e-16 87.0 71 66.2
Dinv09276 Davidia involucrata HOM05D003406 ORTHO05D004026 9.7e-16 87.0 71 64.8
Duzib106G0689 Durio zibethinus HOM05D003406 ORTHO05D004026 9.7e-16 87.0 56 75.0
Lalb_Chr01g0007801 Lupinus albus HOM05D003406 ORTHO05D004026 9.7e-16 87.0 58 75.9
Zm00001eb140970 Zea mays HOM05D003406 ORTHO05D004026 9.7e-16 87.0 56 73.2
unitig_26.g9605 Utricularia gibba HOM05D003406 ORTHO05D004026 1.3e-15 86.7 71 64.8
Haze_03074 Corylus avellana HOM05D003406 ORTHO05D004026 1.7e-15 86.3 53 77.4
Gohir.A10G183800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 1.7e-15 86.3 71 67.6
Gorai.011G213900 Gossypium raimondii HOM05D003406 ORTHO05D004026 1.7e-15 86.3 71 67.6
SalBow5G0382 Salvia bowleyana HOM05D003406 ORTHO05D004026 1.7e-15 86.3 71 64.8
SalBow5G3900 Salvia bowleyana HOM05D003406 ORTHO05D004026 1.7e-15 86.3 71 64.8
Psat4g192120 Pisum sativum HOM05D003406 ORTHO05D004026 2.8e-15 85.5 56 75.0
AUR62026878 Chenopodium quinoa HOM05D003406 ORTHO05D004026 3.7e-15 85.1 56 75.0
Gohir.D10G190800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 4.8e-15 84.7 71 66.2
Mapoly0029s0111 Marchantia polymorpha HOM05D003406 ORTHO05D004026 4.8e-15 84.7 56 73.2
Medtr8g038550 Medicago truncatula HOM05D003406 ORTHO05D004026 4.8e-15 84.7 56 75.0
ATR0745G072 Amborella trichopoda HOM05D003406 ORTHO05D004026 6.3e-15 84.3 71 60.6
Glyma.15G236500 Glycine max HOM05D003406 ORTHO05D004026 6.3e-15 84.3 56 75.0
Migut.B01223 Erythranthe guttata HOM05D003406 ORTHO05D004026 1.4e-14 83.2 56 73.2
MSTRG.16987 Avicennia marina HOM05D003406 ORTHO05D004026 1.8e-14 82.8 56 71.4
Pp3c16_16500 Physcomitrium patens HOM05D003406 ORTHO05D004026 1.8e-14 82.8 56 71.4
Lalb_Chr19g0132381 Lupinus albus HOM05D003406 ORTHO05D004026 2.4e-14 82.4 58 74.1
Peaxi162Scf00341g00714 Petunia axillaris HOM05D003406 ORTHO05D004026 4.1e-14 81.6 56 73.2
Glyma.13G198200 Glycine max HOM05D003406 ORTHO05D004026 5.3e-14 81.3 56 73.2
Actinidia10165 Actinidia chinensis HOM05D003406 ORTHO05D004026 9.1e-14 80.5 65 66.2
ClCG01G007460 Citrullus lanatus HOM05D003406 ORTHO05D004026 2.0e-13 79.3 103 48.5
RcHm_v2.0_Chr5g0010661 Rosa chinensis HOM05D003406 ORTHO05D004026 3.8e-12 75.1 55 65.5
SEGI_13935 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 8.5e-12 73.9 56 66.1
Manes.04G160100 Manihot esculenta HOM05D003406 ORTHO05D004026 8.0e-10 67.4 38 81.6
SMO353G0072 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 1.4e-09 66.6 60 51.7
AagrBONN_evm.TU.Sc2ySwM_369.461 Anthoceros agrestis HOM05D003406 ORTHO05D004026 3.0e-09 65.5 57 54.4
Sabra01G0019600 Salix brachista HOM05D003406 ORTHO05D004026 3.0e-09 65.5 96 44.8
FAN19G0629 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.0e-09 65.1 56 58.9
Sabra03G0147300 Salix brachista HOM05D003406 ORTHO05D004026 5.2e-09 64.7 91 46.2
FAN28G2604 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.2e-08 63.5 56 58.9
FAN26G1924 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.6e-08 62.4 52 61.5
SEGI_28398 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 4.4e-08 61.6 43 67.4
SHI03989 Sapria himalayana HOM05D003406 ORTHO05D004026 5.7e-08 61.2 70 48.6
C03p43350 Brassica napus HOM05D003406 ORTHO05D004026 7.5e-08 60.8 31 96.8
BolC3t16605H Brassica oleracea HOM05D003406 ORTHO05D004026 7.5e-08 60.8 31 96.8
BolC5t32836H Brassica oleracea HOM05D055352 ORTHO05D039624 7.5e-08 60.8 95 45.3
CBR_g22487 Chara braunii HOM05D003406 ORTHO05D004026 3.7e-07 58.5 56 51.8
CBR_g16799 Chara braunii HOM05D003406 ORTHO05D004026 6.3e-07 57.8 56 51.8
MCO04G412 Micromonas commoda HOM05D003406 ORTHO05D004026 6.3e-07 57.8 56 50.0
TPR.G20465 Trifolium pratense HOM05D003406 ORTHO05D004026 4.1e-06 55.1 38 71.1


User provided reference genes

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