Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g27847 Brassica carinata HOM05D000366 ORTHO05D027189 1.6e-38 162.2 77 100.0
C05p38460 Brassica napus HOM05D000366 ORTHO05D027189 1.6e-38 162.2 77 100.0
Thhalv10005427m.g Eutrema salsugineum HOM05D000366 ORTHO05D000437 6.5e-27 123.6 77 77.9
Sp2g26960 Schrenkiella parvula HOM05D000366 ORTHO05D000437 4.6e-25 117.5 77 75.3
A09p08460 Brassica napus HOM05D000366 ORTHO05D000437 1.5e-23 112.5 77 74.0
BraA09t36496Z Brassica rapa HOM05D000366 ORTHO05D000437 1.5e-23 112.5 77 74.0
BcaNung04635 Brassica carinata HOM05D000366 ORTHO05D000437 2.5e-23 111.7 77 72.7
BcaC04g23348 Brassica carinata HOM05D000366 ORTHO05D000437 1.6e-22 109.0 77 70.1
BolC9t53869H Brassica oleracea HOM05D000366 ORTHO05D000437 1.6e-22 109.0 77 70.1
C09p09580 Brassica napus HOM05D000366 ORTHO05D000437 4.8e-22 107.5 77 68.8
AL8G41130 Arabidopsis lyrata HOM05D000366 ORTHO05D000437 1.1e-21 106.3 81 67.9
AT5G63900 Arabidopsis thaliana HOM05D000366 ORTHO05D000437 1.8e-21 105.5 81 66.7
CARHR277800 Cardamine hirsuta HOM05D000366 ORTHO05D000437 1.8e-21 105.5 72 73.6
Carub.0008s2467 Capsella rubella HOM05D000366 ORTHO05D000437 6.9e-21 103.6 81 69.1
BcaNung04626 Brassica carinata HOM05D000366 ORTHO05D027189 3.8e-19 97.8 65 70.8
BcaNung04628 Brassica carinata HOM05D000366 ORTHO05D000437 3.8e-19 97.8 65 70.8
C09p09590 Brassica napus HOM05D000366 ORTHO05D000437 3.8e-19 97.8 77 63.6
THA.LOC104825817 Tarenaya hassleriana HOM05D000366 ORTHO05D000437 3.8e-19 97.8 76 65.8
A06p30520 Brassica napus HOM05D000366 ORTHO05D000437 1.1e-18 96.3 75 65.3
BraA06t26001Z Brassica rapa HOM05D000366 ORTHO05D000437 1.1e-18 96.3 75 65.3
Aa31LG1G17990 Aethionema arabicum HOM05D000366 ORTHO05D000437 1.4e-18 95.9 77 63.6
C03p62510 Brassica napus HOM05D000366 ORTHO05D000437 3.2e-18 94.7 77 63.6
BolC3t18508H Brassica oleracea HOM05D000366 ORTHO05D000437 3.2e-18 94.7 77 63.6
BcaC01g02643 Brassica carinata HOM05D000366 ORTHO05D000437 9.3e-18 93.2 77 62.3
BraA05t21361Z Brassica rapa HOM05D000366 ORTHO05D027189 4.8e-14 80.9 40 92.5
Sed0025229 Sechium edule HOM05D000366 ORTHO05D000437 8.5e-11 70.1 66 51.5
CiPaw.07G172300 Carya illinoinensis HOM05D000366 ORTHO05D000437 1.1e-10 69.7 74 47.3
Gohir.A07G104600 Gossypium hirsutum HOM05D000366 ORTHO05D000437 1.4e-10 69.3 75 48.0
Lsat_1_v5_gn_8_70821 Lactuca sativa HOM05D000366 ORTHO05D000437 1.4e-10 69.3 75 45.3
Peaxi162Scf00540g00214 Petunia axillaris HOM05D000366 ORTHO05D000437 2.5e-10 68.6 76 47.4
HanXRQChr01g0008941 Helianthus annuus HOM05D000366 ORTHO05D000437 3.2e-10 68.2 63 46.0
CAN.G394.137 Capsicum annuum HOM05D000366 ORTHO05D000437 4.2e-10 67.8 65 49.2
Prupe.1G423000 Prunus persica HOM05D000366 ORTHO05D000437 4.2e-10 67.8 73 43.8
PGR010G0007 Punica granatum HOM05D000366 ORTHO05D000437 4.2e-10 67.8 65 50.8
SGA_v2.0_scaffold120G32900 Striga asiatica HOM05D000366 ORTHO05D000437 4.2e-10 67.8 63 50.8
Glyma.14G194800 Glycine max HOM05D000366 ORTHO05D000437 5.5e-10 67.4 75 46.7
Nitab4.5_0000719g0100 Nicotiana tabacum HOM05D000366 ORTHO05D000437 5.5e-10 67.4 76 44.7
Nitab4.5_0000839g0030 Nicotiana tabacum HOM05D000366 ORTHO05D000437 5.5e-10 67.4 76 46.1
Nitab4.5_0001371g0040 Nicotiana tabacum HOM05D000366 ORTHO05D000437 5.5e-10 67.4 76 46.1
SGA_v2.0_scaffold144G35867 Striga asiatica HOM05D000366 ORTHO05D000437 5.5e-10 67.4 63 49.2
MELO3C016819.2 Cucumis melo HOM05D000366 ORTHO05D000437 9.4e-10 66.6 66 48.5
FAN15G2715 Fragaria x ananassa HOM05D000366 ORTHO05D000437 9.4e-10 66.6 72 48.6
FAN27G3107 Fragaria x ananassa HOM05D000366 ORTHO05D000437 9.4e-10 66.6 72 48.6
PGR119G0306 Punica granatum HOM05D000366 ORTHO05D000437 9.4e-10 66.6 65 50.8
Atru.chr8.1441 Acer truncatum HOM05D000366 ORTHO05D000437 1.2e-09 66.2 72 45.8
MELO3C016820.2 Cucumis melo HOM05D000366 ORTHO05D000437 1.2e-09 66.2 66 47.0
FvH4_2g33101 Fragaria vesca HOM05D000366 ORTHO05D000437 1.2e-09 66.2 71 49.3
FAN24G0146 Fragaria x ananassa HOM05D000366 ORTHO05D000437 1.2e-09 66.2 71 49.3
Medtr5g071340 Medicago truncatula HOM05D000366 ORTHO05D000437 1.2e-09 66.2 75 48.0
Gohir.D07G108600 Gossypium hirsutum HOM05D000366 ORTHO05D000437 1.6e-09 65.9 75 46.7
Gorai.001G116700 Gossypium raimondii HOM05D000366 ORTHO05D000437 1.6e-09 65.9 75 46.7
Psat2g057000 Pisum sativum HOM05D000366 ORTHO05D000437 1.6e-09 65.9 75 46.7
Glyma.02G227900 Glycine max HOM05D000366 ORTHO05D000437 2.1e-09 65.5 75 46.7
Lj1C131G7 Lonicera japonica HOM05D000366 ORTHO05D000437 2.1e-09 65.5 63 50.8
Lalb_Chr17g0345161 Lupinus albus HOM05D000366 ORTHO05D000437 2.1e-09 65.5 75 45.3
Cpa.g.sc142.23 Carica papaya HOM05D000366 ORTHO05D000437 2.7e-09 65.1 79 48.1
Haze_22394 Corylus avellana HOM05D000366 ORTHO05D000437 2.7e-09 65.1 66 47.0
Haze_22402 Corylus avellana HOM05D000366 ORTHO05D000437 2.7e-09 65.1 66 47.0
DCAR_004481 Daucus carota HOM05D000366 ORTHO05D000437 2.7e-09 65.1 73 43.8
RcHm_v2.0_Chr6g0309551 Rosa chinensis HOM05D000366 ORTHO05D000437 2.7e-09 65.1 77 42.9
Migut.N00775 Erythranthe guttata HOM05D000366 ORTHO05D000437 3.6e-09 64.7 63 50.8
Nitab4.5_0000684g0160 Nicotiana tabacum HOM05D000366 ORTHO05D000437 3.6e-09 64.7 76 44.7
Cfa013779 Carpinus fangiana HOM05D000366 ORTHO05D000437 4.6e-09 64.3 72 45.8
Ciclev10013761m.g Citrus clementina HOM05D000366 ORTHO05D000437 4.6e-09 64.3 65 49.2
ECA247G0378 Erigeron canadensis HOM05D000366 ORTHO05D000437 4.6e-09 64.3 74 41.9
FAN20G2587 Fragaria x ananassa HOM05D000366 ORTHO05D000437 4.6e-09 64.3 72 47.2
HanXRQChr09g0261771 Helianthus annuus HOM05D000366 ORTHO05D000437 4.6e-09 64.3 75 42.7
Lsat_1_v5_gn_5_160261 Lactuca sativa HOM05D000366 ORTHO05D000437 4.6e-09 64.3 63 52.4
Ca_26261_v3 Cicer arietinum L. HOM05D000366 ORTHO05D000437 6.1e-09 63.9 63 49.2
Haze_22437 Corylus avellana HOM05D000366 ORTHO05D000437 6.1e-09 63.9 72 45.8
Duzib093G1602 Durio zibethinus HOM05D000366 ORTHO05D000437 6.1e-09 63.9 63 47.6
ECA236G5035 Erigeron canadensis HOM05D000366 ORTHO05D000437 6.1e-09 63.9 76 42.1
Thecc.09G299000 Theobroma cacao HOM05D000366 ORTHO05D000437 6.1e-09 63.9 75 46.7
Cfa013742 Carpinus fangiana HOM05D000366 ORTHO05D000437 7.9e-09 63.5 66 45.5
CsaV3_4G035050 Cucumis sativus L. HOM05D000366 ORTHO05D000437 7.9e-09 63.5 66 43.9
DCAR_007366 Daucus carota HOM05D000366 ORTHO05D000437 7.9e-09 63.5 64 50.0
TWI79G0902 Tripterygium wilfordii HOM05D000366 ORTHO05D000437 7.9e-09 63.5 64 50.0
FvH4_3g44310 Fragaria vesca HOM05D000366 ORTHO05D000437 1.0e-08 63.2 62 51.6
FAN11G0256 Fragaria x ananassa HOM05D000366 ORTHO05D000090 1.0e-08 63.2 62 51.6
QL12p038082 Quercus lobata HOM05D000366 ORTHO05D000437 1.0e-08 63.2 65 49.2
arahy.Tifrunner.gnm1.ann1.J886VA Arachis hypogaea HOM05D000366 ORTHO05D000437 1.4e-08 62.8 63 49.2
Ca_14957_v3 Cicer arietinum L. HOM05D000366 ORTHO05D000437 1.4e-08 62.8 63 47.6
ClCG05G020610 Citrullus lanatus HOM05D000366 ORTHO05D000437 1.4e-08 62.8 66 43.9
Duzib116G0391 Durio zibethinus HOM05D000366 ORTHO05D000437 1.4e-08 62.8 63 49.2
ECA248G0431 Erigeron canadensis HOM05D000366 ORTHO05D000437 1.4e-08 62.8 64 46.9
FAN21G1554 Fragaria x ananassa HOM05D000366 ORTHO05D000437 1.4e-08 62.8 62 51.6
FAN25G2814 Fragaria x ananassa HOM05D000366 ORTHO05D000437 1.4e-08 62.8 62 51.6
Peaxi162Scf00207g00633 Petunia axillaris HOM05D000366 ORTHO05D000437 1.4e-08 62.8 76 44.7
PGSC0003DMG400016917 Solanum tuberosum HOM05D000366 ORTHO05D000437 1.4e-08 62.8 76 42.1
Ah.01g021980 Amaranthus hybridus HOM05D000366 ORTHO05D000437 1.8e-08 62.4 63 47.6
FvH4_2g33110 Fragaria vesca HOM05D000366 ORTHO05D000437 1.8e-08 62.4 75 41.3
Medtr3g464550 Medicago truncatula HOM05D000366 ORTHO05D000437 1.8e-08 62.4 63 47.6
Solyc09g031580.3 Solanum lycopersicum HOM05D000366 ORTHO05D000437 1.8e-08 62.4 76 42.1
Sopen09g013940 Solanum pennellii HOM05D000366 ORTHO05D000437 1.8e-08 62.4 76 42.1
PGSC0003DMG400022079 Solanum tuberosum HOM05D000366 ORTHO05D000437 1.8e-08 62.4 76 40.8
SGA_v2.0_scaffold111G31378 Striga asiatica HOM05D000366 ORTHO05D000437 1.8e-08 62.4 63 49.2
THA.LOC104810704 Tarenaya hassleriana HOM05D000366 ORTHO05D000437 1.8e-08 62.4 63 49.2
EL10Ac7g16192 Beta vulgaris HOM05D000366 ORTHO05D000437 2.3e-08 62.0 63 47.6
FvH4_3g38930 Fragaria vesca HOM05D000366 ORTHO05D000437 2.3e-08 62.0 62 51.6
Sed0014116 Sechium edule HOM05D000366 ORTHO05D000437 2.3e-08 62.0 63 47.6
Solyc03g071550.3 Solanum lycopersicum HOM05D000366 ORTHO05D000437 2.3e-08 62.0 76 42.1
Sopen03g019830 Solanum pennellii HOM05D000366 ORTHO05D000437 2.3e-08 62.0 76 42.1
Lsat_1_v5_gn_5_173100 Lactuca sativa HOM05D000366 ORTHO05D000437 3.0e-08 61.6 69 44.9
Nn2g10878 Nelumbo nucifera HOM05D000366 ORTHO05D000437 3.0e-08 61.6 65 49.2
Thecc.08G089000 Theobroma cacao HOM05D000366 ORTHO05D000437 3.0e-08 61.6 63 47.6
AUR62020153 Chenopodium quinoa HOM05D000366 ORTHO05D000437 3.9e-08 61.2 63 50.8
FAN11G2311 Fragaria x ananassa HOM05D000366 ORTHO05D000437 3.9e-08 61.2 62 51.6
THA.LOC104815060 Tarenaya hassleriana HOM05D000366 ORTHO05D000437 3.9e-08 61.2 66 45.5
Atru.chr3.4178 Acer truncatum HOM05D000043 ORTHO05D000437 5.1e-08 60.8 63 47.6
AUR62001624 Chenopodium quinoa HOM05D000366 ORTHO05D000437 5.1e-08 60.8 63 49.2
LjContig00141g0006273 Lotus japonicus HOM05D000366 ORTHO05D000437 5.1e-08 60.8 63 49.2
Phvul.008G260100 Phaseolus vulgaris HOM05D000366 ORTHO05D000437 5.1e-08 60.8 75 44.0
COL.COLO4_29891 Corchorus olitorius HOM05D000366 ORTHO05D000437 6.7e-08 60.5 63 47.6
FAN18G2936 Fragaria x ananassa HOM05D000366 ORTHO05D000437 6.7e-08 60.5 68 47.1
RcHm_v2.0_Chr6g0309571 Rosa chinensis HOM05D000366 ORTHO05D000437 6.7e-08 60.5 74 44.6
Sc21g0006460 Simmondsia chinensis HOM05D000366 ORTHO05D000437 6.7e-08 60.5 63 46.0
Zm00001eb013420 Zea mays HOM05D000366 ORTHO05D000437 6.7e-08 60.5 63 47.6
Ah.10g029430 Amaranthus hybridus HOM05D000366 ORTHO05D000437 8.8e-08 60.1 66 43.9
Ciclev10000745m.g Citrus clementina HOM05D000366 ORTHO05D000437 1.1e-07 59.7 63 49.2
DCAR_015648 Daucus carota HOM05D000366 ORTHO05D000437 1.1e-07 59.7 64 43.8
FAN04G0305 Fragaria x ananassa HOM05D000366 ORTHO05D000437 1.1e-07 59.7 68 47.1
Potri.002G118600 Populus trichocarpa HOM05D000366 ORTHO05D000437 1.1e-07 59.7 64 43.8
unitig_60.g25553 Utricularia gibba HOM05D000366 ORTHO05D000437 1.1e-07 59.7 73 39.7
Atru.chr13.829 Acer truncatum HOM05D000366 ORTHO05D000437 1.5e-07 59.3 63 44.4
FAN20G1618 Fragaria x ananassa HOM05D000366 ORTHO05D000437 1.5e-07 59.3 75 38.7
MD08G1084100 Malus domestica HOM05D000366 ORTHO05D000437 1.5e-07 59.3 64 43.8
Medtr5g024390 Medicago truncatula HOM05D000366 ORTHO05D000437 1.5e-07 59.3 63 42.9
Phvul.006G069100 Phaseolus vulgaris HOM05D000366 ORTHO05D000437 1.5e-07 59.3 76 42.1
Thecc.08G088900 Theobroma cacao HOM05D000366 ORTHO05D000437 1.5e-07 59.3 63 46.0
TAR628G0036 Trochodendron aralioides HOM05D000366 ORTHO05D000437 1.5e-07 59.3 63 46.0
Sopen06g033450 Solanum pennellii HOM05D000366 ORTHO05D000437 2.0e-07 58.9 62 46.8
Atru.chr3.4188 Acer truncatum HOM05D000366 ORTHO05D000437 2.6e-07 58.5 63 47.6
ECA248G2302 Erigeron canadensis HOM05D000366 ORTHO05D000437 2.6e-07 58.5 63 42.9
FAN13G1857 Fragaria x ananassa HOM05D000366 ORTHO05D000437 2.6e-07 58.5 68 47.1
Medtr3g103110 Medicago truncatula HOM05D000366 ORTHO05D000437 2.6e-07 58.5 63 44.4
BcaNung04625 Brassica carinata HOM05D000366 ORTHO05D000437 3.3e-07 58.2 77 46.8
ECA236G2630 Erigeron canadensis HOM05D000366 ORTHO05D000437 3.3e-07 58.2 63 46.0
Hund20988 Selenicereus undatus HOM05D000366 ORTHO05D000437 3.3e-07 58.2 63 44.4
ECA232G0324 Erigeron canadensis HOM05D000366 ORTHO05D000437 4.4e-07 57.8 63 47.6
VMungo0647G2119 Vigna mungo HOM05D000366 ORTHO05D000437 4.4e-07 57.8 63 44.4
CARHR272450 Cardamine hirsuta HOM05D000366 ORTHO05D000437 5.7e-07 57.4 64 45.3
Gohir.A02G081100 Gossypium hirsutum HOM05D000366 ORTHO05D000437 5.7e-07 57.4 63 42.9
CANSAT11G1377 Cannabis sativa HOM05D000366 ORTHO05D000437 7.4e-07 57.0 64 43.8
Medtr5g024500 Medicago truncatula HOM05D000366 ORTHO05D000437 7.4e-07 57.0 63 41.3
Medtr7g109640 Medicago truncatula HOM05D000366 ORTHO05D000437 7.4e-07 57.0 63 42.9
TAR623G0601 Trochodendron aralioides HOM05D000366 ORTHO05D000437 7.4e-07 57.0 65 43.1
Cpa.g.sc142.24 Carica papaya HOM05D000366 ORTHO05D000437 9.7e-07 56.6 65 41.5
Cc01_g14390 Coffea canephora HOM05D000366 ORTHO05D000437 9.7e-07 56.6 75 42.7
Gohir.D02G088800 Gossypium hirsutum HOM05D000366 ORTHO05D000437 9.7e-07 56.6 63 42.9
Gorai.005G099500 Gossypium raimondii HOM05D000366 ORTHO05D000437 9.7e-07 56.6 63 42.9
PSO017G6697 Papaver somniferum HOM05D000366 ORTHO05D000437 9.7e-07 56.6 63 44.4
PSO339G5412 Papaver somniferum HOM05D000366 ORTHO05D000437 9.7e-07 56.6 62 46.8
PSO801G0050 Papaver somniferum HOM05D000366 ORTHO05D000437 9.7e-07 56.6 62 46.8
Sabra02G0093100 Salix brachista HOM05D000366 ORTHO05D000437 9.7e-07 56.6 64 40.6
HPP92_023746 Vanilla planifolia HOM05D000366 ORTHO05D000437 9.7e-07 56.6 65 40.0
arahy.Tifrunner.gnm1.ann1.0R6TRT Arachis hypogaea HOM05D000366 ORTHO05D000437 1.7e-06 55.8 65 41.5
Eucgr.I00172 Eucalyptus grandis HOM05D000366 ORTHO05D000437 1.7e-06 55.8 63 47.6
MBI16_g44509_MAGBIO Magnolia biondii HOM05D000366 ORTHO05D000437 1.7e-06 55.8 64 39.1
Medtr3g103120 Medicago truncatula HOM05D000366 ORTHO05D000437 1.7e-06 55.8 63 46.0
PSO017G3777 Papaver somniferum HOM05D000366 ORTHO05D000437 1.7e-06 55.8 62 46.8
VMungo0251G0507 Vigna mungo HOM05D000366 ORTHO05D000437 1.7e-06 55.8 64 42.2
AL8G34880 Arabidopsis lyrata HOM05D000366 ORTHO05D000437 2.2e-06 55.5 65 43.1
AT5G58610 Arabidopsis thaliana HOM05D000366 ORTHO05D000437 2.2e-06 55.5 67 41.8
ECA248G1125 Erigeron canadensis HOM05D000366 ORTHO05D000437 2.2e-06 55.5 63 44.4
Manes.18G046500 Manihot esculenta HOM05D000366 ORTHO05D000437 2.2e-06 55.5 72 38.9
Rhsim13G0068000 Rhododendron simsii HOM05D000366 ORTHO05D000437 2.2e-06 55.5 58 50.0
VMungo1309G0197 Vigna mungo HOM05D000366 ORTHO05D000437 2.2e-06 55.5 65 38.5
PSO478G0388 Papaver somniferum HOM05D000366 ORTHO05D000437 2.8e-06 55.1 63 42.9
ECA232G2156 Erigeron canadensis HOM05D000366 ORTHO05D000437 3.7e-06 54.7 63 42.9
MBI03_g07315_MAGBIO Magnolia biondii HOM05D000366 ORTHO05D000437 3.7e-06 54.7 65 38.5
Hund18838 Selenicereus undatus HOM05D000366 ORTHO05D000437 3.7e-06 54.7 60 48.3
Thhalv10012519m.g Eutrema salsugineum HOM05D000366 ORTHO05D000437 4.8e-06 54.3 65 41.5
BcaB03g13725 Brassica carinata HOM05D000366 ORTHO05D000437 8.2e-06 53.5 27 88.9
Glyma.06G046500 Glycine max HOM05D000366 ORTHO05D000437 8.2e-06 53.5 64 40.6
PSO017G2435 Papaver somniferum HOM05D000366 ORTHO05D000437 8.2e-06 53.5 60 46.7
PSO478G1258 Papaver somniferum HOM05D000366 ORTHO05D000437 8.2e-06 53.5 60 46.7


User provided reference genes

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