Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26567 Brassica carinata HOM05D003723 ORTHO05D004306 0.0e+00 1624.8 798 100.0
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 0.0e+00 1588.9 790 99.0
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 0.0e+00 1576.2 784 99.0
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 0.0e+00 1531.9 792 95.8
BcaC05g26751 Brassica carinata HOM05D003723 ORTHO05D004306 0.0e+00 1515.4 810 92.5
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 0.0e+00 1510.4 789 95.3
Sp1g23720 Schrenkiella parvula HOM05D003723 ORTHO05D004306 0.0e+00 1397.5 812 85.5
Thhalv10006817m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 0.0e+00 1357.8 816 82.7
AL1G40900 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 0.0e+00 1349.0 815 82.8
Carub.0001s2603 Capsella rubella HOM05D003723 ORTHO05D004306 0.0e+00 1340.9 815 82.0
AT1G27470 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 0.0e+00 1335.1 815 82.0
BcaC01g06947 Brassica carinata HOM05D003723 ORTHO05D004306 0.0e+00 1326.6 806 82.4
BcaC01g01603 Brassica carinata HOM05D003723 ORTHO05D004306 0.0e+00 1320.4 806 81.6
C03p74200 Brassica napus HOM05D003723 ORTHO05D004306 0.0e+00 1317.4 807 81.7
A08p26240 Brassica napus HOM05D003723 ORTHO05D004306 0.0e+00 1315.8 807 81.2
BraA08t34575Z Brassica rapa HOM05D003723 ORTHO05D004306 0.0e+00 1308.5 807 81.0
CARHR027080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 0.0e+00 1288.5 814 79.2
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 0.0e+00 1271.5 800 79.6
Thhalv10028433m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 0.0e+00 1183.3 820 72.6
Sp6g10450 Schrenkiella parvula HOM05D003723 ORTHO05D004306 0.0e+00 1177.5 820 72.6
AT4G07410 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 0.0e+00 1173.3 819 71.9
BcaB01g02881 Brassica carinata HOM05D003723 ORTHO05D004306 0.0e+00 1172.1 815 72.6
Aa31sc622G20 Aethionema arabicum HOM05D003723 ORTHO05D004306 0.0e+00 1168.3 823 71.4
AL6G41310 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 0.0e+00 1168.3 817 72.2
Aa31LG7G10210 Aethionema arabicum HOM05D003723 ORTHO05D004306 0.0e+00 1167.5 818 72.2
Carub.0006s2652 Capsella rubella HOM05D003723 ORTHO05D004306 0.0e+00 1162.5 825 71.2
BolC3t15689H Brassica oleracea HOM05D003723 ORTHO05D004306 0.0e+00 1161.4 813 71.7
C03p33700 Brassica napus HOM05D003723 ORTHO05D004306 0.0e+00 1161.0 813 71.7
CARHR287080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 0.0e+00 1160.2 806 72.1
BcaC01g04785 Brassica carinata HOM05D003723 ORTHO05D004306 0.0e+00 1152.9 811 71.5
A03p27910 Brassica napus HOM05D003723 ORTHO05D004306 0.0e+00 1150.6 813 71.2
BraA03t12004Z Brassica rapa HOM05D003723 ORTHO05D004306 0.0e+00 1148.3 813 71.2
THA.LOC104824968 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 0.0e+00 1079.3 831 66.3
THA.LOC104825785 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 3.6e-306 1054.7 821 66.1
Cpa.g.sc142.42 Carica papaya HOM05D003723 ORTHO05D004306 1.1e-305 1053.1 827 63.8
Ciclev10000301m.g Citrus clementina HOM05D003723 ORTHO05D004306 1.7e-295 1019.2 821 62.1
Cfa013762 Carpinus fangiana HOM05D003723 ORTHO05D004306 5.1e-292 1007.7 823 62.6
CiPaw.08G050900 Carya illinoinensis HOM05D003723 ORTHO05D004306 1.2e-290 1003.0 823 62.8
Potri.014G014900 Populus trichocarpa HOM05D003723 ORTHO05D004306 4.0e-289 998.0 823 62.7
Atru.chr13.849 Acer truncatum HOM05D003723 ORTHO05D004306 5.2e-289 997.7 830 61.7
TWI56G1015 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 2.0e-288 995.7 823 61.4
Prupe.1G421300 Prunus persica HOM05D003723 ORTHO05D004306 2.6e-288 995.3 821 63.1
QL93p0154_0009 Quercus lobata HOM05D003723 ORTHO05D004306 7.6e-288 993.8 822 60.9
QL12p038269 Quercus lobata HOM05D003723 ORTHO05D004306 1.7e-287 992.6 822 60.8
Potri.002G117500 Populus trichocarpa HOM05D003723 ORTHO05D004306 4.2e-286 988.0 824 61.0
Dinv44943 Davidia involucrata HOM05D003723 ORTHO05D004306 1.6e-285 986.1 821 61.9
CSS0046104 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 3.5e-285 984.9 823 61.5
Sabra02G0092000 Salix brachista HOM05D003723 ORTHO05D004306 1.0e-284 983.4 837 60.5
Sabra14G0008900 Salix brachista HOM05D003723 ORTHO05D004306 1.3e-284 983.0 825 61.9
Manes.02G183600 Manihot esculenta HOM05D003723 ORTHO05D004306 3.9e-284 981.5 823 60.1
CiPaw.07G173600 Carya illinoinensis HOM05D003723 ORTHO05D004306 1.1e-283 979.9 824 62.0
TAR628G0363 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.9e-283 979.2 818 61.5
Haze_22418 Corylus avellana HOM05D003723 ORTHO05D004306 7.3e-283 977.2 863 59.3
MD15G1067400 Malus domestica HOM05D003723 ORTHO05D004306 7.3e-283 977.2 825 61.8
MD08G1080300 Malus domestica HOM05D003723 ORTHO05D004306 2.4e-281 972.2 826 61.0
Cc10_g05060 Coffea canephora HOM05D003723 ORTHO05D004306 2.4e-278 962.2 820 60.0
Thecc.04G063000 Theobroma cacao HOM05D003723 ORTHO05D004306 2.7e-277 958.7 830 59.6
TWI12G0955 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 2.7e-277 958.7 822 59.1
Lj4A757T32 Lonicera japonica HOM05D003723 ORTHO05D004306 3.5e-277 958.4 826 59.2
Eucgr.F02239 Eucalyptus grandis HOM05D003723 ORTHO05D004306 4.6e-277 958.0 821 59.9
Sed0028163 Sechium edule HOM05D003723 ORTHO05D004306 1.8e-276 956.1 821 59.9
SGA_v2.0_scaffold28G11839 Striga asiatica HOM05D003723 ORTHO05D004306 5.1e-276 954.5 823 59.3
MELO3C016827.2 Cucumis melo HOM05D003723 ORTHO05D004306 2.5e-275 952.2 825 60.2
Nitab4.5_0003725g0010 Nicotiana tabacum HOM05D003723 ORTHO05D004306 4.3e-275 951.4 825 59.0
MSTRG.24381 Avicennia marina HOM05D003723 ORTHO05D004306 1.3e-274 949.9 826 59.2
ClCG05G020690 Citrullus lanatus HOM05D003723 ORTHO05D004306 2.1e-274 949.1 824 59.6
Gohir.D10G114400 Gossypium hirsutum HOM05D003723 ORTHO05D004306 2.1e-274 949.1 832 57.8
CANSAT25G0987 Cannabis sativa HOM05D003723 ORTHO05D004306 3.7e-274 948.3 817 58.6
ECA247G0551 Erigeron canadensis HOM05D003723 ORTHO05D004306 6.2e-274 947.6 812 59.5
Duzib151G0173 Durio zibethinus HOM05D003723 ORTHO05D004306 8.1e-274 947.2 830 58.8
CsaV3_4G035140 Cucumis sativus L. HOM05D003723 ORTHO05D004306 2.4e-273 945.7 821 59.3
Gorai.011G126100 Gossypium raimondii HOM05D003723 ORTHO05D004306 4.0e-273 944.9 831 57.8
Nitab4.5_0000497g0070 Nicotiana tabacum HOM05D003723 ORTHO05D004306 4.0e-273 944.9 824 58.5
PGSC0003DMG400011543 Solanum tuberosum HOM05D003723 ORTHO05D004306 5.8e-272 941.0 824 58.1
DCAR_009874 Daucus carota HOM05D003723 ORTHO05D004306 2.2e-271 939.1 828 58.5
Sopen12g030290 Solanum pennellii HOM05D003723 ORTHO05D004306 2.9e-271 938.7 823 58.4
Nitab4.5_0002314g0030 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.9e-270 936.0 822 58.6
Gohir.A02G089200 Gossypium hirsutum HOM05D003723 ORTHO05D004306 5.5e-270 934.5 828 58.0
HanXRQChr10g0292161 Helianthus annuus HOM05D003723 ORTHO05D004306 9.3e-270 933.7 807 59.7
Solyc12g088290.2 Solanum lycopersicum HOM05D003723 ORTHO05D004306 6.0e-269 931.0 823 57.8
HanXRQChr10g0292141 Helianthus annuus HOM05D003723 ORTHO05D004306 3.9e-268 928.3 807 58.9
Lalb_Chr22g0355711 Lupinus albus HOM05D003723 ORTHO05D004306 7.4e-267 924.1 811 56.7
AUR62022465 Chenopodium quinoa HOM05D003723 ORTHO05D004306 1.3e-266 923.3 832 56.7
PGR031G2627 Punica granatum HOM05D003723 ORTHO05D004306 2.1e-266 922.5 826 57.6
Nitab4.5_0009040g0020 Nicotiana tabacum HOM05D003723 ORTHO05D004306 2.8e-266 922.2 862 56.3
arahy.Tifrunner.gnm1.ann1.82WHW6 Arachis hypogaea HOM05D003723 ORTHO05D004306 3.7e-266 921.8 804 58.0
Peaxi162Scf00160g00521 Petunia axillaris HOM05D003723 ORTHO05D004306 3.7e-266 921.8 799 58.8
Peaxi162Scf00081g02729 Petunia axillaris HOM05D003723 ORTHO05D004306 2.4e-265 919.1 876 54.9
AUR62043254 Chenopodium quinoa HOM05D003723 ORTHO05D004306 1.2e-264 916.8 819 56.5
Lalb_Chr14g0368121 Lupinus albus HOM05D003723 ORTHO05D004306 2.0e-264 916.0 816 56.4
Lj4C72T17 Lonicera japonica HOM05D003723 ORTHO05D004306 3.4e-264 915.2 825 57.0
FvH4_2g32880 Fragaria vesca HOM05D003723 ORTHO05D004306 3.8e-263 911.8 828 57.4
Gohir.D02G112100 Gossypium hirsutum HOM05D003723 ORTHO05D004306 4.9e-263 911.4 828 57.1
FAN24G1723 Fragaria x ananassa HOM05D003723 ORTHO05D004306 5.5e-262 907.9 828 57.1
PGSC0003DMG401010623 Solanum tuberosum HOM05D003723 ORTHO05D004306 1.2e-261 906.7 815 57.3
Gorai.005G127000 Gossypium raimondii HOM05D003723 ORTHO05D004306 1.6e-261 906.4 856 55.5
FAN15G1506 Fragaria x ananassa HOM05D003723 ORTHO05D004306 2.1e-261 906.0 828 56.9
Lj5g0007294 Lotus japonicus HOM05D003723 ORTHO05D004306 2.7e-261 905.6 810 56.8
RcHm_v2.0_Chr6g0309831 Rosa chinensis HOM05D003723 ORTHO05D004306 3.5e-261 905.2 829 56.8
arahy.Tifrunner.gnm1.ann1.YU9IEB Arachis hypogaea HOM05D003723 ORTHO05D004306 1.0e-260 903.7 810 57.0
Aqoxy3G00456 Aquilegia oxysepala HOM05D003723 ORTHO05D004306 1.3e-260 903.3 814 58.4
Manes.18G095200 Manihot esculenta HOM05D003723 ORTHO05D004306 3.0e-260 902.1 717 62.8
EL10Ac1g02364 Beta vulgaris HOM05D003723 ORTHO05D004306 8.7e-260 900.6 826 55.1
Solyc04g077680.3 Solanum lycopersicum HOM05D003723 ORTHO05D004306 8.7e-260 900.6 815 57.1
FAN20G3047 Fragaria x ananassa HOM05D003723 ORTHO05D004306 2.5e-259 899.0 828 56.4
Glyma.14G089042 Glycine max HOM05D003723 ORTHO05D004306 9.7e-259 897.1 820 55.0
Sc02g0007980 Simmondsia chinensis HOM05D003723 ORTHO05D004306 1.6e-258 896.3 822 56.4
Sopen04g031320 Solanum pennellii HOM05D003723 ORTHO05D004306 3.7e-258 895.2 815 56.9
Oeu014279.1 Olea europaea HOM05D003723 ORTHO05D004306 2.6e-256 889.0 756 59.7
PSO541G5768 Papaver somniferum HOM05D003723 ORTHO05D004306 4.5e-256 888.3 810 56.9
vmacro16900 Vaccinium macrocarpon HOM05D003723 ORTHO05D004306 1.3e-255 886.7 813 57.1
SalBow2G1921 Salvia bowleyana HOM05D003723 ORTHO05D004306 2.2e-255 885.9 786 58.3
Glyma.17G233900 Glycine max HOM05D003723 ORTHO05D004306 8.5e-255 884.0 822 55.2
CSS0010741 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 3.2e-254 882.1 703 63.6
VMungo0647G0070 Vigna mungo HOM05D003723 ORTHO05D004306 2.1e-253 879.4 828 55.8
FAN27G2988 Fragaria x ananassa HOM05D003723 ORTHO05D004306 2.3e-252 875.9 828 55.8
Phvul.001G028900 Phaseolus vulgaris HOM05D003723 ORTHO05D004306 3.7e-250 868.6 825 56.5
COL.COLO4_29256 Corchorus olitorius HOM05D003723 ORTHO05D004306 4.8e-250 868.2 824 56.1
Hund05292 Selenicereus undatus HOM05D003723 ORTHO05D004306 4.8e-250 868.2 739 58.7
Hma1.2p1_0210F.1_g089420 Hydrangea macrophylla HOM05D003723 ORTHO05D004306 1.1e-249 867.1 756 59.8
DCAR_012822 Daucus carota HOM05D003723 ORTHO05D004306 1.3e-247 860.1 816 55.1
DCAR_004814 Daucus carota HOM05D003723 ORTHO05D004306 2.2e-247 859.4 860 54.2
PSO017G5808 Papaver somniferum HOM05D003723 ORTHO05D004306 2.9e-247 859.0 818 56.1
SGA_v2.0_scaffold152G36813 Striga asiatica HOM05D003723 ORTHO05D004306 6.7e-244 847.8 824 54.0
GSVIVG01009321001 Vitis vinifera HOM05D003723 ORTHO05D004306 3.3e-243 845.5 813 55.4
Gohir.A10G151900 Gossypium hirsutum HOM05D003723 ORTHO05D004306 1.7e-242 843.2 828 53.7
Ah.05g167030 Amaranthus hybridus HOM05D003723 ORTHO05D004306 6.5e-239 831.2 762 55.5
CDE07G0463 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 1.4e-238 830.1 767 56.8
Sed0011873 Sechium edule HOM05D003723 ORTHO05D004306 1.6e-237 826.6 726 58.3
Psat6g017680 Pisum sativum HOM05D003723 ORTHO05D004306 9.7e-235 817.4 811 53.8
Ca_13209_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 8.2e-234 814.3 809 51.8
Zm00001eb056350 Zea mays HOM05D003723 ORTHO05D004306 5.3e-233 811.6 825 51.2
Os03g0735100 Oryza sativa ssp. japonica HOM05D003723 ORTHO05D004306 1.4e-228 797.0 821 50.8
ATR0739G177 Amborella trichopoda HOM05D003723 ORTHO05D004306 1.8e-228 796.6 829 51.4
TPR.G12983 Trifolium pratense HOM05D003723 ORTHO05D004306 1.2e-227 793.9 817 51.8
unitig_0.g1045 Utricularia gibba HOM05D003723 ORTHO05D004306 5.3e-225 785.0 824 51.0
Zm00001eb215430 Zea mays HOM05D003723 ORTHO05D004306 5.3e-225 785.0 826 50.8
Actinidia10210 Actinidia chinensis HOM05D003723 ORTHO05D004306 8.8e-220 767.7 631 61.3
HPP92_003353 Vanilla planifolia HOM05D003723 ORTHO05D004306 1.1e-217 760.8 696 56.6
TPR.G32238 Trifolium pratense HOM05D003723 ORTHO05D004306 3.3e-214 749.2 827 50.7
Medtr1g017880 Medicago truncatula HOM05D003723 ORTHO05D004306 2.8e-213 746.1 821 49.1
Medtr8g014080 Medicago truncatula HOM05D003723 ORTHO05D004306 5.2e-212 741.9 806 50.5
Lsat_1_v5_gn_1_1120 Lactuca sativa HOM05D003723 ORTHO05D004306 3.5e-176 622.9 582 57.9
Ca_23258_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 5.1e-167 592.4 706 48.0
Mapoly0027s0127 Marchantia polymorpha HOM05D003723 ORTHO05D004306 2.6e-163 580.1 898 38.4
SMO367G0860 Selaginella moellendorffii HOM05D003723 ORTHO05D004306 6.0e-160 568.9 834 38.1
Pp3c22_14490 Physcomitrium patens HOM05D003723 ORTHO05D004306 4.2e-153 546.2 914 37.4
Pp3c19_13580 Physcomitrium patens HOM05D003723 ORTHO05D004306 1.1e-145 521.5 915 36.5
Dinv39214 Davidia involucrata HOM05D003723 ORTHO05D004306 1.2e-139 501.5 425 60.2
CDE04G2329 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 3.3e-134 483.4 406 60.8
CBR_g57871 Chara braunii HOM05D003723 ORTHO05D004306 1.3e-130 471.5 898 34.6
DCAR_032227 Daucus carota HOM05D003723 ORTHO05D004306 4.2e-121 439.9 445 54.2
AagrBONN_evm.TU.Sc2ySwM_344.864 Anthoceros agrestis HOM05D003723 ORTHO05D004306 1.2e-115 421.8 632 38.9
Oeu036976.1 Olea europaea HOM05D003723 ORTHO05D004306 1.0e-111 408.7 322 64.0
SEGI_24646 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 1.0e-103 382.1 508 43.9
Actinidia19301 Actinidia chinensis HOM05D003723 ORTHO05D004306 7.5e-102 375.9 294 65.6
Lsat_1_v5_gn_1_440 Lactuca sativa HOM05D003723 ORTHO05D004306 5.4e-84 316.6 258 62.4
SEGI_10786 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 1.2e-83 315.5 306 51.3
Pp3c18_6690 Physcomitrium patens HOM05D003723 ORTHO05D004306 2.4e-76 291.2 689 32.7
Actinidia19302 Actinidia chinensis HOM05D003723 ORTHO05D004306 1.1e-73 282.3 244 58.2
Lsat_1_v5_gn_0_45940 Lactuca sativa HOM05D003723 ORTHO05D004306 5.1e-66 256.9 216 58.3
MCO10G249 Micromonas commoda HOM05D003723 ORTHO05D004306 9.9e-62 242.7 920 25.1
Dinv39213 Davidia involucrata HOM05D003723 ORTHO05D004306 4.9e-61 240.4 155 74.2
DCAR_032226 Daucus carota HOM05D003723 ORTHO05D004306 2.4e-60 238.0 259 49.4
Oeu053086.3 Olea europaea HOM05D003723 ORTHO05D004306 2.2e-53 214.9 264 50.0
Cre13.g606850 Chlamydomonas reinhardtii HOM05D003723 ORTHO05D004306 2.4e-52 211.5 887 24.6
TAR376G0468 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.1e-47 196.1 119 79.8
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 6.4e-45 186.8 196 50.5
HanXRQChr14g0443971 Helianthus annuus HOM05D003723 ORTHO05D004306 1.1e-44 186.0 205 51.2
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 2.1e-43 181.8 199 49.2
PRCOL_00004412 Prasinoderma coloniale HOM05D003723 ORTHO05D004306 2.5e-41 174.9 456 30.3
CDE04G2756 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 9.0e-39 166.4 187 47.1
TAR376G0365 Trochodendron aralioides HOM05D003723 ORTHO05D004306 4.2e-36 157.5 100 73.0
TAR376G0760 Trochodendron aralioides HOM05D003723 ORTHO05D004306 2.1e-32 145.2 100 66.0
Cfa027112 Carpinus fangiana HOM05D003723 ORTHO05D004306 1.5e-30 139.0 364 29.4
Migut.N02791 Erythranthe guttata HOM05D003723 ORTHO05D004306 5.0e-29 134.0 99 63.6
Psat7g031120 Pisum sativum HOM05D003723 ORTHO05D004306 2.2e-21 108.6 101 56.4
HanXRQChr15g0495401 Helianthus annuus HOM05D003723 ORTHO05D004306 4.3e-17 94.4 84 50.0
CSS0002287 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 2.9e-13 81.6 104 43.3
CSS0021932 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 8.5e-13 80.1 104 43.3
CSS0044410 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 8.5e-13 80.1 104 43.3
CSS0047227 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 2.7e-11 75.1 103 41.7
CSS0041779 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 3.9e-10 71.2 99 39.4
CAN.G400.11 Capsicum annuum HOM05D002670 ORTHO05D000002 1.7e-08 65.9 106 39.6
Potri.009G157900 Populus trichocarpa HOM05D006479 ORTHO05D008310 2.6e-06 58.5 115 34.8


User provided reference genes

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