Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25114 Brassica carinata HOM05D006697 ORTHO05D008161 3.6e-135 485.0 249 100.0
BcaC05g25157 Brassica carinata HOM05D000776 ORTHO05D008161 5.3e-123 444.5 227 100.0
C05p10520 Brassica napus HOM05D000776 ORTHO05D008161 5.3e-123 444.5 227 100.0
BolC5t29798H Brassica oleracea HOM05D000776 ORTHO05D008161 8.5e-121 437.2 231 97.8
A06p08910 Brassica napus HOM05D000776 ORTHO05D008161 5.9e-114 414.5 237 88.6
BraA06t24084Z Brassica rapa HOM05D000776 ORTHO05D008161 7.7e-114 414.1 237 89.0
Sp1g11350 Schrenkiella parvula HOM05D006697 ORTHO05D008161 2.9e-100 369.0 227 85.9
Thhalv10008579m.g Eutrema salsugineum HOM05D006697 ORTHO05D008161 1.4e-99 366.7 227 84.1
CARHR013100 Cardamine hirsuta HOM05D006697 ORTHO05D008161 1.9e-96 356.3 239 79.9
Carub.0001s1251 Capsella rubella HOM05D006697 ORTHO05D008161 7.3e-96 354.4 238 79.0
AL1G24400 Arabidopsis lyrata HOM05D006697 ORTHO05D008161 8.0e-95 350.9 228 82.0
AT1G12790 Arabidopsis thaliana HOM05D006697 ORTHO05D008161 2.0e-93 346.3 228 81.6
Aa31LG2G660 Aethionema arabicum HOM05D006697 ORTHO05D008161 7.5e-85 317.8 244 68.9
THA.LOC104814608 Tarenaya hassleriana HOM05D006697 ORTHO05D008161 9.5e-80 300.8 216 72.7
TWI12G1402 Tripterygium wilfordii HOM05D006697 ORTHO05D008161 7.8e-74 281.2 237 62.4
Thecc.08G178500 Theobroma cacao HOM05D006697 ORTHO05D008161 1.2e-71 273.9 218 61.0
COL.COLO4_05203 Corchorus olitorius HOM05D006697 ORTHO05D008161 2.8e-71 272.7 218 63.3
Potri.001G377100 Populus trichocarpa HOM05D006697 ORTHO05D008161 2.4e-70 269.6 214 65.0
Dinv22109 Davidia involucrata HOM05D006697 ORTHO05D008161 9.0e-70 267.7 227 61.2
Gorai.009G352800 Gossypium raimondii HOM05D006697 ORTHO05D008161 1.2e-69 267.3 218 62.4
Hma1.2p1_0417F.1_g148910 Hydrangea macrophylla HOM05D006697 ORTHO05D008161 1.2e-69 267.3 209 64.1
Gohir.D05G329400 Gossypium hirsutum HOM05D006697 ORTHO05D008161 1.5e-69 266.9 218 62.4
CsaV3_2G033200 Cucumis sativus L. HOM05D006697 ORTHO05D008161 3.4e-69 265.8 201 67.2
Duzib213G0772 Durio zibethinus HOM05D006697 ORTHO05D008161 5.8e-69 265.0 218 61.5
Sabra16G0248400 Salix brachista HOM05D006697 ORTHO05D008161 6.4e-68 261.5 224 61.2
ClCG11G008450 Citrullus lanatus HOM05D006697 ORTHO05D008161 1.1e-67 260.8 201 65.7
Cpa.g.sc21.84 Carica papaya HOM05D006697 ORTHO05D008161 1.9e-67 260.0 204 63.7
Haze_13956 Corylus avellana HOM05D006697 ORTHO05D008161 2.4e-67 259.6 227 61.7
Ca_26167_v3 Cicer arietinum L. HOM05D006697 ORTHO05D008161 3.2e-67 259.2 221 61.5
QL09p001838 Quercus lobata HOM05D006697 ORTHO05D008161 4.2e-67 258.8 237 57.8
Glyma.11G110500 Glycine max HOM05D006697 ORTHO05D008161 5.4e-67 258.5 202 63.9
Sed0014406 Sechium edule HOM05D006697 ORTHO05D008161 2.1e-66 256.5 203 65.5
Actinidia03526 Actinidia chinensis HOM05D006697 ORTHO05D008161 2.7e-66 256.1 226 61.1
QL11p001773 Quercus lobata HOM05D006697 ORTHO05D008161 2.7e-66 256.1 237 57.4
Aqoxy7G01951 Aquilegia oxysepala HOM05D006697 ORTHO05D008161 3.5e-66 255.8 227 59.0
Ciclev10024137m.g Citrus clementina HOM05D006697 ORTHO05D008161 3.5e-66 255.8 198 64.1
VMungo1127G1290 Vigna mungo HOM05D006697 ORTHO05D008161 4.6e-66 255.4 217 60.8
SGA_v2.0_scaffold24G10647 Striga asiatica HOM05D006697 ORTHO05D008161 6.0e-66 255.0 227 57.3
AUR62013379 Chenopodium quinoa HOM05D006697 ORTHO05D008161 1.0e-65 254.2 227 58.1
Lj5C630T5 Lonicera japonica HOM05D006697 ORTHO05D008161 1.0e-65 254.2 201 63.2
Atru.chr13.2506 Acer truncatum HOM05D006697 ORTHO05D008161 1.3e-65 253.8 227 59.0
Ah.05g170350 Amaranthus hybridus HOM05D006697 ORTHO05D008161 1.3e-65 253.8 200 63.0
CANSAT21G1464 Cannabis sativa HOM05D006697 ORTHO05D008161 1.3e-65 253.8 201 62.2
CANSAT21G1945 Cannabis sativa HOM05D006697 ORTHO05D008161 1.3e-65 253.8 201 62.2
AUR62038532 Chenopodium quinoa HOM05D006697 ORTHO05D008161 1.3e-65 253.8 227 58.1
GSVIVG01036291001 Vitis vinifera HOM05D006697 ORTHO05D008161 1.3e-65 253.8 198 64.6
EL10Ac1g01267 Beta vulgaris HOM05D006697 ORTHO05D008161 1.7e-65 253.4 203 61.1
Atru.chr13.2494 Acer truncatum HOM05D006697 ORTHO05D008161 3.9e-65 252.3 227 58.6
Os05g0588200 Oryza sativa ssp. japonica HOM05D006697 ORTHO05D008161 8.7e-65 251.1 227 59.5
PGR044G1078 Punica granatum HOM05D006697 ORTHO05D008161 1.1e-64 250.8 202 63.9
CiPaw.04G009300 Carya illinoinensis HOM05D006697 ORTHO05D008161 1.5e-64 250.4 237 57.0
HanXRQChr08g0227531 Helianthus annuus HOM05D006697 ORTHO05D008161 1.5e-64 250.4 206 58.7
Phvul.011G017400 Phaseolus vulgaris HOM05D006697 ORTHO05D008161 1.5e-64 250.4 217 59.4
Migut.C01379 Erythranthe guttata HOM05D006697 ORTHO05D008161 1.9e-64 250.0 210 58.1
Lj7A235T22 Lonicera japonica HOM05D006697 ORTHO05D008161 1.9e-64 250.0 198 63.1
MBI04_g46123_MAGBIO Magnolia biondii HOM05D006697 ORTHO05D008161 2.5e-64 249.6 209 61.2
arahy.Tifrunner.gnm1.ann1.6HI5DG Arachis hypogaea HOM05D006697 ORTHO05D008161 9.6e-64 247.7 220 57.7
Lj3g0000289 Lotus japonicus HOM05D006697 ORTHO05D008161 9.6e-64 247.7 227 57.7
arahy.Tifrunner.gnm1.ann1.L3LJ1W Arachis hypogaea HOM05D006697 ORTHO05D008161 1.3e-63 247.3 220 57.7
Sc23g0000070 Simmondsia chinensis HOM05D006697 ORTHO05D008161 1.3e-63 247.3 203 60.6
arahy.Tifrunner.gnm1.ann1.D2QDKL Arachis hypogaea HOM05D006697 ORTHO05D008161 1.6e-63 246.9 217 59.0
Peaxi162Scf00818g00536 Petunia axillaris HOM05D006697 ORTHO05D008161 1.6e-63 246.9 205 60.0
TPR.G29429 Trifolium pratense HOM05D006697 ORTHO05D008161 3.6e-63 245.7 211 58.8
PSO170G3180 Papaver somniferum HOM05D006697 ORTHO05D008161 6.2e-63 245.0 228 56.1
FvH4_2g00851 Fragaria vesca HOM05D006697 ORTHO05D008161 1.1e-62 244.2 226 58.0
Psat1g020920 Pisum sativum HOM05D006697 ORTHO05D008161 5.3e-62 241.9 215 56.7
Cc10_g08640 Coffea canephora HOM05D006697 ORTHO05D008161 6.9e-62 241.5 198 61.1
Medtr2g010410 Medicago truncatula HOM05D006697 ORTHO05D008161 9.0e-62 241.1 215 56.7
PGR044G1872 Punica granatum HOM05D006697 ORTHO05D008161 1.5e-61 240.4 202 61.9
RcHm_v2.0_Chr6g0251241 Rosa chinensis HOM05D006697 ORTHO05D008161 2.6e-61 239.6 225 55.6
FAN27G1710 Fragaria x ananassa HOM05D006697 ORTHO05D008161 4.5e-61 238.8 226 56.6
FAN20G2680 Fragaria x ananassa HOM05D006697 ORTHO05D008161 7.6e-61 238.0 215 58.6
HPP92_021529 Vanilla planifolia HOM05D006697 ORTHO05D008161 6.4e-60 235.0 204 58.8
vmacro17835 Vaccinium macrocarpon HOM05D006697 ORTHO05D008161 8.4e-60 234.6 215 58.1
HPP92_021490 Vanilla planifolia HOM05D006697 ORTHO05D008161 2.4e-59 233.0 204 58.3
Glyma.12G014500 Glycine max HOM05D006697 ORTHO05D008161 1.2e-58 230.7 186 60.8
PGSC0003DMG400033140 Solanum tuberosum HOM05D006697 ORTHO05D008161 1.2e-58 230.7 219 52.5
Zm00001eb345090 Zea mays HOM05D006697 ORTHO05D008161 2.1e-58 229.9 226 53.1
Sopen06g023040 Solanum pennellii HOM05D006697 ORTHO05D008161 2.7e-58 229.6 219 53.4
MD05G1004600 Malus domestica HOM05D006697 ORTHO05D008161 4.6e-58 228.8 222 55.0
ECA247G0072 Erigeron canadensis HOM05D006697 ORTHO05D008161 1.3e-57 227.3 198 58.1
Manes.02G201500 Manihot esculenta HOM05D006697 ORTHO05D008161 3.9e-57 225.7 237 54.9
DCAR_016528 Daucus carota HOM05D006697 ORTHO05D008161 6.7e-57 224.9 202 55.4
Solyc06g064560.4 Solanum lycopersicum HOM05D006697 ORTHO05D008161 6.7e-57 224.9 219 53.9
SalBow7G2072 Salvia bowleyana HOM05D006697 ORTHO05D008161 1.1e-56 224.2 268 48.5
Hund16916 Selenicereus undatus HOM05D006697 ORTHO05D008161 4.3e-56 222.2 207 58.0
MD05G1003900 Malus domestica HOM05D006697 ORTHO05D008161 9.6e-56 221.1 191 57.6
vmacro14431 Vaccinium macrocarpon HOM05D006697 ORTHO05D008161 1.3e-55 220.7 239 52.3
CAN.G14.56 Capsicum annuum HOM05D006697 ORTHO05D008161 1.6e-55 220.3 200 56.5
TAR625G0361 Trochodendron aralioides HOM05D006697 ORTHO05D008161 1.6e-55 220.3 201 57.2
Nitab4.5_0002654g0040 Nicotiana tabacum HOM05D006697 ORTHO05D008161 3.4e-53 212.6 223 52.0
Nn8g39331 Nelumbo nucifera HOM05D006697 ORTHO05D008161 6.4e-52 208.4 210 52.9
SGA_v2.0_scaffold147G36299 Striga asiatica HOM05D006697 ORTHO05D008161 7.1e-51 204.9 211 52.1
Nitab4.5_0010319g0040 Nicotiana tabacum HOM05D006697 ORTHO05D008161 7.9e-50 201.4 228 50.0
Prupe.8G007100 Prunus persica HOM05D006697 ORTHO05D008161 7.9e-50 201.4 227 49.8
Lj7C240T16 Lonicera japonica HOM05D006697 ORTHO05D008161 6.7e-49 198.4 199 55.3
Gohir.A05G328400 Gossypium hirsutum HOM05D006697 ORTHO05D008161 2.5e-48 196.4 164 58.5
CSS0025148 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 5.6e-48 195.3 208 55.8
CSS0011722 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 3.7e-47 192.6 235 51.1
AL1G24230 Arabidopsis lyrata HOM05D006697 ORTHO05D008161 6.9e-46 188.3 133 78.9
Lsat_1_v5_gn_1_24901 Lactuca sativa HOM05D006697 ORTHO05D008161 2.0e-45 186.8 163 58.3
Rhsim08G0116200 Rhododendron simsii HOM05D006697 ORTHO05D008161 1.4e-43 180.6 240 45.8
ATR0083G058 Amborella trichopoda HOM05D006697 ORTHO05D008161 3.2e-43 179.5 163 54.0
Lalb_Chr01g0000751 Lupinus albus HOM05D006697 ORTHO05D008161 7.1e-43 178.3 143 61.5
SHI16724 Sapria himalayana HOM05D006697 ORTHO05D008161 9.3e-43 177.9 267 43.8
CAN.G27.3 Capsicum annuum HOM05D006697 ORTHO05D008161 1.2e-42 177.6 177 52.5
Eucgr.F04072 Eucalyptus grandis HOM05D006697 ORTHO05D008161 5.0e-36 155.6 135 60.0
arahy.Tifrunner.gnm1.ann1.9U8FPX Arachis hypogaea HOM05D006697 ORTHO05D008161 3.2e-35 152.9 197 45.7
arahy.Tifrunner.gnm1.ann1.3DZ399 Arachis hypogaea HOM05D006697 ORTHO05D008161 2.7e-34 149.8 217 43.3
MELO3C029791.2 Cucumis melo HOM05D006697 ORTHO05D008161 4.3e-32 142.5 139 58.3
arahy.Tifrunner.gnm1.ann1.GZG3VH Arachis hypogaea HOM05D006697 ORTHO05D008161 8.2e-31 138.3 147 51.0
unitig_32.g11220 Utricularia gibba HOM05D000486 ORTHO05D000375 4.5e-29 132.5 162 46.9
SMO119G0513 Selaginella moellendorffii HOM05D006697 ORTHO05D008161 7.7e-29 131.7 202 37.1
Mapoly0068s0032 Marchantia polymorpha HOM05D006697 ORTHO05D008161 2.1e-26 123.6 223 32.3
MSTRG.1598 Avicennia marina HOM05D006697 ORTHO05D008161 2.2e-23 113.6 100 57.0
unitig_32.g11211 Utricularia gibba HOM05D006697 ORTHO05D008161 4.8e-23 112.5 117 51.3
arahy.Tifrunner.gnm1.ann1.K2UT7U Arachis hypogaea HOM05D006697 ORTHO05D008161 6.3e-23 112.1 99 57.6
RcHm_v2.0_Chr6g0275321 Rosa chinensis HOM05D006697 ORTHO05D008161 1.9e-19 100.5 135 43.7
arahy.Tifrunner.gnm1.ann1.D8HQTE Arachis hypogaea HOM05D006697 ORTHO05D008161 4.1e-14 82.8 66 59.1
Medtr2g451120 Medicago truncatula HOM05D006697 ORTHO05D008161 6.1e-10 68.9 87 46.0
Lalb_Chr01g0000761 Lupinus albus HOM05D006697 ORTHO05D008161 4.0e-09 66.2 68 48.5


User provided reference genes

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