Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g24502 Brassica carinata HOM05D000179 ORTHO05D000107 7.1e-119 430.6 220 100.0
A10p02370 Brassica napus HOM05D000179 ORTHO05D000107 5.6e-108 394.4 220 93.6
BolC5t28996H Brassica oleracea HOM05D000179 ORTHO05D000107 2.0e-105 386.0 203 99.5
C05p02180 Brassica napus HOM05D000179 ORTHO05D000107 2.4e-103 379.0 203 98.0
BcaC05g24500 Brassica carinata HOM05D000179 ORTHO05D000107 1.1e-100 370.2 221 90.5
Sp1g02700 Schrenkiella parvula HOM05D000179 ORTHO05D000107 1.5e-89 333.2 239 77.8
CARHR003170 Cardamine hirsuta HOM05D000179 ORTHO05D000107 5.5e-87 324.7 240 77.9
AT1G03840 Arabidopsis thaliana HOM05D000179 ORTHO05D000107 3.9e-85 318.5 239 76.2
Carub.0001s0296 Capsella rubella HOM05D000179 ORTHO05D000107 5.1e-85 318.2 244 76.2
AL1G13400 Arabidopsis lyrata HOM05D000179 ORTHO05D000107 7.4e-84 314.3 244 76.6
A09p68200 Brassica napus HOM05D000179 ORTHO05D000107 9.6e-84 313.9 234 75.2
BraA09t42155Z Brassica rapa HOM05D000179 ORTHO05D000107 9.6e-84 313.9 234 75.2
BolC8t52790H Brassica oleracea HOM05D000179 ORTHO05D000107 1.2e-81 307.0 231 73.6
C08p52640 Brassica napus HOM05D000179 ORTHO05D000107 1.5e-81 306.6 231 73.2
BcaC05g24503 Brassica carinata HOM05D000179 ORTHO05D000107 1.6e-78 296.6 203 79.8
Thhalv10009734m.g Eutrema salsugineum HOM05D000179 ORTHO05D000107 2.1e-78 296.2 245 71.4
BcaC07g42226 Brassica carinata HOM05D000179 ORTHO05D000107 3.0e-77 292.4 223 72.6
Aa31LG1G9050 Aethionema arabicum HOM05D000179 ORTHO05D000107 9.7e-44 181.0 239 51.9
THA.LOC104826041 Tarenaya hassleriana HOM05D000179 ORTHO05D000107 2.4e-42 176.4 227 52.4
BcaC06g31647 Brassica carinata HOM05D000179 ORTHO05D000107 8.0e-38 161.4 229 47.2
CARHR179110 Cardamine hirsuta HOM05D000179 ORTHO05D000107 4.0e-37 159.1 232 47.4
Carub.0008s0436 Capsella rubella HOM05D000179 ORTHO05D000107 1.8e-34 150.2 232 47.8
AL8G15860 Arabidopsis lyrata HOM05D000179 ORTHO05D000107 1.6e-33 147.1 131 63.4
BcaC06g34586 Brassica carinata HOM05D000179 ORTHO05D000107 6.5e-32 141.7 225 45.8
C07p26850 Brassica napus HOM05D000179 ORTHO05D000107 6.5e-32 141.7 225 45.8
AT5G44160 Arabidopsis thaliana HOM05D000179 ORTHO05D000107 7.2e-31 138.3 132 61.4
Sp2g08990 Schrenkiella parvula HOM05D000179 ORTHO05D000107 2.8e-30 136.3 167 52.7
BraA06t27613Z Brassica rapa HOM05D000179 ORTHO05D000107 1.0e-29 134.4 225 44.0
A06p47430 Brassica napus HOM05D000179 ORTHO05D000107 8.8e-29 131.3 225 43.6
Aa31LG5G3080 Aethionema arabicum HOM05D000179 ORTHO05D000107 3.7e-27 125.9 225 44.0
Thhalv10003218m.g Eutrema salsugineum HOM05D000179 ORTHO05D000107 2.4e-26 123.2 134 59.0
QL08p040636 Quercus lobata HOM05D000179 ORTHO05D000107 3.8e-24 115.9 243 39.9
COL.COLO4_37679 Corchorus olitorius HOM05D000179 ORTHO05D000107 8.6e-24 114.8 242 38.8
Lalb_Chr01g0005051 Lupinus albus HOM05D000179 ORTHO05D000107 2.5e-23 113.2 246 37.4
Thecc.02G187400 Theobroma cacao HOM05D000179 ORTHO05D000107 7.3e-23 111.7 196 42.3
Manes.13G141500 Manihot esculenta HOM05D000179 ORTHO05D000107 2.8e-22 109.8 202 40.6
GSVIVG01020612001 Vitis vinifera HOM05D000179 ORTHO05D000107 3.6e-22 109.4 215 39.5
Dinv04584 Davidia involucrata HOM05D000179 ORTHO05D000107 1.0e-21 107.8 229 39.3
Potri.007G135000 Populus trichocarpa HOM05D000179 ORTHO05D000107 1.8e-21 107.1 200 40.0
Potri.017G017100 Populus trichocarpa HOM05D000179 ORTHO05D000107 1.8e-21 107.1 203 41.9
Lalb_Chr03g0029671 Lupinus albus HOM05D000179 ORTHO05D000107 2.3e-21 106.7 212 38.2
Lalb_Chr19g0135071 Lupinus albus HOM05D000179 ORTHO05D000107 5.2e-21 105.5 249 36.5
Psat0s283g0040 Pisum sativum HOM05D000179 ORTHO05D000107 5.2e-21 105.5 234 37.6
Duzib132G0549 Durio zibethinus HOM05D000179 ORTHO05D000107 1.5e-20 104.0 242 36.4
CSS0027321 Camellia sinensis var. sinensis HOM05D000179 ORTHO05D000107 2.6e-20 103.2 230 36.1
CSS0046960 Camellia sinensis var. sinensis HOM05D000179 ORTHO05D000107 2.6e-20 103.2 223 35.9
Peaxi162Scf00845g00005 Petunia axillaris HOM05D000179 ORTHO05D000107 4.4e-20 102.4 243 35.8
CSS0039438 Camellia sinensis var. sinensis HOM05D000179 ORTHO05D000107 5.7e-20 102.1 196 37.8
Manes.12G086200 Manihot esculenta HOM05D000179 ORTHO05D000107 5.7e-20 102.1 258 36.0
DCAR_013042 Daucus carota HOM05D000179 ORTHO05D000107 1.7e-19 100.5 242 37.2
Ca_18917_v3 Cicer arietinum L. HOM05D000179 ORTHO05D000107 2.2e-19 100.1 194 43.3
MSTRG.15126 Avicennia marina HOM05D000179 ORTHO05D000107 2.9e-19 99.8 220 35.9
Cfa014667 Carpinus fangiana HOM05D000179 ORTHO05D000107 2.9e-19 99.8 227 37.9
BcaC03g16630 Brassica carinata HOM05D000179 ORTHO05D000107 3.7e-19 99.4 159 44.7
C02p44640 Brassica napus HOM05D000179 ORTHO05D000107 3.7e-19 99.4 159 44.7
Cc05_g07790 Coffea canephora HOM05D000179 ORTHO05D000107 3.7e-19 99.4 223 36.3
Gohir.D02G177200 Gossypium hirsutum HOM05D000179 ORTHO05D000107 1.4e-18 97.4 198 41.4
Gorai.005G198900 Gossypium raimondii HOM05D000179 ORTHO05D000107 1.8e-18 97.1 198 40.9
TPR.G14263 Trifolium pratense HOM05D000179 ORTHO05D000107 1.8e-18 97.1 244 36.9
Gohir.A03G154300 Gossypium hirsutum HOM05D000179 ORTHO05D000107 2.4e-18 96.7 198 40.9
Haze_13257 Corylus avellana HOM05D000179 ORTHO05D000107 3.2e-18 96.3 196 39.3
Lj3g0015548 Lotus japonicus HOM05D000179 ORTHO05D000107 3.2e-18 96.3 206 40.3
TAR624G0041 Trochodendron aralioides HOM05D000179 ORTHO05D000107 3.2e-18 96.3 190 40.0
TAR627G0370 Trochodendron aralioides HOM05D000179 ORTHO05D000107 4.1e-18 95.9 236 38.1
Gorai.008G155300 Gossypium raimondii HOM05D000179 ORTHO05D000107 7.0e-18 95.1 240 34.6
Atru.chr6.2924 Acer truncatum HOM05D000179 ORTHO05D000107 9.2e-18 94.7 236 35.6
Gohir.D12G144000 Gossypium hirsutum HOM05D000179 ORTHO05D000107 1.6e-17 94.0 240 34.2
MBI06_g42696_MAGBIO Magnolia biondii HOM05D000179 ORTHO05D000107 1.6e-17 94.0 197 41.1
MBI06_g45915_MAGBIO Magnolia biondii HOM05D000179 ORTHO05D000107 1.6e-17 94.0 197 41.1
Dinv06851 Davidia involucrata HOM05D000179 ORTHO05D000107 2.7e-17 93.2 231 37.7
Gohir.A12G139500 Gossypium hirsutum HOM05D000179 ORTHO05D000107 2.7e-17 93.2 237 34.2
Oeu047869.1 Olea europaea HOM05D000179 ORTHO05D000107 2.7e-17 93.2 192 37.0
vmacro12350 Vaccinium macrocarpon HOM05D000179 ORTHO05D000107 2.7e-17 93.2 224 35.7
arahy.Tifrunner.gnm1.ann1.IGV1QM Arachis hypogaea HOM05D000179 ORTHO05D000107 3.5e-17 92.8 230 35.7
CiPaw.03G182500 Carya illinoinensis HOM05D000179 ORTHO05D000107 3.5e-17 92.8 238 34.0
FAN05G4351 Fragaria x ananassa HOM05D000179 ORTHO05D000107 3.5e-17 92.8 260 33.8
Lj1A708T20 Lonicera japonica HOM05D000179 ORTHO05D000107 3.5e-17 92.8 228 34.2
CiPaw.04G129300 Carya illinoinensis HOM05D000179 ORTHO05D000107 4.6e-17 92.4 198 38.4
FAN09G2011 Fragaria x ananassa HOM05D000179 ORTHO05D000107 7.8e-17 91.7 260 33.5
Lalb_Chr14g0367181 Lupinus albus HOM05D000179 ORTHO05D000107 1.0e-16 91.3 216 35.6
BcaC06g31645 Brassica carinata HOM05D000179 ORTHO05D000107 1.3e-16 90.9 62 72.6
FAN02G0187 Fragaria x ananassa HOM05D000179 ORTHO05D000107 1.7e-16 90.5 260 33.1
FAN14G5733 Fragaria x ananassa HOM05D000179 ORTHO05D000107 1.7e-16 90.5 260 32.7
PGR142G2299 Punica granatum HOM05D000179 ORTHO05D000107 1.7e-16 90.5 159 41.5
FvH4_6g26760 Fragaria vesca HOM05D000179 ORTHO05D000107 2.3e-16 90.1 260 32.3
Sabra17G0013300 Salix brachista HOM05D000179 ORTHO05D000107 3.0e-16 89.7 167 41.9
CAN.G1808.6 Capsicum annuum HOM05D000179 ORTHO05D000107 3.9e-16 89.4 191 37.7
arahy.Tifrunner.gnm1.ann1.6Z1LR7 Arachis hypogaea HOM05D000179 ORTHO05D000107 5.0e-16 89.0 204 39.2
Sopen07g027520 Solanum pennellii HOM05D000179 ORTHO05D000107 5.0e-16 89.0 184 40.8
Actinidia10994 Actinidia chinensis HOM05D000179 ORTHO05D000107 1.1e-15 87.8 128 45.3
arahy.Tifrunner.gnm1.ann1.TQHX8C Arachis hypogaea HOM05D000179 ORTHO05D000107 1.1e-15 87.8 231 34.6
Nn1g06399 Nelumbo nucifera HOM05D000179 ORTHO05D000107 1.5e-15 87.4 203 40.9
RcHm_v2.0_Chr2g0128541 Rosa chinensis HOM05D000179 ORTHO05D000107 1.5e-15 87.4 235 32.8
arahy.Tifrunner.gnm1.ann1.H5QJF0 Arachis hypogaea HOM05D000179 ORTHO05D000107 1.9e-15 87.0 206 37.4
Psat5g274000 Pisum sativum HOM05D000179 ORTHO05D000107 1.9e-15 87.0 219 38.4
Oeu016005.1 Olea europaea HOM05D000179 ORTHO05D000107 3.3e-15 86.3 204 36.3
Cpa.g.c36910 Carica papaya HOM05D000179 ORTHO05D000107 4.3e-15 85.9 214 36.9
TWI59G0817 Tripterygium wilfordii HOM05D000179 ORTHO05D000107 7.3e-15 85.1 243 35.4
Nitab4.5_0022126g0010 Nicotiana tabacum HOM05D000179 ORTHO05D000107 1.2e-14 84.3 181 39.8
Medtr2g090745 Medicago truncatula HOM05D000179 ORTHO05D000107 2.1e-14 83.6 205 38.5
Aqoxy4G00602 Aquilegia oxysepala HOM05D000179 ORTHO05D000107 2.8e-14 83.2 212 34.9
arahy.Tifrunner.gnm1.ann1.16I18L Arachis hypogaea HOM05D000179 ORTHO05D000107 2.8e-14 83.2 204 36.8
Solyc07g053570.4 Solanum lycopersicum HOM05D000179 ORTHO05D000107 3.6e-14 82.8 212 38.2
arahy.Tifrunner.gnm1.ann1.5RS65W Arachis hypogaea HOM05D000179 ORTHO05D000107 8.0e-14 81.6 206 37.4
Ciclev10015043m.g Citrus clementina HOM05D000179 ORTHO05D000107 8.0e-14 81.6 248 33.9
Lj3g0001553 Lotus japonicus HOM05D000179 ORTHO05D000107 8.0e-14 81.6 187 38.5
Migut.M00153 Erythranthe guttata HOM05D000179 ORTHO05D000107 1.8e-13 80.5 228 32.9
Oeu022440.1 Olea europaea HOM05D000179 ORTHO05D000107 1.8e-13 80.5 203 35.5
Phvul.005G099800 Phaseolus vulgaris HOM05D000179 ORTHO05D000107 1.8e-13 80.5 203 38.4
Sc12g0003260 Simmondsia chinensis HOM05D000179 ORTHO05D000107 4.0e-13 79.3 191 35.6
Sed0020343 Sechium edule HOM05D000179 ORTHO05D000107 6.8e-13 78.6 155 41.3
ClCG02G002310 Citrullus lanatus HOM05D000179 ORTHO05D000107 2.0e-12 77.0 156 39.7
SalBow7G0051 Salvia bowleyana HOM05D000179 ORTHO05D000107 2.6e-12 76.6 149 40.3
SalBow7G3562 Salvia bowleyana HOM05D000179 ORTHO05D000107 2.6e-12 76.6 149 40.3
MELO3C018864.2 Cucumis melo HOM05D000179 ORTHO05D000107 9.8e-12 74.7 152 37.5
VMungo1080G0780 Vigna mungo HOM05D000179 ORTHO05D000107 9.8e-12 74.7 235 34.9
Nitab4.5_0005191g0020 Nicotiana tabacum HOM05D000179 ORTHO05D000107 1.3e-11 74.3 135 42.2
RcHm_v2.0_Chr0c19g0500141 Rosa chinensis HOM05D000179 ORTHO05D000107 1.3e-11 74.3 125 40.8
SalBow7G1227 Salvia bowleyana HOM05D000179 ORTHO05D000107 1.3e-11 74.3 213 33.3
CsaV3_7G003130 Cucumis sativus L. HOM05D000179 ORTHO05D000107 1.7e-11 73.9 150 38.7
Glyma.06G287200 Glycine max HOM05D000179 ORTHO05D000107 2.9e-11 73.2 190 35.8
TAR626G1149 Trochodendron aralioides HOM05D000179 ORTHO05D000107 3.7e-11 72.8 160 38.1
Zm00001eb339510 Zea mays HOM05D000179 ORTHO05D000107 3.7e-11 72.8 157 42.7
PSO675G6655 Papaver somniferum HOM05D000179 ORTHO05D000107 6.4e-11 72.0 201 35.8
THA.LOC104814514 Tarenaya hassleriana HOM05D000179 ORTHO05D000107 6.4e-11 72.0 212 31.6
Aqoxy1G02296 Aquilegia oxysepala HOM05D000179 ORTHO05D000107 8.3e-11 71.6 192 33.9
Hund01009 Selenicereus undatus HOM05D000179 ORTHO05D000107 8.3e-11 71.6 206 37.9
Lsat_1_v5_gn_4_66301 Lactuca sativa HOM05D000179 ORTHO05D000107 1.1e-10 71.2 227 31.7
TWI14G1092 Tripterygium wilfordii HOM05D000179 ORTHO05D000107 1.1e-10 71.2 216 35.2
PSO541G2839 Papaver somniferum HOM05D000179 ORTHO05D000107 1.4e-10 70.9 201 35.8
Eucgr.K01062 Eucalyptus grandis HOM05D000179 ORTHO05D000107 3.2e-10 69.7 206 35.0
Os01g0242200 Oryza sativa ssp. japonica HOM05D000179 ORTHO05D000107 7.0e-10 68.6 197 36.0
Glyma.12G207200 Glycine max HOM05D000179 ORTHO05D000107 9.2e-10 68.2 183 36.6
EL10Ac9g20826 Beta vulgaris HOM05D000179 ORTHO05D000107 1.2e-09 67.8 232 31.9
SalBow7G0013 Salvia bowleyana HOM05D000179 ORTHO05D000107 1.2e-09 67.8 151 38.4
Glyma.13G293800 Glycine max HOM05D000179 ORTHO05D000107 2.0e-09 67.0 190 39.5
MELO3C019330.2 Cucumis melo HOM05D000179 ORTHO05D000107 2.7e-09 66.6 160 36.9
HanXRQChr05g0140401 Helianthus annuus HOM05D000179 ORTHO05D000107 2.7e-09 66.6 149 40.3
CsaV3_2G034490 Cucumis sativus L. HOM05D000179 ORTHO05D000107 3.5e-09 66.2 156 37.2
CANSAT64G1274 Cannabis sativa HOM05D000179 ORTHO05D000107 4.6e-09 65.9 188 35.1
Glyma.12G118800 Glycine max HOM05D000179 ORTHO05D000107 6.0e-09 65.5 207 33.8
Phvul.011G123200 Phaseolus vulgaris HOM05D000179 ORTHO05D000107 1.7e-08 63.9 185 36.8
PGSC0003DMG400022141 Solanum tuberosum HOM05D000179 ORTHO05D000107 2.3e-08 63.5 91 40.7
SGA_v2.0_scaffold70G23482 Striga asiatica HOM05D000179 ORTHO05D000107 6.6e-08 62.0 151 35.1
Sed0007050 Sechium edule HOM05D000179 ORTHO05D000107 1.1e-07 61.2 163 35.0
VMungo1127G0441 Vigna mungo HOM05D000179 ORTHO05D000107 1.1e-07 61.2 152 38.2
Atru.chr6.2862 Acer truncatum HOM05D001387 ORTHO05D000107 5.6e-07 58.9 134 40.3
Ca_17939_v3 Cicer arietinum L. HOM05D000179 ORTHO05D000107 7.3e-07 58.5 182 34.1
CANSAT64G1845 Cannabis sativa HOM05D000179 ORTHO05D000107 9.5e-07 58.2 187 34.2
PGSC0003DMG400009382 Solanum tuberosum HOM05D000179 ORTHO05D000107 1.6e-06 57.4 211 32.2
AUR62038988 Chenopodium quinoa HOM05D000179 ORTHO05D000107 6.2e-06 55.5 134 36.6


User provided reference genes

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