Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 8.1e-166 587.0 302 100.0
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 8.1e-150 533.9 278 99.6
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 6.9e-149 530.8 278 98.9
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 3.4e-148 528.5 278 98.6
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 3.8e-147 525.0 278 97.8
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 3.7e-134 481.9 278 88.8
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 4.1e-133 478.4 278 88.1
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 5.3e-133 478.0 278 88.1
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 8.4e-131 470.7 281 86.8
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 4.8e-126 454.9 278 85.3
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 4.8e-126 454.9 278 85.3
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 2.9e-123 445.7 278 80.9
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 6.7e-120 434.5 278 79.1
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 1.1e-119 433.7 278 79.1
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 1.1e-119 433.7 278 79.9
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 4.3e-119 431.8 278 78.4
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 4.3e-119 431.8 278 78.4
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 9.7e-119 430.6 278 77.7
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 1.3e-118 430.3 278 77.0
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 1.7e-118 429.9 280 75.7
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 8.2e-118 427.6 280 75.4
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 1.1e-117 427.2 280 76.1
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 1.4e-117 426.8 280 75.7
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 1.8e-117 426.4 280 75.0
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 1.8e-117 426.4 280 75.7
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 2.4e-117 426.0 280 75.0
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 5.3e-117 424.9 280 75.0
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 1.2e-116 423.7 280 75.0
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 1.2e-116 423.7 280 75.4
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 2.6e-116 422.5 280 75.4
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 3.4e-116 422.2 280 74.6
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 4.5e-116 421.8 280 75.0
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 5.9e-116 421.4 280 74.3
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 7.7e-116 421.0 280 74.6
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 1.3e-115 420.2 280 75.0
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 1.7e-115 419.9 280 75.0
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 2.2e-115 419.5 280 72.9
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 2.2e-115 419.5 280 73.9
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 3.8e-115 418.7 278 76.3
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 3.8e-115 418.7 280 74.3
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 6.5e-115 417.9 280 73.9
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 6.5e-115 417.9 280 72.9
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 1.1e-114 417.2 280 73.2
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 1.4e-114 416.8 278 73.7
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 1.4e-114 416.8 280 73.9
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 1.9e-114 416.4 278 75.9
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 2.5e-114 416.0 280 72.9
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 3.2e-114 415.6 280 73.6
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 3.2e-114 415.6 280 73.6
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 3.2e-114 415.6 278 73.4
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 4.2e-114 415.2 280 75.4
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 4.2e-114 415.2 280 75.4
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 4.2e-114 415.2 280 75.4
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 5.5e-114 414.8 269 77.3
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 5.5e-114 414.8 280 73.2
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 7.2e-114 414.5 280 73.2
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 7.2e-114 414.5 280 73.6
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 9.4e-114 414.1 278 73.7
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 9.4e-114 414.1 278 74.1
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 9.4e-114 414.1 280 72.1
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 1.2e-113 413.7 280 72.9
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 1.2e-113 413.7 278 72.7
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 1.6e-113 413.3 280 72.1
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 2.1e-113 412.9 278 74.5
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 2.1e-113 412.9 280 73.6
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 2.1e-113 412.9 280 73.9
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 2.7e-113 412.5 280 72.5
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 2.7e-113 412.5 280 72.5
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 2.7e-113 412.5 280 72.9
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 4.7e-113 411.8 278 74.8
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 4.7e-113 411.8 280 72.9
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 4.7e-113 411.8 280 70.4
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 6.1e-113 411.4 280 72.1
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 6.1e-113 411.4 280 72.9
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 1.4e-112 410.2 280 71.8
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 1.4e-112 410.2 280 72.9
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.8e-112 409.8 284 72.2
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.8e-112 409.8 284 72.2
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 1.8e-112 409.8 278 73.4
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 1.8e-112 409.8 278 73.4
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 1.8e-112 409.8 280 72.1
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 1.8e-112 409.8 280 72.5
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 2.3e-112 409.5 280 72.5
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 3.0e-112 409.1 285 71.9
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 3.9e-112 408.7 280 75.0
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 5.1e-112 408.3 280 71.8
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 8.8e-112 407.5 280 70.7
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 8.8e-112 407.5 280 73.2
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 2.6e-111 406.0 280 73.9
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 4.4e-111 405.2 280 71.8
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 5.7e-111 404.8 280 71.8
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 7.4e-111 404.4 280 71.8
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 7.4e-111 404.4 280 71.4
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 1.3e-110 403.7 278 73.0
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 1.7e-110 403.3 280 70.7
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 1.1e-109 400.6 280 70.4
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 1.2e-108 397.1 278 70.1
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 4.5e-108 395.2 292 69.9
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 3.8e-107 392.1 273 72.9
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 7.2e-106 387.9 275 70.9
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 1.1e-103 380.6 268 69.8
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 5.7e-103 378.3 260 73.5
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 9.7e-103 377.5 278 66.9
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 4.5e-100 368.6 264 70.1
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 1.9e-98 363.2 278 69.8
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 1.7e-94 350.1 278 64.4
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 3.1e-93 345.9 242 71.5
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 1.7e-91 340.1 235 72.8
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.2e-90 335.9 280 63.2
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 9.4e-90 334.3 275 64.0
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 8.0e-89 331.3 258 67.1
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 3.8e-83 312.4 284 58.1
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 1.9e-82 310.1 286 58.0
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 9.5e-82 307.8 286 57.3
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 2.6e-79 299.7 278 55.0
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 9.8e-79 297.7 280 53.6
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 1.4e-77 293.9 278 54.7
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.2e-73 280.8 282 53.9
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 2.8e-73 279.6 282 54.6
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 1.7e-70 270.4 204 70.1
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.1e-69 267.7 279 51.3
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 2.0e-63 246.9 295 47.5
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 3.4e-63 246.1 279 47.3
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.3e-62 244.2 279 49.1
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 4.7e-57 225.7 286 48.6
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 4.9e-54 215.7 301 40.9
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 9.6e-50 201.4 278 47.5
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.1e-33 147.1 147 53.7
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 2.6e-31 140.2 175 49.1
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 4.9e-30 136.0 181 46.4
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 5.5e-29 132.5 103 63.1
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 1.2e-20 104.8 70 78.6
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 1.9e-18 97.4 76 60.5
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 4.3e-18 96.3 60 71.7
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.1e-16 91.7 77 68.8
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.4e-16 90.5 148 38.5
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 6.5e-14 82.4 47 74.5
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 1.1e-13 81.6 102 46.1
Os05g0388025 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D299932 1.9e-13 80.9 87 46.0
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.7e-12 77.0 57 63.2


User provided reference genes

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