Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23917 Brassica carinata HOM05D005515 ORTHO05D006620 4.7e-37 157.9 118 100.0
BolC9t53269H Brassica oleracea HOM05D005515 ORTHO05D006620 1.7e-34 149.4 114 100.0
A09p03280 Brassica napus HOM05D005515 ORTHO05D006620 7.8e-32 140.6 114 94.7
Sp2g16230 Schrenkiella parvula HOM05D005515 ORTHO05D006620 1.1e-25 120.2 115 87.0
AL5G16230 Arabidopsis lyrata HOM05D005515 ORTHO05D006620 2.4e-25 119.0 115 75.7
Thhalv10005161m.g Eutrema salsugineum HOM05D005515 ORTHO05D006620 2.4e-25 119.0 112 85.7
Carub.0005s0534 Capsella rubella HOM05D005515 ORTHO05D006620 9.3e-25 117.1 115 87.0
AT3G27100 Arabidopsis thaliana HOM05D005515 ORTHO05D006620 6.0e-24 114.4 115 85.2
BraA06t27074Z Brassica rapa HOM05D005515 ORTHO05D006620 1.0e-23 113.6 114 86.0
CARHR148320 Cardamine hirsuta HOM05D005515 ORTHO05D006620 1.3e-23 113.2 114 68.4
Aa31LG2G5500 Aethionema arabicum HOM05D005515 ORTHO05D006620 1.1e-22 110.2 114 82.5
C07p36160 Brassica napus HOM05D005515 ORTHO05D006620 1.5e-22 109.8 105 88.6
THA.LOC104823981 Tarenaya hassleriana HOM05D005515 ORTHO05D006620 3.3e-22 108.6 112 75.0
BolC7t44132H Brassica oleracea HOM05D005515 ORTHO05D006620 2.1e-21 105.9 109 64.2
BraA09t35966Z Brassica rapa HOM05D005515 ORTHO05D006620 1.8e-20 102.8 91 95.6
Peaxi162Scf00881g00228 Petunia axillaris HOM05D005515 ORTHO05D006620 1.5e-19 99.8 118 69.5
Aqoxy7G00951 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 4.5e-19 98.2 116 63.8
Glyma.16G056700 Glycine max HOM05D005515 ORTHO05D006620 1.3e-18 96.7 114 65.8
Lalb_Chr22g0360381 Lupinus albus HOM05D005515 ORTHO05D006620 1.3e-18 96.7 114 66.7
arahy.Tifrunner.gnm1.ann1.W7YL8X Arachis hypogaea HOM05D005515 ORTHO05D006620 1.7e-18 96.3 112 67.0
arahy.Tifrunner.gnm1.ann1.Y4DWZG Arachis hypogaea HOM05D005515 ORTHO05D006620 1.7e-18 96.3 112 67.0
Phvul.001G093800 Phaseolus vulgaris HOM05D005515 ORTHO05D006620 2.2e-18 95.9 114 65.8
Migut.K01462 Erythranthe guttata HOM05D005515 ORTHO05D006620 2.9e-18 95.5 113 61.9
Lj1g0017105 Lotus japonicus HOM05D005515 ORTHO05D006620 2.9e-18 95.5 114 64.0
Sc07g0003980 Simmondsia chinensis HOM05D005515 ORTHO05D006620 2.9e-18 95.5 114 64.0
HPP92_000347 Vanilla planifolia HOM05D005515 ORTHO05D006620 2.9e-18 95.5 116 63.8
Dinv25661 Davidia involucrata HOM05D005515 ORTHO05D006620 3.8e-18 95.1 114 55.3
Hund04339 Selenicereus undatus HOM05D005515 ORTHO05D006620 3.8e-18 95.1 114 63.2
TAR374G0204 Trochodendron aralioides HOM05D005515 ORTHO05D006620 3.8e-18 95.1 115 64.3
Aqoxy2G02223 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 4.9e-18 94.7 116 61.2
Aqoxy5G03385 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 4.9e-18 94.7 112 64.3
CAN.G1300.5 Capsicum annuum HOM05D005515 ORTHO05D006620 4.9e-18 94.7 114 70.2
MSTRG.15568 Avicennia marina HOM05D005515 ORTHO05D006620 6.4e-18 94.4 114 67.5
Nitab4.5_0003376g0030 Nicotiana tabacum HOM05D005515 ORTHO05D006620 8.4e-18 94.0 114 67.5
Nitab4.5_0008640g0020 Nicotiana tabacum HOM05D005515 ORTHO05D006620 8.4e-18 94.0 114 67.5
PSO063G5856 Papaver somniferum HOM05D005515 ORTHO05D006620 8.4e-18 94.0 112 65.2
PSO782G3173 Papaver somniferum HOM05D005515 ORTHO05D006620 8.4e-18 94.0 112 65.2
Glyma.19G091000 Glycine max HOM05D005515 ORTHO05D006620 1.9e-17 92.8 114 61.4
Os01g0920200 Oryza sativa ssp. japonica HOM05D005515 ORTHO05D006620 1.9e-17 92.8 110 60.9
TAR622G0361 Trochodendron aralioides HOM05D005515 ORTHO05D006620 2.4e-17 92.4 112 65.2
Rhsim10G0006500 Rhododendron simsii HOM05D005515 ORTHO05D006620 4.2e-17 91.7 116 59.5
SEGI_35944 Sequoiadendron giganteum HOM05D005515 ORTHO05D006620 4.2e-17 91.7 112 65.2
AUR62017824 Chenopodium quinoa HOM05D005515 ORTHO05D006620 5.4e-17 91.3 114 47.4
A06p41490 Brassica napus HOM05D005515 ORTHO05D006620 7.1e-17 90.9 118 63.6
Eucgr.I01648 Eucalyptus grandis HOM05D005515 ORTHO05D006620 7.1e-17 90.9 110 61.8
Gohir.D04G077100 Gossypium hirsutum HOM05D005515 ORTHO05D006620 7.1e-17 90.9 114 65.8
Ciclev10017250m.g Citrus clementina HOM05D005515 ORTHO05D006620 9.3e-17 90.5 114 64.0
Gorai.012G087000 Gossypium raimondii HOM05D005515 ORTHO05D006620 9.3e-17 90.5 115 64.3
Gohir.A05G338800 Gossypium hirsutum HOM05D005515 ORTHO05D006620 1.2e-16 90.1 114 61.4
ATR1098G146 Amborella trichopoda HOM05D005515 ORTHO05D006620 1.6e-16 89.7 125 60.0
Gohir.D07G235400 Gossypium hirsutum HOM05D005515 ORTHO05D006620 1.6e-16 89.7 116 62.9
Medtr7g033490 Medicago truncatula HOM05D005515 ORTHO05D006620 1.6e-16 89.7 114 50.9
Solyc02g068110.4 Solanum lycopersicum HOM05D005515 ORTHO05D006620 1.6e-16 89.7 114 65.8
CSS0007323 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 2.7e-16 89.0 112 45.5
CiPaw.04G036400 Carya illinoinensis HOM05D005515 ORTHO05D006620 2.7e-16 89.0 112 47.3
Haze_14873 Corylus avellana HOM05D005515 ORTHO05D006620 2.7e-16 89.0 114 51.8
Psat3g175680 Pisum sativum HOM05D005515 ORTHO05D006620 2.7e-16 89.0 114 47.4
TPR.G38294 Trifolium pratense HOM05D005515 ORTHO05D006620 2.7e-16 89.0 114 47.4
MD09G1011100 Malus domestica HOM05D005515 ORTHO05D006620 3.5e-16 88.6 112 55.4
Potri.017G069200 Populus trichocarpa HOM05D005515 ORTHO05D006620 3.5e-16 88.6 115 60.0
Zm00001eb364510 Zea mays HOM05D005515 ORTHO05D006620 3.5e-16 88.6 113 47.8
Cc11_g16850 Coffea canephora HOM05D005515 ORTHO05D006620 4.6e-16 88.2 116 62.9
Atru.chr11.2315 Acer truncatum HOM05D005515 ORTHO05D006620 6.0e-16 87.8 112 62.5
Gohir.A07G228200 Gossypium hirsutum HOM05D005515 ORTHO05D006620 6.0e-16 87.8 116 62.9
Gorai.001G271200 Gossypium raimondii HOM05D005515 ORTHO05D006620 6.0e-16 87.8 116 62.9
Potri.001G330400 Populus trichocarpa HOM05D005515 ORTHO05D006620 7.9e-16 87.4 114 53.5
CANSAT11G1216 Cannabis sativa HOM05D005515 ORTHO05D006620 1.0e-15 87.0 114 55.3
TWI36G0725 Tripterygium wilfordii HOM05D005515 ORTHO05D006620 1.0e-15 87.0 114 61.4
EL10Ac6g15358 Beta vulgaris HOM05D005515 ORTHO05D006620 1.3e-15 86.7 114 44.7
Dinv10962 Davidia involucrata HOM05D000504 ORTHO05D006620 1.3e-15 86.7 114 63.2
Lsat_1_v5_gn_8_147620 Lactuca sativa HOM05D005515 ORTHO05D006620 1.3e-15 86.7 115 62.6
Mapoly0005s0063 Marchantia polymorpha HOM05D005515 ORTHO05D006620 1.3e-15 86.7 112 62.5
Oeu041666.1 Olea europaea HOM05D005515 ORTHO05D006620 1.3e-15 86.7 113 64.6
PGR102G1194 Punica granatum HOM05D005515 ORTHO05D006620 1.8e-15 86.3 112 66.1
Thecc.04G035700 Theobroma cacao HOM05D005515 ORTHO05D006620 1.8e-15 86.3 114 64.0
GSVIVG01033096001 Vitis vinifera HOM05D005515 ORTHO05D006620 1.8e-15 86.3 117 59.0
Duzib264G0697 Durio zibethinus HOM05D005515 ORTHO05D006620 2.3e-15 85.9 116 62.1
FAN09G0415 Fragaria x ananassa HOM05D005515 ORTHO05D006620 2.3e-15 85.9 118 55.1
FAN05G2195 Fragaria x ananassa HOM05D005515 ORTHO05D006620 3.0e-15 85.5 118 55.1
Pp3c12_14240 Physcomitrium patens HOM05D005515 ORTHO05D006620 3.0e-15 85.5 106 60.4
Pp3c4_1860 Physcomitrium patens HOM05D005515 ORTHO05D006620 3.0e-15 85.5 106 63.2
Manes.12G012000 Manihot esculenta HOM05D005515 ORTHO05D006620 3.9e-15 85.1 112 60.7
Atru.chr6.2567 Acer truncatum HOM05D005515 ORTHO05D006620 5.1e-15 84.7 115 62.6
Prupe.3G305900 Prunus persica HOM05D005515 ORTHO05D006620 5.1e-15 84.7 114 60.5
Manes.15G160700 Manihot esculenta HOM05D005515 ORTHO05D006620 1.1e-14 83.6 114 59.6
CsaV3_6G032220 Cucumis sativus L. HOM05D005515 ORTHO05D006620 5.6e-14 81.3 112 55.4
Duzib147G1212 Durio zibethinus HOM05D005515 ORTHO05D006620 9.6e-14 80.5 116 59.5
FvH4_6g53480 Fragaria vesca HOM05D005515 ORTHO05D006620 9.6e-14 80.5 114 50.9
FAN02G1022 Fragaria x ananassa HOM05D005515 ORTHO05D006620 9.6e-14 80.5 114 53.5
Pp3c8_2660 Physcomitrium patens HOM05D005515 ORTHO05D006620 2.1e-13 79.3 110 44.5
BcaB04g19426 Brassica carinata HOM05D005515 ORTHO05D006620 2.8e-13 79.0 82 85.4
Duzib187G1157 Durio zibethinus HOM05D005515 ORTHO05D006620 2.8e-13 79.0 114 59.6
Sed0013471 Sechium edule HOM05D005515 ORTHO05D006620 4.8e-13 78.2 112 41.1
C09p03480 Brassica napus HOM05D005515 ORTHO05D006620 6.2e-13 77.8 40 100.0
Migut.K00729 Erythranthe guttata HOM05D005515 ORTHO05D006620 2.4e-12 75.9 114 38.6
SMO367G0376 Selaginella moellendorffii HOM05D005515 ORTHO05D006620 1.5e-11 73.2 101 58.4
Zm00001eb143260 Zea mays HOM05D005515 ORTHO05D006620 3.4e-11 72.0 110 42.7
unitig_8.g2909 Utricularia gibba HOM05D005515 ORTHO05D006620 4.5e-11 71.6 115 58.3
MSTRG.7999 Avicennia marina HOM05D005515 ORTHO05D006620 9.9e-11 70.5 113 60.2
PGSC0003DMG401006926 Solanum tuberosum HOM05D005515 ORTHO05D006620 4.9e-10 68.2 90 67.8
Actinidia05921 Actinidia chinensis HOM05D005515 ORTHO05D006620 8.4e-10 67.4 113 38.1
Duzib268G1731 Durio zibethinus HOM05D005515 ORTHO05D006620 8.4e-10 67.4 114 39.5
Actinidia36201 Actinidia chinensis HOM05D005515 ORTHO05D006620 4.2e-09 65.1 84 60.7
Haze_12412 Corylus avellana HOM05D000048 ORTHO05D000445 5.5e-09 64.7 112 39.3
Gorai.009G332600 Gossypium raimondii HOM05D005515 ORTHO05D006620 5.5e-09 64.7 116 34.5
MD00G1139400 Malus domestica HOM05D005515 ORTHO05D006620 7.1e-09 64.3 82 45.1
SGA_v2.0_scaffold154G37170 Striga asiatica HOM05D005515 ORTHO05D006620 9.3e-09 63.9 93 64.5
Gohir.A05G310700 Gossypium hirsutum HOM05D005515 ORTHO05D006620 2.7e-08 62.4 84 40.5
Cfa009365 Carpinus fangiana HOM05D000048 ORTHO05D000445 7.9e-08 60.8 110 53.6
MELO3C011459.2 Cucumis melo HOM05D005515 ORTHO05D006620 1.0e-07 60.5 83 54.2
RcHm_v2.0_Chr2g0175521 Rosa chinensis HOM05D005515 ORTHO05D006620 1.8e-07 59.7 40 70.0
VMungo1383G1573 Vigna mungo HOM05D005515 ORTHO05D006620 1.8e-07 59.7 40 72.5
AagrBONN_evm.TU.Sc2ySwM_117.47 Anthoceros agrestis HOM05D005515 ORTHO05D006620 3.0e-07 58.9 84 40.5
QL02p071462 Quercus lobata HOM05D005515 ORTHO05D006620 3.9e-07 58.5 39 69.2
Cpa.g.sc43.50 Carica papaya HOM05D005515 ORTHO05D006620 6.7e-07 57.8 87 63.2
HanXRQChr12g0385431 Helianthus annuus HOM05D005515 ORTHO05D006620 6.7e-07 57.8 40 67.5
Sabra17G0064300 Salix brachista HOM05D005515 ORTHO05D006620 6.7e-07 57.8 108 36.1
Ciclev10033394m.g Citrus clementina HOM05D005515 ORTHO05D006620 1.5e-06 56.6 89 60.7
MCO13G114 Micromonas commoda HOM05D005515 ORTHO05D006620 1.5e-06 56.6 99 58.6
CSS0037273 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 2.5e-06 55.8 38 65.8
CDE02G3365 Ceratophyllum demersum HOM05D005515 ORTHO05D006620 2.5e-06 55.8 85 67.1
Sabra16G0211700 Salix brachista HOM05D005515 ORTHO05D006620 4.3e-06 55.1 40 62.5
SalBow7G1491 Salvia bowleyana HOM05D005515 ORTHO05D006620 5.6e-06 54.7 115 34.8
vmacro05955 Vaccinium macrocarpon HOM05D005515 ORTHO05D006620 7.4e-06 54.3 38 65.8
Nn3g16471 Nelumbo nucifera HOM05D005515 ORTHO05D006620 9.6e-06 53.9 90 60.0


User provided reference genes

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