Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23634 Brassica carinata HOM05D007256 ORTHO05D009109 1.8e-86 322.4 149 100.0
C09p06290 Brassica napus HOM05D007256 ORTHO05D009109 1.8e-86 322.4 149 100.0
A09p05700 Brassica napus HOM05D007256 ORTHO05D009109 1.4e-78 296.2 152 91.4
BolC9t53549H Brassica oleracea HOM05D007256 ORTHO05D009109 9.1e-78 293.5 168 85.1
BcaB04g19715 Brassica carinata HOM05D007256 ORTHO05D009109 2.7e-74 282.0 152 88.8
BraA09t36210Z Brassica rapa HOM05D007256 ORTHO05D009109 3.1e-70 268.5 170 78.2
Thhalv10005088m.g Eutrema salsugineum HOM05D007256 ORTHO05D009109 1.5e-64 249.6 149 77.9
AL6G38610 Arabidopsis lyrata HOM05D007256 ORTHO05D009109 1.7e-60 236.1 151 73.5
AT5G26749 Arabidopsis thaliana HOM05D007256 ORTHO05D009109 1.8e-57 226.1 171 67.8
Sp2g21240 Schrenkiella parvula HOM05D007256 ORTHO05D009109 1.4e-49 199.9 151 67.5
Aa31LG11G9900 Aethionema arabicum HOM05D007256 ORTHO05D009109 1.0e-44 183.7 154 61.0
THA.LOC104821748 Tarenaya hassleriana HOM05D007256 ORTHO05D009109 3.1e-41 172.2 149 58.4
Carub.0006s2440 Capsella rubella HOM05D007256 ORTHO05D009109 8.3e-39 164.1 112 70.5
Manes.08G108700 Manihot esculenta HOM05D007256 ORTHO05D009109 8.6e-36 154.1 158 51.9
ClCG03G017800 Citrullus lanatus HOM05D007256 ORTHO05D009109 1.9e-35 152.9 159 49.7
Ciclev10012993m.g Citrus clementina HOM05D007256 ORTHO05D009109 1.9e-35 152.9 161 50.9
MD12G1202300 Malus domestica HOM05D007256 ORTHO05D009109 3.3e-35 152.1 149 51.0
Prupe.6G307100 Prunus persica HOM05D007256 ORTHO05D009109 3.3e-35 152.1 155 51.0
TWI12G0874 Tripterygium wilfordii HOM05D007256 ORTHO05D009109 5.6e-35 151.4 158 48.7
Potri.013G004801 Populus trichocarpa HOM05D007256 ORTHO05D009109 7.3e-35 151.0 154 50.0
CANSAT54G0501 Cannabis sativa HOM05D007256 ORTHO05D009109 2.8e-34 149.1 156 49.4
QL03p009011 Quercus lobata HOM05D007256 ORTHO05D009109 8.1e-34 147.5 158 47.5
CsaV3_1G037970 Cucumis sativus L. HOM05D007256 ORTHO05D009109 1.1e-33 147.1 161 48.4
Haze_04019 Corylus avellana HOM05D007256 ORTHO05D009109 1.4e-33 146.7 157 48.4
FAN09G0386 Fragaria x ananassa HOM05D007256 ORTHO05D009109 4.0e-33 145.2 152 49.3
QL03p009202 Quercus lobata HOM05D007256 ORTHO05D009109 6.8e-33 144.4 158 46.2
FAN02G0906 Fragaria x ananassa HOM05D007256 ORTHO05D009109 8.9e-33 144.1 152 49.3
GSVIVG01031300001 Vitis vinifera HOM05D007256 ORTHO05D009109 1.2e-32 143.7 154 48.1
Eucgr.B01795 Eucalyptus grandis HOM05D007256 ORTHO05D009109 1.5e-32 143.3 153 49.0
FvH4_6g08160 Fragaria vesca HOM05D007256 ORTHO05D009109 2.0e-32 142.9 149 49.0
Gohir.A13G030200 Gossypium hirsutum HOM05D007256 ORTHO05D009109 2.0e-32 142.9 151 47.0
Sabra13G0003900 Salix brachista HOM05D007256 ORTHO05D009109 2.0e-32 142.9 158 48.7
DCAR_002110 Daucus carota HOM05D007256 ORTHO05D009109 2.6e-32 142.5 152 52.6
Gohir.D13G028200 Gossypium hirsutum HOM05D007256 ORTHO05D009109 3.4e-32 142.1 151 46.4
Gorai.013G032200 Gossypium raimondii HOM05D007256 ORTHO05D009109 3.4e-32 142.1 151 46.4
RcHm_v2.0_Chr3g0458031 Rosa chinensis HOM05D007256 ORTHO05D009109 4.4e-32 141.7 152 48.0
Nn4g25434 Nelumbo nucifera HOM05D007256 ORTHO05D009109 5.8e-32 141.4 150 50.0
Thecc.05G327400 Theobroma cacao HOM05D007256 ORTHO05D009109 5.8e-32 141.4 151 47.0
Peaxi162Scf00357g00431 Petunia axillaris HOM05D007256 ORTHO05D009109 7.6e-32 141.0 151 46.4
Cfa006739 Carpinus fangiana HOM05D007256 ORTHO05D009109 9.9e-32 140.6 151 48.3
Nitab4.5_0002783g0030 Nicotiana tabacum HOM05D007256 ORTHO05D009109 1.7e-31 139.8 151 49.0
ECA238G0534 Erigeron canadensis HOM05D007256 ORTHO05D009109 2.2e-31 139.4 160 47.5
MSTRG.20366 Avicennia marina HOM05D007256 ORTHO05D009109 2.9e-31 139.0 159 45.3
Lsat_1_v5_gn_2_17440 Lactuca sativa HOM05D007256 ORTHO05D009109 6.4e-31 137.9 153 50.3
CiPaw.07G034000 Carya illinoinensis HOM05D007256 ORTHO05D009109 8.4e-31 137.5 151 46.4
Solyc01g100990.3 Solanum lycopersicum HOM05D007256 ORTHO05D009109 3.2e-30 135.6 153 47.1
Atru.chr12.1603 Acer truncatum HOM05D007256 ORTHO05D009109 4.1e-30 135.2 180 43.9
Duzib177G0019 Durio zibethinus HOM05D007256 ORTHO05D009109 5.4e-30 134.8 159 44.7
COL.COLO4_05498 Corchorus olitorius HOM05D007256 ORTHO05D009109 7.1e-30 134.4 153 46.4
HanXRQChr14g0433581 Helianthus annuus HOM05D007256 ORTHO05D009109 7.1e-30 134.4 156 48.7
Cpa.g.sc48.207 Carica papaya HOM05D007256 ORTHO05D009109 9.2e-30 134.0 152 50.7
Nitab4.5_0005710g0050 Nicotiana tabacum HOM05D007256 ORTHO05D009109 9.2e-30 134.0 151 47.0
QL03p009259 Quercus lobata HOM05D007256 ORTHO05D009109 9.2e-30 134.0 158 45.6
Duzib177G1002 Durio zibethinus HOM05D007256 ORTHO05D009109 2.1e-29 132.9 152 45.4
Cc02_g35540 Coffea canephora HOM05D007256 ORTHO05D009109 2.7e-29 132.5 162 46.3
Zm00001eb333750 Zea mays HOM05D007256 ORTHO05D009109 2.7e-29 132.5 167 43.7
FAN14G3866 Fragaria x ananassa HOM05D007256 ORTHO05D009109 3.5e-29 132.1 153 45.1
Sopen01g044450 Solanum pennellii HOM05D007256 ORTHO05D009109 3.5e-29 132.1 153 46.4
Migut.B00859 Erythranthe guttata HOM05D007256 ORTHO05D009109 7.8e-29 131.0 156 46.2
SGA_v2.0_scaffold438G51636 Striga asiatica HOM05D007256 ORTHO05D009109 7.8e-29 131.0 155 43.2
CAN.G1374.8 Capsicum annuum HOM05D007256 ORTHO05D009109 1.0e-28 130.6 151 47.0
Oeu060662.1 Olea europaea HOM05D007256 ORTHO05D009109 1.3e-28 130.2 168 42.9
Sed0013353 Sechium edule HOM05D007256 ORTHO05D009109 1.3e-28 130.2 152 45.4
TAR362G0938 Trochodendron aralioides HOM05D007256 ORTHO05D009109 1.7e-28 129.8 154 47.4
MELO3C015247.2 Cucumis melo HOM05D000487 ORTHO05D000405 2.3e-28 129.4 155 46.5
PGSC0003DMG400002748 Solanum tuberosum HOM05D007256 ORTHO05D009109 2.3e-28 129.4 151 47.7
Os01g0252200 Oryza sativa ssp. japonica HOM05D007256 ORTHO05D009109 1.5e-27 126.7 173 43.4
AUR62006795 Chenopodium quinoa HOM05D007256 ORTHO05D009109 1.9e-27 126.3 153 45.1
Hma1.2p1_0052F.1_g030520 Hydrangea macrophylla HOM05D007256 ORTHO05D009109 4.3e-27 125.2 158 43.7
Aqoxy2G02591 Aquilegia oxysepala HOM05D007256 ORTHO05D009109 7.3e-27 124.4 149 46.3
PSO210G0513 Papaver somniferum HOM05D007256 ORTHO05D009109 3.6e-26 122.1 156 42.9
EL10Ac4g09530 Beta vulgaris HOM05D007256 ORTHO05D009109 6.2e-26 121.3 155 42.6
Gorai.001G184000 Gossypium raimondii HOM05D007256 ORTHO05D009109 1.4e-25 120.2 149 43.6
SalBow7G1589 Salvia bowleyana HOM05D007256 ORTHO05D009109 1.4e-25 120.2 178 39.9
VMungo0720G0365 Vigna mungo HOM05D007256 ORTHO05D009109 2.4e-25 119.4 149 43.0
PSO761G0366 Papaver somniferum HOM05D007256 ORTHO05D009109 4.0e-25 118.6 166 41.6
Phvul.007G203900 Phaseolus vulgaris HOM05D007256 ORTHO05D009109 5.2e-25 118.2 149 43.0
arahy.Tifrunner.gnm1.ann1.H7RZSB Arachis hypogaea HOM05D007256 ORTHO05D009109 1.2e-24 117.1 156 41.0
arahy.Tifrunner.gnm1.ann1.Q851GZ Arachis hypogaea HOM05D007256 ORTHO05D009109 1.2e-24 117.1 156 41.0
Lalb_Chr02g0147641 Lupinus albus HOM05D007256 ORTHO05D009109 7.6e-24 114.4 149 43.0
CDE08G0276 Ceratophyllum demersum HOM05D007256 ORTHO05D009109 4.9e-23 111.7 149 43.6
Lj5g0000046 Lotus japonicus HOM05D007256 ORTHO05D009109 6.4e-23 111.3 155 38.7
SEGI_23053 Sequoiadendron giganteum HOM05D007256 ORTHO05D009109 1.1e-22 110.5 159 37.7
Glyma.10G144700 Glycine max HOM05D007256 ORTHO05D009109 1.4e-22 110.2 149 41.6
Hund07289 Selenicereus undatus HOM05D007256 ORTHO05D009109 2.4e-22 109.4 236 33.9
unitig_699.g19800 Utricularia gibba HOM05D007256 ORTHO05D009109 2.4e-22 109.4 186 38.2
Ca_10190_v3 Cicer arietinum L. HOM05D007256 ORTHO05D009109 3.2e-22 109.0 150 41.3
TPR.G2616 Trifolium pratense HOM05D007256 ORTHO05D009109 4.2e-22 108.6 147 39.5
Pp3c18_1910 Physcomitrium patens HOM05D007256 ORTHO05D009109 6.0e-21 104.8 149 38.9
Sc09g0002500 Simmondsia chinensis HOM05D007256 ORTHO05D009109 1.1e-19 100.5 81 54.3
Psat1g134200 Pisum sativum HOM05D007256 ORTHO05D009109 1.5e-19 100.1 146 37.0
HPP92_001218 Vanilla planifolia HOM05D007256 ORTHO05D009109 1.9e-19 99.8 153 39.2
Medtr1g084750 Medicago truncatula HOM05D007256 ORTHO05D009109 3.3e-19 99.0 150 37.3
ATR0693G354 Amborella trichopoda HOM05D007256 ORTHO05D009109 7.3e-19 97.8 116 44.8
TPR.G2644 Trifolium pratense HOM05D007256 ORTHO05D009109 1.4e-17 93.6 155 37.4
Mapoly0054s0011 Marchantia polymorpha HOM05D007256 ORTHO05D009109 9.0e-17 90.9 151 35.8
CARHR186830 Cardamine hirsuta HOM05D007256 ORTHO05D009109 1.5e-16 90.1 41 95.1
FAN05G3272 Fragaria x ananassa HOM05D000487 ORTHO05D000405 3.4e-16 89.0 103 46.6
Gohir.D01G139700 Gossypium hirsutum HOM05D007256 ORTHO05D009109 5.8e-16 88.2 121 39.7
PGR042G2181 Punica granatum HOM05D007256 ORTHO05D009109 9.9e-16 87.4 96 42.7
SHI06526 Sapria himalayana HOM05D007256 ORTHO05D009109 1.1e-11 73.9 51 60.8
Rhsim05G0121300 Rhododendron simsii HOM05D007256 ORTHO05D009109 2.5e-11 72.8 69 52.2
Ah.10g027130 Amaranthus hybridus HOM05D007256 ORTHO05D009109 3.3e-11 72.4 69 50.7
vmacro19770 Vaccinium macrocarpon HOM05D007256 ORTHO05D009109 3.3e-11 72.4 221 29.4
HPP92_001189 Vanilla planifolia HOM05D007256 ORTHO05D009109 2.8e-10 69.3 45 66.7
Aqoxy4G00797 Aquilegia oxysepala HOM05D007256 ORTHO05D009109 9.0e-09 64.3 149 32.2


User provided reference genes

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