Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23462 Brassica carinata HOM05D004839 ORTHO05D006012 4.3e-262 907.9 629 100.0
C09p08080 Brassica napus HOM05D004839 ORTHO05D006012 3.1e-260 901.7 629 98.9
BolC9t53722H Brassica oleracea HOM05D004839 ORTHO05D006012 3.8e-258 894.8 636 97.3
A09p07230 Brassica napus HOM05D004839 ORTHO05D006012 3.1e-252 875.2 629 94.6
BraA09t36373Z Brassica rapa HOM05D004839 ORTHO05D006012 5.5e-217 758.1 519 91.3
C02p61390 Brassica napus HOM05D004839 ORTHO05D006012 1.7e-210 736.5 637 82.6
Sp2g24400 Schrenkiella parvula HOM05D004839 ORTHO05D006012 2.2e-210 736.1 640 82.3
BolC2t12188H Brassica oleracea HOM05D004839 ORTHO05D006012 1.5e-206 723.4 635 82.0
A02p41460 Brassica napus HOM05D004839 ORTHO05D006012 1.8e-196 689.9 638 79.2
Carub.0008s2182 Capsella rubella HOM05D004839 ORTHO05D006012 7.8e-195 684.5 512 82.6
Thhalv10003808m.g Eutrema salsugineum HOM05D004839 ORTHO05D006012 1.5e-193 680.2 653 77.5
AT5G61150 Arabidopsis thaliana HOM05D004839 ORTHO05D006012 2.1e-192 676.4 636 77.4
CARHR274840 Cardamine hirsuta HOM05D004839 ORTHO05D006012 1.2e-187 660.6 641 76.9
THA.LOC104818342 Tarenaya hassleriana HOM05D004839 ORTHO05D006012 2.0e-182 643.3 637 71.9
Aa31LG11G2200 Aethionema arabicum HOM05D004839 ORTHO05D006012 1.7e-181 640.2 658 75.4
AL8G37800 Arabidopsis lyrata HOM05D004839 ORTHO05D006012 1.7e-173 613.6 630 73.7
Ciclev10019267m.g Citrus clementina HOM05D004839 ORTHO05D006012 7.4e-145 518.5 647 59.0
Duzib205G0813 Durio zibethinus HOM05D004839 ORTHO05D006012 4.5e-142 509.2 640 62.0
Gorai.008G198100 Gossypium raimondii HOM05D004839 ORTHO05D006012 4.5e-142 509.2 643 62.4
PGR044G2204 Punica granatum HOM05D004839 ORTHO05D006012 9.9e-142 508.1 649 56.4
Atru.chr9.403 Acer truncatum HOM05D004839 ORTHO05D006012 1.7e-141 507.3 640 60.3
Gohir.D12G184700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.7e-141 507.3 643 62.2
Haze_07703 Corylus avellana HOM05D004839 ORTHO05D006012 3.8e-141 506.1 637 62.2
Gohir.A12G181900 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.9e-140 503.8 643 62.2
Manes.14G084900 Manihot esculenta HOM05D004839 ORTHO05D006012 3.5e-139 499.6 635 57.5
Dinv10521 Davidia involucrata HOM05D004839 ORTHO05D006012 3.7e-136 489.6 539 61.4
QL10p019188 Quercus lobata HOM05D004839 ORTHO05D006012 1.4e-135 487.6 640 59.1
Dinv17400 Davidia involucrata HOM05D004839 ORTHO05D006012 5.3e-135 485.7 642 57.9
Eucgr.K02520 Eucalyptus grandis HOM05D004839 ORTHO05D006012 9.0e-135 485.0 642 56.4
TWI81G0494 Tripterygium wilfordii HOM05D004839 ORTHO05D006012 1.5e-129 467.6 638 55.5
Manes.06G085750 Manihot esculenta HOM05D004839 ORTHO05D006012 2.5e-129 466.8 692 52.3
CiPaw.11G051800 Carya illinoinensis HOM05D004839 ORTHO05D006012 7.4e-129 465.3 640 59.2
Cc04_g13220 Coffea canephora HOM05D004839 ORTHO05D006012 9.7e-129 464.9 647 58.1
Actinidia25779 Actinidia chinensis HOM05D004839 ORTHO05D006012 1.6e-128 464.2 643 60.0
Sabra12G0046900 Salix brachista HOM05D004839 ORTHO05D006012 1.4e-127 461.1 635 54.5
TAR622G0763 Trochodendron aralioides HOM05D004839 ORTHO05D006012 6.9e-127 458.8 642 57.6
Prupe.5G203800 Prunus persica HOM05D004839 ORTHO05D006012 2.6e-126 456.8 514 61.1
TAR374G0643 Trochodendron aralioides HOM05D004839 ORTHO05D006012 4.5e-126 456.1 641 55.4
Nn4g23407 Nelumbo nucifera HOM05D004839 ORTHO05D006012 9.3e-124 448.4 640 58.3
Aqoxy3G03618 Aquilegia oxysepala HOM05D004839 ORTHO05D006012 2.3e-122 443.7 536 58.8
Thecc.03G099900 Theobroma cacao HOM05D004839 ORTHO05D006012 2.3e-122 443.7 505 58.6
CSS0002450 Camellia sinensis var. sinensis HOM05D004839 ORTHO05D006012 5.1e-122 442.6 643 57.7
Potri.012G065600 Populus trichocarpa HOM05D004839 ORTHO05D006012 1.1e-121 441.4 515 58.4
Sc04g0004870 Simmondsia chinensis HOM05D004839 ORTHO05D006012 1.5e-121 441.0 640 49.8
ECA246G0121 Erigeron canadensis HOM05D004839 ORTHO05D006012 3.3e-121 439.9 530 52.6
Lsat_1_v5_gn_1_13541 Lactuca sativa HOM05D004839 ORTHO05D006012 9.7e-121 438.3 537 53.3
Glyma.04G163400 Glycine max HOM05D004839 ORTHO05D006012 2.8e-120 436.8 520 60.0
Migut.D01694 Erythranthe guttata HOM05D004839 ORTHO05D006012 8.2e-120 435.3 645 53.3
Lsat_1_v5_gn_5_23161 Lactuca sativa HOM05D004839 ORTHO05D006012 3.1e-119 433.3 652 50.2
MBI16_g41829_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 4.1e-119 433.0 654 53.5
MD14G1210500 Malus domestica HOM05D004839 ORTHO05D006012 5.3e-119 432.6 514 56.8
FvH4_5g14030 Fragaria vesca HOM05D004839 ORTHO05D006012 4.5e-118 429.5 638 51.9
SalBow5G5272 Salvia bowleyana HOM05D004839 ORTHO05D006012 7.7e-118 428.7 649 52.5
Nitab4.5_0001410g0060 Nicotiana tabacum HOM05D004839 ORTHO05D006012 2.2e-117 427.2 662 56.2
GSVIVG01007883001 Vitis vinifera HOM05D004839 ORTHO05D006012 2.2e-117 427.2 514 62.8
EL10Ac5g11115 Beta vulgaris HOM05D004839 ORTHO05D006012 3.8e-117 426.4 656 49.5
arahy.Tifrunner.gnm1.ann1.PN7U9Z Arachis hypogaea HOM05D004839 ORTHO05D006012 5.0e-117 426.0 662 57.3
FAN08G2012 Fragaria x ananassa HOM05D004839 ORTHO05D006012 1.1e-116 424.9 639 51.8
MD06G1201400 Malus domestica HOM05D004839 ORTHO05D006012 1.1e-116 424.9 414 59.7
Lj1g0002650 Lotus japonicus HOM05D004839 ORTHO05D006012 1.4e-116 424.5 520 56.5
AUR62008513 Chenopodium quinoa HOM05D004839 ORTHO05D006012 3.2e-116 423.3 563 49.6
arahy.Tifrunner.gnm1.ann1.8FG0EB Arachis hypogaea HOM05D004839 ORTHO05D006012 1.6e-115 421.0 522 59.8
Oeu001010.1 Olea europaea HOM05D004839 ORTHO05D006012 2.1e-115 420.6 418 59.3
HanXRQChr05g0157271 Helianthus annuus HOM05D004839 ORTHO05D006012 2.7e-115 420.2 540 55.0
Lj5A104T41 Lonicera japonica HOM05D004839 ORTHO05D006012 2.7e-115 420.2 638 49.7
MSTRG.11357 Avicennia marina HOM05D004839 ORTHO05D006012 6.1e-115 419.1 640 52.2
Glyma.06G202100 Glycine max HOM05D004839 ORTHO05D006012 2.3e-114 417.2 415 58.1
RcHm_v2.0_Chr7g0182791 Rosa chinensis HOM05D004839 ORTHO05D006012 8.8e-114 415.2 638 58.0
Actinidia04835 Actinidia chinensis HOM05D004839 ORTHO05D006012 9.7e-113 411.8 397 60.5
AUR62021577 Chenopodium quinoa HOM05D004839 ORTHO05D006012 9.7e-113 411.8 519 52.2
TPR.G11937 Trifolium pratense HOM05D004839 ORTHO05D006012 1.7e-112 411.0 519 56.8
MSTRG.22981 Avicennia marina HOM05D004839 ORTHO05D006012 2.2e-112 410.6 637 55.7
Sopen03g034280 Solanum pennellii HOM05D004839 ORTHO05D006012 2.8e-112 410.2 518 57.9
VMungo1309G1059 Vigna mungo HOM05D004839 ORTHO05D006012 6.3e-112 409.1 419 59.2
Sed0023482 Sechium edule HOM05D004839 ORTHO05D006012 1.8e-111 407.5 432 60.2
Lalb_Chr13g0296121 Lupinus albus HOM05D004839 ORTHO05D006012 2.4e-111 407.1 413 58.4
Phvul.009G192800 Phaseolus vulgaris HOM05D004839 ORTHO05D006012 2.4e-111 407.1 419 59.4
MELO3C002019.2 Cucumis melo HOM05D004839 ORTHO05D006012 4.1e-111 406.4 520 56.2
ClCG04G011890 Citrullus lanatus HOM05D004839 ORTHO05D006012 5.3e-111 406.0 520 53.7
Nitab4.5_0001485g0220 Nicotiana tabacum HOM05D004839 ORTHO05D006012 6.9e-111 405.6 563 55.8
Solyc03g115240.4 Solanum lycopersicum HOM05D004839 ORTHO05D006012 9.1e-111 405.2 642 56.5
Sed0026784 Sechium edule HOM05D004839 ORTHO05D006012 5.9e-110 402.5 508 55.1
Ah.11g047930 Amaranthus hybridus HOM05D004839 ORTHO05D006012 1.4e-108 397.9 644 47.4
CAN.G479.17 Capsicum annuum HOM05D004839 ORTHO05D006012 4.2e-108 396.4 673 54.1
Peaxi162Scf00201g10021 Petunia axillaris HOM05D004839 ORTHO05D006012 4.2e-108 396.4 412 57.3
CDE04G3432 Ceratophyllum demersum HOM05D004839 ORTHO05D006012 7.2e-108 395.6 666 47.3
Hund02595 Selenicereus undatus HOM05D004839 ORTHO05D006012 1.6e-107 394.4 692 50.4
Ca_02963_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 2.1e-107 394.0 485 60.8
Psat0s569g0080 Pisum sativum HOM05D004839 ORTHO05D006012 6.1e-107 392.5 532 53.2
DCAR_023142 Daucus carota HOM05D004839 ORTHO05D006012 8.0e-107 392.1 558 49.5
CsaV3_1G005900 Cucumis sativus L. HOM05D000422 ORTHO05D003570 2.3e-106 390.6 512 53.9
Medtr3g024380 Medicago truncatula HOM05D004839 ORTHO05D006012 6.7e-106 389.0 517 58.4
FAN13G1538 Fragaria x ananassa HOM05D004839 ORTHO05D006012 8.8e-106 388.7 637 45.1
Lalb_Chr07g0184911 Lupinus albus HOM05D004839 ORTHO05D006012 2.0e-105 387.5 655 50.2
Medtr3g024360 Medicago truncatula HOM05D004839 ORTHO05D006012 5.7e-105 386.0 517 59.4
HPP92_018601 Vanilla planifolia HOM05D004839 ORTHO05D006012 3.7e-104 383.3 562 47.9
unitig_749.g13436 Utricularia gibba HOM05D004839 ORTHO05D006012 5.3e-103 379.4 539 46.9
SGA_v2.0_scaffold114G31924 Striga asiatica HOM05D004839 ORTHO05D006012 1.7e-101 374.4 679 43.3
PSO478G1197 Papaver somniferum HOM05D004839 ORTHO05D006012 1.9e-100 370.9 550 52.2
PSO017G5800 Papaver somniferum HOM05D004839 ORTHO05D006012 2.5e-100 370.5 553 51.5
ATR0064G044 Amborella trichopoda HOM05D004839 ORTHO05D006012 1.4e-98 364.8 361 57.9
Zm00001eb298660 Zea mays HOM05D004839 ORTHO05D006012 2.7e-94 350.5 567 47.4
Os12g0579000 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 7.2e-92 342.4 464 48.9
GSVIVG01007906001 Vitis vinifera HOM05D004839 ORTHO05D006012 1.2e-89 335.1 370 61.1
SEGI_03099 Sequoiadendron giganteum HOM05D004839 ORTHO05D006012 1.5e-89 334.7 540 50.9
COL.COLO4_37593 Corchorus olitorius HOM05D004839 ORTHO05D006012 6.3e-88 329.3 631 39.9
Lalb_Chr07g0184901 Lupinus albus HOM05D004839 ORTHO05D006012 8.3e-88 328.9 388 52.6
vmacro16504 Vaccinium macrocarpon HOM05D004839 ORTHO05D006012 2.4e-87 327.4 581 42.7
Zm00001eb118140 Zea mays HOM05D004839 ORTHO05D006012 5.4e-87 326.2 580 45.2
Gohir.D13G091100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 2.8e-80 303.9 376 58.0
Gohir.D07G141700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 6.3e-80 302.8 376 57.4
Gohir.D12G082100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 6.3e-80 302.8 376 57.7
Gohir.D12G082302 Gossypium hirsutum HOM05D004839 ORTHO05D006012 6.3e-80 302.8 376 57.4
Pp3c14_2440 Physcomitrium patens HOM05D004839 ORTHO05D006012 2.9e-77 293.9 373 49.9
Mapoly0001s0516 Marchantia polymorpha HOM05D004839 ORTHO05D006012 2.3e-74 284.3 342 50.0
AagrBONN_evm.TU.Sc2ySwM_228.780 Anthoceros agrestis HOM05D004839 ORTHO05D006012 6.4e-72 276.2 320 51.6
Os03g0756500 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 1.2e-70 271.9 345 48.1
Os07g0109600 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 2.0e-70 271.2 478 45.0
Nn030s41597 Nelumbo nucifera HOM05D004839 ORTHO05D006012 2.3e-66 257.7 313 61.0
SMO301G0010 Selaginella moellendorffii HOM05D004839 ORTHO05D006012 3.5e-62 243.8 390 43.8
MBI05_g39010_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 1.2e-57 228.8 418 42.1
SGA_v2.0_scaffold313G48307 Striga asiatica HOM05D004839 ORTHO05D006012 2.4e-55 221.1 314 45.5
MSTRG.22984 Avicennia marina HOM05D004839 ORTHO05D006012 7.8e-54 216.1 276 47.5
Migut.I00327 Erythranthe guttata HOM05D004839 ORTHO05D006012 8.1e-51 206.1 395 38.7
CBR_g54910 Chara braunii HOM05D004839 ORTHO05D000002 3.5e-46 190.7 325 42.8
Oeu001821.1 Olea europaea HOM05D004839 ORTHO05D006012 1.1e-42 179.1 246 46.3
MD06G1201100 Malus domestica HOM05D004839 ORTHO05D006012 2.0e-33 148.3 134 64.2
arahy.Tifrunner.gnm1.ann1.YGY8HB Arachis hypogaea HOM05D010000 ORTHO05D006012 2.4e-31 141.4 169 52.1
RhsimUnG0229200 Rhododendron simsii HOM05D004839 ORTHO05D006012 2.3e-29 134.8 276 48.6
Lsat_1_v5_gn_3_57821 Lactuca sativa HOM05D004839 ORTHO05D006012 6.7e-29 133.3 103 68.0
MBI05_g05675_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 6.9e-26 123.2 455 31.2
Oeu008253.1 Olea europaea HOM05D004839 ORTHO05D006012 9.0e-26 122.9 190 45.3
Gohir.D01G045700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.1e-23 115.9 338 38.5
MCO04G392 Micromonas commoda HOM05D004839 ORTHO05D006012 7.9e-22 109.8 377 29.2
SalBow5G1942 Salvia bowleyana HOM05D004839 ORTHO05D006012 8.7e-21 106.3 253 37.5
Oeu022173.1 Olea europaea HOM05D004839 ORTHO05D006012 1.4e-18 99.0 287 31.4
Cre16.g694204 Chlamydomonas reinhardtii HOM05D004839 ORTHO05D006012 1.7e-16 92.0 333 28.8
Cpa.g.c41089 Carica papaya HOM05D004839 ORTHO05D006012 1.1e-15 89.4 96 51.0
arahy.Tifrunner.gnm1.ann1.WE96GU Arachis hypogaea HOM05D004839 ORTHO05D006012 3.3e-12 77.8 148 47.3
MD06G1201000 Malus domestica HOM05D004839 ORTHO05D006012 4.3e-12 77.4 60 71.7
Peaxi162Scf00201g00231 Petunia axillaris HOM05D004839 ORTHO05D006012 2.4e-10 71.6 53 64.2
Cpa.g.c34487 Carica papaya HOM05D004839 ORTHO05D006012 3.1e-10 71.2 148 59.5
FAN18G1977 Fragaria x ananassa HOM05D004839 ORTHO05D006012 4.6e-06 57.4 47 70.2


User provided reference genes

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