Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23125 Brassica carinata HOM05D036850 ORTHO05D032267 9.9e-59 229.9 119 100.0
AL8G45240 Arabidopsis lyrata HOM05D003367 ORTHO05D004284 5.9e-11 71.2 96 58.3
CARHR281430 Cardamine hirsuta HOM05D003367 ORTHO05D004284 5.9e-11 71.2 96 58.3
Sp2g30320 Schrenkiella parvula HOM05D003367 ORTHO05D004284 5.9e-11 71.2 96 58.3
BcaC03g18415 Brassica carinata HOM05D003367 ORTHO05D004284 7.7e-11 70.9 96 58.3
BcaC03g18421 Brassica carinata HOM05D003367 ORTHO05D004284 7.7e-11 70.9 96 58.3
BolC2t12552H Brassica oleracea HOM05D003367 ORTHO05D004284 7.7e-11 70.9 96 58.3
Peaxi162Scf00083g00083 Petunia axillaris HOM05D003367 ORTHO05D004284 1.0e-10 70.5 85 56.5
AT5G66280 Arabidopsis thaliana HOM05D003367 ORTHO05D004284 1.3e-10 70.1 96 57.3
BcaB07g29667 Brassica carinata HOM05D003367 ORTHO05D004284 1.7e-10 69.7 96 57.3
A02p44540 Brassica napus HOM05D003367 ORTHO05D004284 1.7e-10 69.7 96 57.3
C02p64940 Brassica napus HOM05D003367 ORTHO05D004284 1.7e-10 69.7 96 57.3
BraA02t09370Z Brassica rapa HOM05D003367 ORTHO05D004284 1.7e-10 69.7 96 57.3
Aa31LG1G14780 Aethionema arabicum HOM05D003367 ORTHO05D004284 2.2e-10 69.3 96 57.3
BcaB02g10035 Brassica carinata HOM05D003367 ORTHO05D004284 2.9e-10 68.9 96 57.3
A07p17560 Brassica napus HOM05D003367 ORTHO05D004284 2.9e-10 68.9 96 57.3
BraA07t29476Z Brassica rapa HOM05D003367 ORTHO05D004284 2.9e-10 68.9 96 57.3
Thhalv10010458m.g Eutrema salsugineum HOM05D003367 ORTHO05D004284 3.8e-10 68.6 96 57.3
Sp5g11050 Schrenkiella parvula HOM05D003367 ORTHO05D004284 3.8e-10 68.6 96 57.3
Solyc02g084210.1 Solanum lycopersicum HOM05D003367 ORTHO05D004284 3.8e-10 68.6 85 55.3
Carub.0008s2821 Capsella rubella HOM05D003367 ORTHO05D004284 5.0e-10 68.2 96 57.3
Nitab4.5_0005721g0010 Nicotiana tabacum HOM05D003367 ORTHO05D004284 5.0e-10 68.2 85 55.3
CSS0016130 Camellia sinensis var. sinensis HOM05D003367 ORTHO05D004284 6.5e-10 67.8 85 56.5
CSS0047804 Camellia sinensis var. sinensis HOM05D003367 ORTHO05D004284 6.5e-10 67.8 85 56.5
Atru.chr3.783 Acer truncatum HOM05D003367 ORTHO05D004284 8.5e-10 67.4 85 56.5
CARHR160760 Cardamine hirsuta HOM05D003367 ORTHO05D004284 8.5e-10 67.4 96 56.2
Glyma.11G075700 Glycine max HOM05D003367 ORTHO05D004284 8.5e-10 67.4 85 57.6
Lsat_1_v5_gn_4_149120 Lactuca sativa HOM05D003367 ORTHO05D004284 8.5e-10 67.4 85 56.5
Aa31LG4G19240 Aethionema arabicum HOM05D003367 ORTHO05D004284 1.1e-09 67.0 85 56.5
C09p11870 Brassica napus HOM05D036850 ORTHO05D032267 1.1e-09 67.0 36 97.2
BolC9t54076H Brassica oleracea HOM05D036850 ORTHO05D032267 1.1e-09 67.0 36 97.2
Cpa.g.sc6.230 Carica papaya HOM05D003367 ORTHO05D004284 1.1e-09 67.0 85 57.6
Ca_24909_v3 Cicer arietinum L. HOM05D003367 ORTHO05D004284 1.1e-09 67.0 85 56.5
Hma1.2p1_0266F.1_g106820 Hydrangea macrophylla HOM05D003367 ORTHO05D004284 1.1e-09 67.0 85 56.5
Lj2g0022271 Lotus japonicus HOM05D003367 ORTHO05D004284 1.1e-09 67.0 85 56.5
MBI09_g43736_MAGBIO Magnolia biondii HOM05D003367 ORTHO05D004284 1.1e-09 67.0 85 56.5
CDE05G3324 Ceratophyllum demersum HOM05D003367 ORTHO05D004284 1.4e-09 66.6 85 56.5
ECA232G0085 Erigeron canadensis HOM05D003367 ORTHO05D004284 1.4e-09 66.6 85 57.6
Eucgr.J02407 Eucalyptus grandis HOM05D003367 ORTHO05D004284 1.4e-09 66.6 85 56.5
Phvul.002G110300 Phaseolus vulgaris HOM05D003367 ORTHO05D004284 1.4e-09 66.6 85 56.5
PGR119G0157 Punica granatum HOM05D003367 ORTHO05D004284 1.4e-09 66.6 85 56.5
Carub.0005s1756 Capsella rubella HOM05D003367 ORTHO05D004284 1.9e-09 66.2 96 55.2
COL.COLO4_21932 Corchorus olitorius HOM05D003367 ORTHO05D004284 1.9e-09 66.2 85 56.5
DCAR_017348 Daucus carota HOM05D003367 ORTHO05D004284 1.9e-09 66.2 85 57.6
Duzib264G0302 Durio zibethinus HOM05D003367 ORTHO05D004284 1.9e-09 66.2 85 56.5
VMungo1215G0198 Vigna mungo HOM05D003367 ORTHO05D004284 1.9e-09 66.2 85 57.6
BcaB01g00545 Brassica carinata HOM05D003367 ORTHO05D004284 2.5e-09 65.9 115 51.3
A09p44210 Brassica napus HOM05D003367 ORTHO05D004284 2.5e-09 65.9 96 56.2
BolC8t50260H Brassica oleracea HOM05D003367 ORTHO05D004284 2.5e-09 65.9 96 56.2
BraA09t39882Z Brassica rapa HOM05D003367 ORTHO05D004284 2.5e-09 65.9 96 56.2
Glyma.01G167500 Glycine max HOM05D003367 ORTHO05D004284 2.5e-09 65.9 85 56.5
Psat2g155320 Pisum sativum HOM05D003367 ORTHO05D004284 2.5e-09 65.9 85 55.3
Sed0007406 Sechium edule HOM05D003367 ORTHO05D004284 2.5e-09 65.9 85 56.5
TWI73G0147 Tripterygium wilfordii HOM05D003367 ORTHO05D004284 2.5e-09 65.9 85 56.5
ClCG07G008430 Citrullus lanatus HOM05D003367 ORTHO05D004284 3.2e-09 65.5 85 55.3
Lalb_Chr05g0212431 Lupinus albus HOM05D003367 ORTHO05D004284 3.2e-09 65.5 85 56.5
Sabra07G0011300 Salix brachista HOM05D003367 ORTHO05D004284 3.2e-09 65.5 85 57.6
Hund26926 Selenicereus undatus HOM05D003367 ORTHO05D004284 3.2e-09 65.5 85 55.3
Sopen02g028950 Solanum pennellii HOM05D003367 ORTHO05D004284 3.2e-09 65.5 85 54.1
PGSC0003DMG400003633 Solanum tuberosum HOM05D003367 ORTHO05D004284 3.2e-09 65.5 85 54.1
unitig_749.g13597 Utricularia gibba HOM05D003367 ORTHO05D004284 3.2e-09 65.5 85 55.3
Ah.05g168650 Amaranthus hybridus HOM05D003367 ORTHO05D004284 4.2e-09 65.1 85 55.3
Lalb_Chr16g0377551 Lupinus albus HOM05D003367 ORTHO05D004284 4.2e-09 65.1 85 56.5
AT3G51160 Arabidopsis thaliana HOM05D003367 ORTHO05D004284 5.5e-09 64.7 96 54.2
EL10Ac1g00676 Beta vulgaris HOM05D003367 ORTHO05D004284 5.5e-09 64.7 85 54.1
C08p26430 Brassica napus HOM05D003367 ORTHO05D004284 5.5e-09 64.7 96 55.2
CDE04G2821 Ceratophyllum demersum HOM05D003367 ORTHO05D004284 5.5e-09 64.7 85 55.3
Dinv33616 Davidia involucrata HOM05D003367 ORTHO05D004284 5.5e-09 64.7 85 56.5
Medtr5g021760 Medicago truncatula HOM05D003367 ORTHO05D004284 5.5e-09 64.7 85 55.3
Medtr5g021770 Medicago truncatula HOM05D003367 ORTHO05D004284 5.5e-09 64.7 85 55.3
Nitab4.5_0004254g0040 Nicotiana tabacum HOM05D003367 ORTHO05D004284 5.5e-09 64.7 85 52.9
vmacro18421 Vaccinium macrocarpon HOM05D003367 ORTHO05D004284 5.5e-09 64.7 85 55.3
Aqoxy6G02322 Aquilegia oxysepala HOM05D003367 ORTHO05D004284 7.2e-09 64.3 85 55.3
A03p48180 Brassica napus HOM05D003367 ORTHO05D004284 7.2e-09 64.3 96 55.2
C07p46210 Brassica napus HOM05D003367 ORTHO05D004284 7.2e-09 64.3 96 55.2
BolC7t45137H Brassica oleracea HOM05D003367 ORTHO05D004284 7.2e-09 64.3 96 55.2
CANSAT78G2109 Cannabis sativa HOM05D003367 ORTHO05D004284 7.2e-09 64.3 85 55.3
CiPaw.08G133300 Carya illinoinensis HOM05D003367 ORTHO05D004284 7.2e-09 64.3 85 55.3
CDE05G2114 Ceratophyllum demersum HOM05D003367 ORTHO05D004284 7.2e-09 64.3 85 55.3
HanXRQChr11g0325961 Helianthus annuus HOM05D003367 ORTHO05D004284 7.2e-09 64.3 85 54.1
Potri.007G013900 Populus trichocarpa HOM05D003367 ORTHO05D004284 7.2e-09 64.3 85 56.5
Prupe.7G166700 Prunus persica HOM05D003367 ORTHO05D004284 7.2e-09 64.3 85 56.5
PGR142G3173 Punica granatum HOM05D003367 ORTHO05D004284 7.2e-09 64.3 85 55.3
QL06p033636 Quercus lobata HOM05D003367 ORTHO05D004284 7.2e-09 64.3 85 54.1
BcaC09g50085 Brassica carinata HOM05D003367 ORTHO05D004284 9.4e-09 63.9 96 55.2
A01p23590 Brassica napus HOM05D003367 ORTHO05D004284 9.4e-09 63.9 96 55.2
C01p29280 Brassica napus HOM05D003367 ORTHO05D004284 9.4e-09 63.9 96 55.2
BolC1t02854H Brassica oleracea HOM05D003367 ORTHO05D004284 9.4e-09 63.9 96 55.2
CDE02G3936 Ceratophyllum demersum HOM05D003367 ORTHO05D004284 9.4e-09 63.9 85 55.3
AUR62023322 Chenopodium quinoa HOM05D003367 ORTHO05D004284 9.4e-09 63.9 85 54.1
AUR62038010 Chenopodium quinoa HOM05D003367 ORTHO05D004284 9.4e-09 63.9 85 54.1
Gohir.A11G176600 Gossypium hirsutum HOM05D003367 ORTHO05D004284 9.4e-09 63.9 85 55.3
Gohir.D11G184400 Gossypium hirsutum HOM05D003367 ORTHO05D004284 9.4e-09 63.9 85 55.3
Gorai.007G196100 Gossypium raimondii HOM05D003367 ORTHO05D004284 9.4e-09 63.9 85 55.3
MD02G1134100 Malus domestica HOM05D003367 ORTHO05D004284 9.4e-09 63.9 85 56.5
MD15G1247100 Malus domestica HOM05D003367 ORTHO05D004284 9.4e-09 63.9 85 56.5
Mapoly0096s0040 Marchantia polymorpha HOM05D003367 ORTHO05D004284 9.4e-09 63.9 96 53.1
TPR.G2410 Trifolium pratense HOM05D003367 ORTHO05D004284 9.4e-09 63.9 85 55.3
TWI09G0379 Tripterygium wilfordii HOM05D003367 ORTHO05D004284 9.4e-09 63.9 85 55.3
BcaC06g33050 Brassica carinata HOM05D003367 ORTHO05D004284 1.2e-08 63.5 96 55.2
BraA03t13926Z Brassica rapa HOM05D003367 ORTHO05D004284 1.2e-08 63.5 96 55.2
MELO3C032603.2 Cucumis melo HOM05D003367 ORTHO05D004284 1.2e-08 63.5 85 54.1
CsaV3_4G005740 Cucumis sativus L. HOM05D003367 ORTHO05D004284 1.2e-08 63.5 85 54.1
Duzib147G0565 Durio zibethinus HOM05D003367 ORTHO05D004284 1.2e-08 63.5 85 55.3
Duzib187G0451 Durio zibethinus HOM05D003367 ORTHO05D004284 1.2e-08 63.5 85 55.3
Nn1g09238 Nelumbo nucifera HOM05D003367 ORTHO05D004284 1.2e-08 63.5 85 56.5
Nitab4.5_0006764g0050 Nicotiana tabacum HOM05D003367 ORTHO05D004284 1.2e-08 63.5 79 53.2
Oeu048453.1 Olea europaea HOM05D003367 ORTHO05D004284 1.2e-08 63.5 85 55.3
AL5G31590 Arabidopsis lyrata HOM05D003367 ORTHO05D004284 1.6e-08 63.2 96 53.1
CAN.G843.17 Capsicum annuum HOM05D003367 ORTHO05D004284 1.6e-08 63.2 85 54.1
Ciclev10025903m.g Citrus clementina HOM05D003367 ORTHO05D004284 1.6e-08 63.2 85 55.3
FAN23G1403 Fragaria x ananassa HOM05D003367 ORTHO05D004284 1.6e-08 63.2 85 54.1
Manes.02G102800 Manihot esculenta HOM05D003367 ORTHO05D004284 1.6e-08 63.2 85 55.3
RcHm_v2.0_Chr2g0099631 Rosa chinensis HOM05D003367 ORTHO05D004284 1.6e-08 63.2 85 52.9
THA.LOC104821321 Tarenaya hassleriana HOM05D003367 ORTHO05D004284 1.6e-08 63.2 85 56.5
Thecc.01G021100 Theobroma cacao HOM05D003367 ORTHO05D004284 1.6e-08 63.2 85 55.3
Cc07_g10580 Coffea canephora HOM05D003367 ORTHO05D004284 2.1e-08 62.8 85 54.1
FvH4_1g12010 Fragaria vesca HOM05D003367 ORTHO05D004284 2.1e-08 62.8 85 52.9
FAN19G0129 Fragaria x ananassa HOM05D003367 ORTHO05D004284 2.1e-08 62.8 85 52.9
FAN26G0117 Fragaria x ananassa HOM05D003367 ORTHO05D004284 2.1e-08 62.8 85 52.9
FAN28G2312 Fragaria x ananassa HOM05D003367 ORTHO05D004284 2.1e-08 62.8 85 52.9
Peaxi162Scf00256g00031 Petunia axillaris HOM05D003367 ORTHO05D004284 2.1e-08 62.8 85 54.1
Potri.005G116200 Populus trichocarpa HOM05D003367 ORTHO05D004284 2.1e-08 62.8 96 52.1
Sabra05G0095200 Salix brachista HOM05D003367 ORTHO05D004284 2.1e-08 62.8 85 54.1
Nitab4.5_0009266g0050 Nicotiana tabacum HOM05D003367 ORTHO05D004284 2.7e-08 62.4 79 51.9
THA.LOC104826596 Tarenaya hassleriana HOM05D003367 ORTHO05D004284 2.7e-08 62.4 85 55.3
BcaNung00396 Brassica carinata HOM05D003367 ORTHO05D004284 3.6e-08 62.0 96 53.1
Rhsim08G0034400 Rhododendron simsii HOM05D003367 ORTHO05D004284 3.6e-08 62.0 85 52.9
Hund17160 Selenicereus undatus HOM05D003367 ORTHO05D004284 3.6e-08 62.0 85 54.1
Solyc03g118270.1 Solanum lycopersicum HOM05D003367 ORTHO05D004284 3.6e-08 62.0 85 54.1
Sopen03g037180 Solanum pennellii HOM05D003367 ORTHO05D004284 3.6e-08 62.0 85 54.1
SMO146G0088 Selaginella moellendorffii HOM05D003367 ORTHO05D004284 4.7e-08 61.6 85 55.3
PGSC0003DMG400014178 Solanum tuberosum HOM05D003367 ORTHO05D004284 4.7e-08 61.6 85 54.1
SGA_v2.0_scaffold137G35099 Striga asiatica HOM05D003367 ORTHO05D004284 4.7e-08 61.6 85 54.1
TAR381G0223 Trochodendron aralioides HOM05D003367 ORTHO05D004284 4.7e-08 61.6 85 52.9
Migut.H01145 Erythranthe guttata HOM05D003367 ORTHO05D004284 6.1e-08 61.2 85 54.1
Sc23g0004000 Simmondsia chinensis HOM05D003367 ORTHO05D004284 6.1e-08 61.2 85 52.9
unitig_21.g20543 Utricularia gibba HOM05D003367 ORTHO05D004284 6.1e-08 61.2 85 51.8
MSTRG.23415 Avicennia marina HOM05D003367 ORTHO05D004284 7.9e-08 60.8 85 52.9
Nn5g29270 Nelumbo nucifera HOM05D003367 ORTHO05D004284 7.9e-08 60.8 85 54.1
PSO541G5137 Papaver somniferum HOM05D003367 ORTHO05D004284 7.9e-08 60.8 85 54.1
PSO675G4838 Papaver somniferum HOM05D003367 ORTHO05D004284 7.9e-08 60.8 85 54.1
Mapoly0053s0025 Marchantia polymorpha HOM05D003367 ORTHO05D004284 1.0e-07 60.5 85 51.8
Haze_03793 Corylus avellana HOM05D003367 ORTHO05D004284 1.4e-07 60.1 85 51.8
Gohir.A12G060200 Gossypium hirsutum HOM05D003367 ORTHO05D004284 1.4e-07 60.1 85 52.9
Cfa006958 Carpinus fangiana HOM05D003367 ORTHO05D004284 1.8e-07 59.7 85 51.8
Lj2A466T49 Lonicera japonica HOM05D003367 ORTHO05D004284 1.8e-07 59.7 46 76.1
Lj2A474T35 Lonicera japonica HOM05D003367 ORTHO05D004284 1.8e-07 59.7 46 76.1
Manes.01G144700 Manihot esculenta HOM05D003367 ORTHO05D004284 2.3e-07 59.3 85 54.1
Mapoly0040s0032 Marchantia polymorpha HOM05D003367 ORTHO05D004284 2.3e-07 59.3 85 50.6
Hma1.2p1_2281F.1_g318760 Hydrangea macrophylla HOM05D003367 ORTHO05D004284 3.0e-07 58.9 85 52.9
Mapoly0096s0039 Marchantia polymorpha HOM05D003367 ORTHO05D004284 3.0e-07 58.9 96 50.0
HPP92_002104 Vanilla planifolia HOM05D003367 ORTHO05D004284 3.9e-07 58.5 85 51.8
BcaNung04510 Brassica carinata HOM05D003367 ORTHO05D004284 5.1e-07 58.2 46 73.9
Os06g0137700 Oryza sativa ssp. japonica HOM05D003367 ORTHO05D004284 5.1e-07 58.2 85 50.6
Pp3c17_11890 Physcomitrium patens HOM05D003367 ORTHO05D004284 5.1e-07 58.2 83 53.0
Lsat_1_v5_gn_4_152760 Lactuca sativa HOM05D003367 ORTHO05D004284 6.7e-07 57.8 85 52.9
TAR628G1446 Trochodendron aralioides HOM05D003367 ORTHO05D004284 6.7e-07 57.8 85 52.9
Pp3c5_15180 Physcomitrium patens HOM05D003367 ORTHO05D004284 8.8e-07 57.4 83 53.0
Pp3c14_6460 Physcomitrium patens HOM05D003367 ORTHO05D004284 1.1e-06 57.0 83 53.0
SEGI_09344 Sequoiadendron giganteum HOM05D003367 ORTHO05D004284 2.0e-06 56.2 85 49.4
CBR_g50778 Chara braunii HOM05D003367 ORTHO05D004284 2.6e-06 55.8 85 49.4
Pp3c6_12710 Physcomitrium patens HOM05D003367 ORTHO05D004284 2.6e-06 55.8 83 51.8
Zm00001eb377770 Zea mays HOM05D003367 ORTHO05D004284 4.4e-06 55.1 85 48.2
Zm00001eb270090 Zea mays HOM05D003367 ORTHO05D004284 5.7e-06 54.7 85 48.2
Nn6g32295 Nelumbo nucifera HOM05D003367 ORTHO05D017691 7.4e-06 54.3 46 69.6


User provided reference genes

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