Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20728 Brassica carinata HOM05D005383 ORTHO05D006722 1.4e-154 550.1 383 100.0
BolC9t56882H Brassica oleracea HOM05D005383 ORTHO05D006722 1.4e-154 550.1 383 100.0
BraSC35t46002Z Brassica rapa HOM05D005383 ORTHO05D006722 5.5e-151 538.1 383 99.0
A10p07980 Brassica napus HOM05D005383 ORTHO05D006722 1.8e-149 533.1 383 98.2
C09p39820 Brassica napus HOM05D005383 ORTHO05D006722 4.5e-145 518.5 367 98.4
BcaB08g35467 Brassica carinata HOM05D005383 ORTHO05D006722 4.2e-127 458.8 383 88.5
Sp6g13330 Schrenkiella parvula HOM05D005383 ORTHO05D006722 1.0e-125 454.1 382 89.0
Thhalv10028723m.g Eutrema salsugineum HOM05D005383 ORTHO05D006722 2.7e-113 412.9 389 83.5
C03p19190 Brassica napus HOM05D005383 ORTHO05D006722 1.1e-111 407.5 388 81.7
BolC3t14307H Brassica oleracea HOM05D005383 ORTHO05D006722 2.7e-110 402.9 402 69.7
Carub.0006s2631 Capsella rubella HOM05D005383 ORTHO05D006722 3.7e-107 392.5 388 79.9
A03p16300 Brassica napus HOM05D005383 ORTHO05D006722 1.8e-106 390.2 391 79.5
AL6G41240 Arabidopsis lyrata HOM05D005383 ORTHO05D006722 5.4e-106 388.7 387 81.4
AT4G06634 Arabidopsis thaliana HOM05D005383 ORTHO05D006722 1.6e-105 387.1 389 80.7
BraA03t10921Z Brassica rapa HOM05D005383 ORTHO05D006722 6.1e-102 375.2 402 67.9
CARHR260070 Cardamine hirsuta HOM05D005383 ORTHO05D006722 8.0e-102 374.8 391 79.5
BcaC01g06099 Brassica carinata HOM05D005383 ORTHO05D006722 3.5e-97 359.4 388 75.8
BcaC01g06075 Brassica carinata HOM05D005383 ORTHO05D006722 4.0e-93 345.9 390 74.6
Aa31LG3G14030 Aethionema arabicum HOM05D005383 ORTHO05D006722 5.9e-89 332.0 387 70.0
THA.LOC104801420 Tarenaya hassleriana HOM05D005383 ORTHO05D006722 3.6e-86 322.8 379 71.0
Cpa.g.sc161.1 Carica papaya HOM05D005383 ORTHO05D006722 5.4e-82 308.9 383 67.9
CANSAT54G1323 Cannabis sativa HOM05D005383 ORTHO05D006722 9.2e-82 308.1 374 68.7
RcHm_v2.0_Chr7g0220861 Rosa chinensis HOM05D005383 ORTHO05D006722 3.5e-81 306.2 388 69.1
FAN08G2879 Fragaria x ananassa HOM05D005383 ORTHO05D006722 4.6e-81 305.8 372 68.8
FvH4_5g28700 Fragaria vesca HOM05D005383 ORTHO05D006722 1.0e-80 304.7 372 68.8
Ca_00052_v3 Cicer arietinum L. HOM05D005383 ORTHO05D006722 5.0e-80 302.4 374 67.6
MD08G1239600 Malus domestica HOM05D005383 ORTHO05D006722 6.6e-80 302.0 389 67.9
FAN13G0305 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.5e-79 300.8 395 65.6
Potri.004G221700 Populus trichocarpa HOM05D005383 ORTHO05D006722 1.9e-79 300.4 379 70.2
Rhsim11G0125900 Rhododendron simsii HOM05D005383 ORTHO05D006722 9.5e-79 298.1 378 68.8
COL.COLO4_17761 Corchorus olitorius HOM05D005383 ORTHO05D006722 3.6e-78 296.2 371 53.6
Prupe.1G576100 Prunus persica HOM05D005383 ORTHO05D006722 3.6e-78 296.2 386 59.6
Duzib248G0552 Durio zibethinus HOM05D005383 ORTHO05D006722 3.1e-77 293.1 371 53.1
GSVIVG01023286001 Vitis vinifera HOM05D005383 ORTHO05D006722 5.2e-77 292.4 371 65.8
Ciclev10001534m.g Citrus clementina HOM05D005383 ORTHO05D006722 1.2e-76 291.2 373 67.0
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 1.2e-76 291.2 336 69.6
Gohir.D01G173100 Gossypium hirsutum HOM05D005383 ORTHO05D006722 1.5e-76 290.8 371 67.1
Thecc.02G025800 Theobroma cacao HOM05D005383 ORTHO05D006722 2.6e-76 290.0 370 67.6
Gorai.002G214700 Gossypium raimondii HOM05D005383 ORTHO05D006722 3.4e-76 289.7 371 66.8
Atru.chr6.733 Acer truncatum HOM05D005383 ORTHO05D006722 4.4e-76 289.3 372 66.7
CiPaw.05G051100 Carya illinoinensis HOM05D005383 ORTHO05D006722 5.8e-76 288.9 364 67.0
Gohir.A01G182000 Gossypium hirsutum HOM05D005383 ORTHO05D006722 5.8e-76 288.9 371 67.1
Potri.003G010400 Populus trichocarpa HOM05D005383 ORTHO05D006722 5.8e-76 288.9 379 67.3
QL02p099934 Quercus lobata HOM05D005383 ORTHO05D006722 9.8e-76 288.1 363 67.8
CSS0013900 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 2.2e-75 287.0 374 66.8
CSS0016011 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 2.2e-75 287.0 374 66.8
CAN.G968.1 Capsicum annuum HOM05D005383 ORTHO05D006722 2.2e-75 287.0 384 68.8
TWI23G0375 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 3.7e-75 286.2 367 68.1
Glyma.08G126300 Glycine max HOM05D005383 ORTHO05D006722 8.3e-75 285.0 386 65.5
Sed0026787 Sechium edule HOM05D005383 ORTHO05D006722 1.1e-74 284.6 382 64.1
TPR.G2110 Trifolium pratense HOM05D005383 ORTHO05D006722 1.9e-74 283.9 391 65.5
VMungo0251G3735 Vigna mungo HOM05D005383 ORTHO05D006722 1.9e-74 283.9 386 64.5
Manes.10G120600 Manihot esculenta HOM05D005383 ORTHO05D006722 4.1e-74 282.7 387 67.4
Ciclev10003783m.g Citrus clementina HOM05D005383 ORTHO05D006722 9.2e-74 281.6 373 66.5
CiPaw.06G143700 Carya illinoinensis HOM05D005383 ORTHO05D006722 1.6e-73 280.8 375 56.5
Glyma.05G167900 Glycine max HOM05D005383 ORTHO05D006722 1.6e-73 280.8 385 64.7
Lalb_Chr07g0185851 Lupinus albus HOM05D005383 ORTHO05D006722 1.6e-73 280.8 380 66.1
Nitab4.5_0000548g0200 Nicotiana tabacum HOM05D005383 ORTHO05D006722 2.1e-73 280.4 383 64.2
DCAR_025351 Daucus carota HOM05D005383 ORTHO05D006722 2.7e-73 280.0 349 66.8
Solyc03g083310.4 Solanum lycopersicum HOM05D005383 ORTHO05D006722 3.5e-73 279.6 377 63.4
Eucgr.G00356 Eucalyptus grandis HOM05D005383 ORTHO05D006722 6.0e-73 278.9 373 65.4
Nitab4.5_0009812g0010 Nicotiana tabacum HOM05D005383 ORTHO05D006722 1.3e-72 277.7 371 63.3
Phvul.002G248200 Phaseolus vulgaris HOM05D005383 ORTHO05D006722 1.3e-72 277.7 386 63.7
arahy.Tifrunner.gnm1.ann1.UJ0XJV Arachis hypogaea HOM05D005383 ORTHO05D006722 2.3e-72 276.9 372 65.1
Lj4g0022432 Lotus japonicus HOM05D005383 ORTHO05D006722 2.3e-72 276.9 379 65.4
Psat1g221920 Pisum sativum HOM05D005383 ORTHO05D006722 2.3e-72 276.9 374 65.8
Cc02_g22940 Coffea canephora HOM05D005383 ORTHO05D006722 3.9e-72 276.2 381 63.3
TWI59G0781 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 3.9e-72 276.2 368 69.0
Hma1.2p1_1108F.1_g257860 Hydrangea macrophylla HOM05D005383 ORTHO05D006722 2.5e-71 273.5 386 65.5
MELO3C011837.2 Cucumis melo HOM05D005383 ORTHO05D006722 7.3e-71 271.9 382 66.0
Dinv01847 Davidia involucrata HOM05D005383 ORTHO05D006722 1.2e-70 271.2 356 65.7
TAR628G0519 Trochodendron aralioides HOM05D005383 ORTHO05D006722 2.1e-70 270.4 370 63.0
Haze_01820 Corylus avellana HOM05D005383 ORTHO05D006722 2.8e-70 270.0 400 52.0
PGSC0003DMG400009082 Solanum tuberosum HOM05D005383 ORTHO05D006722 6.2e-70 268.9 377 62.1
CsaV3_5G029920 Cucumis sativus L. HOM05D005383 ORTHO05D006722 1.4e-69 267.7 382 64.7
vmacro01730 Vaccinium macrocarpon HOM05D005383 ORTHO05D006722 2.3e-69 266.9 375 65.9
EL10Ac2g02705 Beta vulgaris HOM05D005383 ORTHO05D006722 5.2e-69 265.8 373 63.8
Nn5g27588 Nelumbo nucifera HOM05D005383 ORTHO05D006722 6.8e-69 265.4 382 62.0
Migut.B00804 Erythranthe guttata HOM05D005383 ORTHO05D006722 5.8e-68 262.3 363 65.6
MSTRG.5117 Avicennia marina HOM05D005383 ORTHO05D006722 6.4e-67 258.8 370 61.9
Hund12945 Selenicereus undatus HOM05D005383 ORTHO05D006722 8.4e-67 258.5 386 55.7
Sopen03g023060 Solanum pennellii HOM05D005383 ORTHO05D006722 4.1e-66 256.1 380 60.5
Lj9A301T38 Lonicera japonica HOM05D005383 ORTHO05D006722 1.2e-65 254.6 351 69.8
TAR381G0956 Trochodendron aralioides HOM05D005383 ORTHO05D006722 1.6e-65 254.2 366 61.7
Lalb_Chr13g0295611 Lupinus albus HOM05D005383 ORTHO05D006722 7.8e-65 251.9 380 63.2
Lsat_1_v5_gn_4_6600 Lactuca sativa HOM05D005383 ORTHO05D006722 1.0e-64 251.5 349 65.3
Aqoxy6G00141 Aquilegia oxysepala HOM05D005383 ORTHO05D006722 5.1e-64 249.2 340 64.4
Sed0022153 Sechium edule HOM05D005383 ORTHO05D006722 5.1e-64 249.2 371 62.5
PSO063G2254 Papaver somniferum HOM05D005383 ORTHO05D006722 2.5e-63 246.9 372 62.9
Sabra03G0005300 Salix brachista HOM05D005383 ORTHO05D006722 1.2e-62 244.6 494 37.4
PGR042G1418 Punica granatum HOM05D005383 ORTHO05D006722 2.8e-62 243.4 380 60.8
HanXRQChr08g0209021 Helianthus annuus HOM05D005383 ORTHO05D006722 6.2e-62 242.3 350 63.4
SGA_v2.0_scaffold42G15921 Striga asiatica HOM05D005383 ORTHO05D006722 1.4e-61 241.1 376 62.2
arahy.Tifrunner.gnm1.ann1.E4SRBI Arachis hypogaea HOM05D005383 ORTHO05D006722 1.5e-60 237.7 342 64.9
PSO017G2626 Papaver somniferum HOM05D005383 ORTHO05D006722 4.4e-60 236.1 372 61.8
arahy.Tifrunner.gnm1.ann1.I6AGPX Arachis hypogaea HOM05D005383 ORTHO05D006722 1.3e-59 234.6 342 64.3
Actinidia00189 Actinidia chinensis HOM05D005383 ORTHO05D006722 1.7e-59 234.2 258 77.1
CDE02G2650 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 4.2e-58 229.6 346 63.0
CDE08G1140 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 4.2e-58 229.6 345 63.2
ECA233G1887 Erigeron canadensis HOM05D005383 ORTHO05D006722 6.6e-56 222.2 378 60.6
Ciclev10003892m.g Citrus clementina HOM05D005383 ORTHO05D006722 3.3e-55 219.9 326 56.1
HanXRQChr04g0103661 Helianthus annuus HOM05D005383 ORTHO05D006722 1.3e-54 218.0 393 56.5
Lsat_1_v5_gn_8_160061 Lactuca sativa HOM05D005383 ORTHO05D006722 1.7e-51 207.6 273 65.6
unitig_699.g19853 Utricularia gibba HOM05D005383 ORTHO05D006722 2.4e-50 203.8 370 37.0
HPP92_013744 Vanilla planifolia HOM05D006763 ORTHO05D008659 4.6e-49 199.5 311 62.7
Sc07g0004970 Simmondsia chinensis HOM05D005383 ORTHO05D006722 2.5e-47 193.7 306 66.0
MSTRG.16504 Avicennia marina HOM05D005383 ORTHO05D006722 9.0e-45 185.3 285 67.4
Oeu036675.1 Olea europaea HOM05D005383 ORTHO05D006722 1.2e-44 184.9 293 64.8
HPP92_009272 Vanilla planifolia HOM05D005383 ORTHO05D006722 1.5e-44 184.5 332 58.4
Sabra01G0167800 Salix brachista HOM05D005383 ORTHO05D006722 1.9e-42 177.6 192 60.9
ATR0071G030 Amborella trichopoda HOM05D005383 ORTHO05D006722 2.1e-41 174.1 321 60.4
Zm00001eb267130 Zea mays HOM05D005383 ORTHO05D006722 5.6e-39 166.0 388 55.4
MD15G1431100 Malus domestica HOM05D005383 ORTHO05D006722 2.1e-38 164.1 310 58.4
unitig_747.g21262 Utricularia gibba HOM05D005383 ORTHO05D006722 1.4e-37 161.4 327 56.9
Actinidia39015 Actinidia chinensis HOM05D005383 ORTHO05D006722 1.8e-37 161.0 125 76.0
FAN04G2588 Fragaria x ananassa HOM05D005383 ORTHO05D006722 3.1e-37 160.2 134 73.9
Zm00001eb243510 Zea mays HOM05D005383 ORTHO05D006722 3.1e-37 160.2 312 57.7
Os05g0106000 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 5.3e-37 159.5 389 50.6
Zm00001eb181970 Zea mays HOM05D005383 ORTHO05D006722 7.6e-36 155.6 317 56.8
Os02g0551900 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 4.9e-35 152.9 366 53.8
ClCG11G013400 Citrullus lanatus HOM05D005383 ORTHO05D006722 1.9e-34 151.0 134 69.4
AUR62041111 Chenopodium quinoa HOM05D005383 ORTHO05D006722 4.2e-34 149.8 154 57.1
Peaxi162Scf03254g00012 Petunia axillaris HOM05D005383 ORTHO05D006722 9.3e-34 148.7 175 46.9
CAN.G982.21 Capsicum annuum HOM05D005383 ORTHO05D006722 2.8e-30 137.1 180 46.7
Mapoly0095s0037 Marchantia polymorpha HOM05D005383 ORTHO05D006722 4.5e-28 129.8 337 52.5
AagrBONN_evm.TU.Sc2ySwM_228.1706 Anthoceros agrestis HOM05D005383 ORTHO05D006722 2.1e-25 120.9 244 61.9
SEGI_13518 Sequoiadendron giganteum HOM05D005383 ORTHO05D006722 1.3e-24 118.2 117 62.4
CBR_g52462 Chara braunii HOM05D005383 ORTHO05D006722 6.7e-24 115.9 256 59.4
FAN18G2475 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.9e-23 114.4 134 59.7
ATR0071G005 Amborella trichopoda HOM05D005383 ORTHO05D006722 1.5e-20 104.8 92 58.7
Pp3c7_7980 Physcomitrium patens HOM05D005383 ORTHO05D006722 4.6e-17 93.2 335 48.7
SMO347G0081 Selaginella moellendorffii HOM05D005383 ORTHO05D006722 1.4e-16 91.7 227 53.7
Peaxi162Scf00003g03953 Petunia axillaris HOM05D000011 ORTHO05D011267 1.2e-12 78.6 162 32.1
arahy.Tifrunner.gnm1.ann1.VA1YNF Arachis hypogaea HOM05D005383 ORTHO05D006722 1.7e-11 74.7 86 66.3
arahy.Tifrunner.gnm1.ann1.0L29ML Arachis hypogaea HOM05D005383 ORTHO05D006722 1.8e-08 64.7 34 79.4
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 8.8e-08 62.4 60 51.7
arahy.Tifrunner.gnm1.ann1.XX0GIY Arachis hypogaea HOM05D005383 ORTHO05D006722 8.8e-08 62.4 34 76.5


User provided reference genes

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