Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20246 Brassica carinata HOM05D005801 ORTHO05D016715 4.9e-67 257.7 132 100.0
BolC9t57462H Brassica oleracea HOM05D005801 ORTHO05D016715 4.9e-67 257.7 132 100.0
C09p45950 Brassica napus HOM05D005801 ORTHO05D016715 8.4e-67 256.9 132 99.2
BcaC03g16316 Brassica carinata HOM05D005801 ORTHO05D016715 3.4e-28 128.6 79 82.3
BcaB07g33268 Brassica carinata HOM05D005801 ORTHO05D016715 4.2e-26 121.7 109 63.3
BcaB07g33439 Brassica carinata HOM05D005801 ORTHO05D016715 7.2e-26 120.9 109 62.4
Thhalv10002296m.g Eutrema salsugineum HOM05D005801 ORTHO05D008555 2.8e-22 109.0 73 74.0
Sp3g33210 Schrenkiella parvula HOM05D005801 ORTHO05D008555 2.8e-22 109.0 73 74.0
CARHR110310 Cardamine hirsuta HOM05D005801 ORTHO05D008555 1.8e-21 106.3 83 66.3
AL3G48350 Arabidopsis lyrata HOM05D005801 ORTHO05D008555 3.1e-21 105.5 83 65.1
BcaC06g36648 Brassica carinata HOM05D005801 ORTHO05D008555 5.3e-21 104.8 73 71.2
BolC7t40588H Brassica oleracea HOM05D005801 ORTHO05D008555 5.3e-21 104.8 73 71.2
AT2G19870 Arabidopsis thaliana HOM05D005801 ORTHO05D008555 6.9e-21 104.4 83 63.9
Carub.0003s3414 Capsella rubella HOM05D005801 ORTHO05D008555 6.9e-21 104.4 83 63.9
BcaB03g16775 Brassica carinata HOM05D005801 ORTHO05D008555 1.2e-20 103.6 73 69.9
C07p01810 Brassica napus HOM05D005801 ORTHO05D008555 2.0e-20 102.8 73 68.5
A07p00840 Brassica napus HOM05D005801 ORTHO05D008555 2.6e-20 102.4 73 68.5
BraA07t27882Z Brassica rapa HOM05D005801 ORTHO05D008555 2.6e-20 102.4 73 68.5
A07p26140 Brassica napus HOM05D005801 ORTHO05D013666 3.4e-20 102.1 70 77.1
Medtr8g102480 Medicago truncatula HOM05D005801 ORTHO05D008555 3.4e-20 102.1 85 57.6
BraA07t30260Z Brassica rapa HOM05D005801 ORTHO05D013666 1.7e-19 99.8 70 75.7
Gorai.001G010100 Gossypium raimondii HOM05D005801 ORTHO05D008555 6.5e-19 97.8 83 60.2
THA.LOC104814572 Tarenaya hassleriana HOM05D005801 ORTHO05D008555 8.5e-19 97.4 83 56.6
C03p54440 Brassica napus HOM05D005801 ORTHO05D041341 1.1e-18 97.1 59 81.4
BolC3t17730H Brassica oleracea HOM05D005801 ORTHO05D041341 1.1e-18 97.1 59 81.4
BraSC37t46140Z Brassica rapa HOM05D013368 ORTHO05D024584 1.1e-18 97.1 94 59.6
Gohir.D07G009800 Gossypium hirsutum HOM05D005801 ORTHO05D008555 1.4e-18 96.7 83 59.0
Psat7g016720 Pisum sativum HOM05D005801 ORTHO05D008555 1.4e-18 96.7 83 55.4
SalBow1G2797 Salvia bowleyana HOM05D005801 ORTHO05D008555 1.9e-18 96.3 83 55.4
BcaC04g22492 Brassica carinata HOM05D005801 ORTHO05D016715 2.5e-18 95.9 63 81.0
TAR636G1320 Trochodendron aralioides HOM05D005801 ORTHO05D008555 2.5e-18 95.9 83 54.2
Nitab4.5_0000066g0110 Nicotiana tabacum HOM05D005801 ORTHO05D008555 3.2e-18 95.5 83 53.0
Nitab4.5_0001703g0010 Nicotiana tabacum HOM05D005801 ORTHO05D008555 4.2e-18 95.1 83 51.8
Rhsim03G0236600 Rhododendron simsii HOM05D005801 ORTHO05D008555 4.2e-18 95.1 83 54.2
vmacro06253 Vaccinium macrocarpon HOM05D005801 ORTHO05D008555 4.2e-18 95.1 77 57.1
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 4.2e-18 95.1 73 60.3
CANSAT21G1751 Cannabis sativa HOM05D005801 ORTHO05D008555 5.5e-18 94.7 83 54.2
Lj4g0016627 Lotus japonicus HOM05D005801 ORTHO05D008555 5.5e-18 94.7 83 56.6
Actinidia32650 Actinidia chinensis HOM05D005801 ORTHO05D008555 7.2e-18 94.4 77 57.1
Gohir.A07G009500 Gossypium hirsutum HOM05D005801 ORTHO05D008555 7.2e-18 94.4 83 57.8
Phvul.002G308600 Phaseolus vulgaris HOM05D005801 ORTHO05D008555 7.2e-18 94.4 83 55.4
Prupe.7G219800 Prunus persica HOM05D005801 ORTHO05D008555 7.2e-18 94.4 73 60.3
Thecc.09G100600 Theobroma cacao HOM05D005801 ORTHO05D008555 7.2e-18 94.4 83 56.6
VMungo0251G1949 Vigna mungo HOM05D005801 ORTHO05D008555 7.2e-18 94.4 83 55.4
Peaxi162Scf00720g00044 Petunia axillaris HOM05D005801 ORTHO05D008555 9.4e-18 94.0 83 57.8
MSTRG.10602 Avicennia marina HOM05D005801 ORTHO05D008555 1.2e-17 93.6 73 60.3
MD02G1065700 Malus domestica HOM05D005801 ORTHO05D008555 1.2e-17 93.6 73 57.5
Duzib132G0722 Durio zibethinus HOM05D005801 ORTHO05D008555 1.6e-17 93.2 83 56.6
Duzib150G1339 Durio zibethinus HOM05D005801 ORTHO05D008555 1.6e-17 93.2 83 56.6
Lalb_Chr05g0223241 Lupinus albus HOM05D005801 ORTHO05D008555 1.6e-17 93.2 83 54.2
QL02p041581 Quercus lobata HOM05D005801 ORTHO05D008555 1.6e-17 93.2 83 53.0
arahy.Tifrunner.gnm1.ann1.BF4XTR Arachis hypogaea HOM05D005801 ORTHO05D008555 2.1e-17 92.8 73 60.3
C09p38590 Brassica napus HOM05D013368 ORTHO05D024584 2.7e-17 92.4 93 58.1
MBI04_g34406_MAGBIO Magnolia biondii HOM05D005801 ORTHO05D008555 2.7e-17 92.4 83 54.2
CSS0008146 Camellia sinensis var. sinensis HOM05D005801 ORTHO05D008555 3.6e-17 92.0 83 54.2
Ca_17365_v3 Cicer arietinum L. HOM05D005801 ORTHO05D008555 3.6e-17 92.0 83 54.2
Dinv36686 Davidia involucrata HOM05D005801 ORTHO05D008555 4.7e-17 91.7 83 51.8
Cfa003179 Carpinus fangiana HOM05D005801 ORTHO05D008555 6.1e-17 91.3 98 46.9
Lj4P387T11 Lonicera japonica HOM05D005801 ORTHO05D008555 6.1e-17 91.3 83 53.0
Oeu053186.1 Olea europaea HOM05D005801 ORTHO05D008555 6.1e-17 91.3 83 54.2
CiPaw.04G157900 Carya illinoinensis HOM05D005801 ORTHO05D008555 8.0e-17 90.9 83 51.8
COL.COLO4_34743 Corchorus olitorius HOM05D005801 ORTHO05D008555 8.0e-17 90.9 77 55.8
Sopen05g014540 Solanum pennellii HOM05D005801 ORTHO05D008555 8.0e-17 90.9 83 51.8
TWI63G0976 Tripterygium wilfordii HOM05D005801 ORTHO05D008555 8.0e-17 90.9 70 61.4
FvH4_1g06150 Fragaria vesca HOM05D005801 ORTHO05D008555 1.0e-16 90.5 83 53.0
FAN19G1715 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.0e-16 90.5 83 53.0
FAN23G0343 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.0e-16 90.5 83 53.0
FAN26G1273 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.0e-16 90.5 83 53.0
RcHm_v2.0_Chr2g0091911 Rosa chinensis HOM05D005801 ORTHO05D008555 1.0e-16 90.5 73 57.5
Sc18g0001500 Simmondsia chinensis HOM05D005801 ORTHO05D008555 1.0e-16 90.5 73 57.5
DCAR_028663 Daucus carota HOM05D005801 ORTHO05D008555 1.4e-16 90.1 77 54.5
Solyc05g017990.4 Solanum lycopersicum HOM05D005801 ORTHO05D008555 1.4e-16 90.1 83 51.8
PGSC0003DMG400038162 Solanum tuberosum HOM05D005801 ORTHO05D008555 1.4e-16 90.1 83 51.8
Eucgr.C00997 Eucalyptus grandis HOM05D005801 ORTHO05D008555 2.3e-16 89.4 83 53.0
FAN28G2516 Fragaria x ananassa HOM05D005801 ORTHO05D008555 2.3e-16 89.4 83 51.8
PSO063G7511 Papaver somniferum HOM05D005801 ORTHO05D008555 2.3e-16 89.4 73 57.5
PSO832G4312 Papaver somniferum HOM05D005801 ORTHO05D008555 2.3e-16 89.4 73 57.5
Aa31LG8G16820 Aethionema arabicum HOM05D005801 ORTHO05D008555 3.0e-16 89.0 85 52.9
Aqoxy7G01401 Aquilegia oxysepala HOM05D005801 ORTHO05D008555 3.9e-16 88.6 83 48.2
Cc06_g10480 Coffea canephora HOM05D005801 ORTHO05D008555 3.9e-16 88.6 79 50.6
Manes.16G108700 Manihot esculenta HOM05D005801 ORTHO05D008555 3.9e-16 88.6 83 50.6
Potri.018G087800 Populus trichocarpa HOM05D005801 ORTHO05D008555 6.7e-16 87.8 83 49.4
Sabra18G0076100 Salix brachista HOM05D005801 ORTHO05D008555 6.7e-16 87.8 83 49.4
CDE04G1187 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 8.8e-16 87.4 83 49.4
Lsat_1_v5_gn_5_144900 Lactuca sativa HOM05D005801 ORTHO05D008555 8.8e-16 87.4 73 53.4
CAN.G370.29 Capsicum annuum HOM05D005801 ORTHO05D008555 2.0e-15 86.3 83 49.4
Migut.K00541 Erythranthe guttata HOM05D005801 ORTHO05D008555 2.6e-15 85.9 73 52.1
Glyma.08G033500 Glycine max HOM05D005801 ORTHO05D008555 2.6e-15 85.9 83 51.8
ATR0681G166 Amborella trichopoda HOM05D005801 ORTHO05D008555 3.3e-15 85.5 83 47.0
HanXRQChr12g0378121 Helianthus annuus HOM05D005801 ORTHO05D008555 3.3e-15 85.5 87 44.8
CsaV3_1G039790 Cucumis sativus L. HOM05D005801 ORTHO05D008555 4.4e-15 85.1 70 55.7
FAN19G0317 Fragaria x ananassa HOM05D005801 ORTHO05D008555 5.7e-15 84.7 83 49.4
EL10Ac8g18377 Beta vulgaris HOM05D005801 ORTHO05D008555 9.7e-15 84.0 77 51.9
MELO3C015412.2 Cucumis melo HOM05D005801 ORTHO05D008555 9.7e-15 84.0 70 54.3
HPP92_009088 Vanilla planifolia HOM05D005801 ORTHO05D008555 2.2e-14 82.8 87 50.6
BcaC01g01198 Brassica carinata HOM05D041247 ORTHO05D016715 2.8e-14 82.4 78 61.5
BcaB01g00402 Brassica carinata HOM05D041247 ORTHO05D016715 3.7e-14 82.0 78 61.5
ECA234G2262 Erigeron canadensis HOM05D005801 ORTHO05D008555 4.8e-14 81.6 74 54.1
unitig_46.g18397 Utricularia gibba HOM05D005801 ORTHO05D008555 6.3e-14 81.3 83 44.6
Ciclev10007826m.g Citrus clementina HOM05D005801 ORTHO05D008555 8.2e-14 80.9 83 48.2
Sed0027809 Sechium edule HOM05D005801 ORTHO05D008555 8.2e-14 80.9 70 52.9
SGA_v2.0_scaffold129G34141 Striga asiatica HOM05D005801 ORTHO05D008555 1.1e-13 80.5 74 50.0
FAN26G1315 Fragaria x ananassa HOM05D005801 ORTHO05D008555 3.1e-13 79.0 83 49.4
SHI02689 Sapria himalayana HOM05D005801 ORTHO05D008555 1.2e-12 77.0 83 42.2
Zm00001eb371210 Zea mays HOM05D005801 ORTHO05D008555 4.5e-12 75.1 73 47.9
BolC9t56715H Brassica oleracea HOM05D013368 ORTHO05D024584 1.7e-11 73.2 87 52.9
CAN.G775.15 Capsicum annuum HOM05D005801 ORTHO05D008555 3.8e-11 72.0 66 50.0
HanXRQChr10g0318931 Helianthus annuus HOM05D005801 ORTHO05D008555 8.5e-11 70.9 63 52.4
HanXRQChr10g0318941 Helianthus annuus HOM05D005801 ORTHO05D008555 8.5e-11 70.9 63 52.4
HanXRQChr14g0438761 Helianthus annuus HOM05D005801 ORTHO05D008555 8.5e-11 70.9 63 52.4
BcaNung00771 Brassica carinata HOM05D013368 ORTHO05D031982 1.2e-09 67.0 42 81.0
BolC7t43482H Brassica oleracea HOM05D013368 ORTHO05D031982 1.2e-09 67.0 42 81.0
C03p74890 Brassica napus HOM05D013368 ORTHO05D031982 1.6e-09 66.6 42 78.6
Cpa.g.sc40.94 Carica papaya HOM05D005801 ORTHO05D008555 5.2e-08 61.6 64 45.3
Lalb_Chr09g0331551 Lupinus albus HOM05D005801 ORTHO05D008555 6.7e-08 61.2 44 61.4
CAN.G1277.2 Capsicum annuum HOM05D005801 ORTHO05D008555 1.5e-07 60.1 56 50.0
BcaC01g03242 Brassica carinata HOM05D013368 ORTHO05D091529 3.3e-07 58.9 40 75.0


User provided reference genes

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