Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19902 Brassica carinata HOM05D006268 ORTHO05D008118 3.1e-62 241.5 112 100.0
BolC9t57859H Brassica oleracea HOM05D006268 ORTHO05D008118 2.2e-28 129.0 61 96.7
A02p07860 Brassica napus HOM05D006268 ORTHO05D008118 7.0e-22 107.5 57 87.7
BraA02t05859Z Brassica rapa HOM05D006268 ORTHO05D008118 7.0e-22 107.5 57 87.7
Thhalv10014126m.g Eutrema salsugineum HOM05D006268 ORTHO05D008118 1.2e-21 106.7 57 86.0
BcaB05g22409 Brassica carinata HOM05D006268 ORTHO05D008118 5.9e-21 104.4 57 86.0
Carub.0008s1876 Capsella rubella HOM05D006268 ORTHO05D008118 7.7e-21 104.0 58 82.8
Sp6g19880 Schrenkiella parvula HOM05D006268 ORTHO05D008118 7.7e-21 104.0 57 84.2
C02p13500 Brassica napus HOM05D006268 ORTHO05D008118 1.3e-20 103.2 57 84.2
BolC2t07462H Brassica oleracea HOM05D006268 ORTHO05D008118 1.3e-20 103.2 57 84.2
BcaC03g14111 Brassica carinata HOM05D006268 ORTHO05D008118 2.2e-20 102.4 57 84.2
BcaB05g22411 Brassica carinata HOM05D006268 ORTHO05D008118 8.5e-20 100.5 57 84.2
AL8G34320 Arabidopsis lyrata HOM05D006268 ORTHO05D008118 1.5e-19 99.8 58 81.0
CARHR272020 Cardamine hirsuta HOM05D006268 ORTHO05D008118 5.5e-19 97.8 70 71.4
AT5G58220 Arabidopsis thaliana HOM05D006268 ORTHO05D008118 1.4e-17 93.2 58 75.9
THA.LOC104799599 Tarenaya hassleriana HOM05D006268 ORTHO05D008118 1.4e-17 93.2 57 73.7
Atru.BG.53.p Acer truncatum HOM05D006268 ORTHO05D008118 4.4e-16 88.2 57 70.2
Rhsim01G0145800 Rhododendron simsii HOM05D006268 ORTHO05D008118 9.7e-16 87.0 57 70.2
Eucgr.D01130 Eucalyptus grandis HOM05D006268 ORTHO05D008118 1.7e-15 86.3 57 63.2
Aa31LG11G10 Aethionema arabicum HOM05D006268 ORTHO05D008118 4.8e-15 84.7 57 71.9
Ah.06g189690 Amaranthus hybridus HOM05D006268 ORTHO05D008118 8.2e-15 84.0 60 60.0
Nitab4.5_0001209g0060 Nicotiana tabacum HOM05D006268 ORTHO05D008118 1.4e-14 83.2 57 66.7
Nitab4.5_0001476g0040 Nicotiana tabacum HOM05D006268 ORTHO05D008118 1.4e-14 83.2 57 66.7
vmacro21105 Vaccinium macrocarpon HOM05D006268 ORTHO05D008118 1.4e-14 83.2 57 66.7
PGR083G0810 Punica granatum HOM05D006268 ORTHO05D008118 3.1e-14 82.0 57 59.6
CAN.G1551.1 Capsicum annuum HOM05D006268 ORTHO05D008118 4.1e-14 81.6 57 63.2
Duzib128G0100 Durio zibethinus HOM05D006268 ORTHO05D008118 5.3e-14 81.3 60 60.0
AUR62023342 Chenopodium quinoa HOM05D006268 ORTHO05D008118 7.0e-14 80.9 60 58.3
MELO3C006233.2 Cucumis melo HOM05D006268 ORTHO05D008118 7.0e-14 80.9 57 63.2
CsaV3_3G010120 Cucumis sativus L. HOM05D006268 ORTHO05D008118 7.0e-14 80.9 57 63.2
PGSC0003DMG400001820 Solanum tuberosum HOM05D006268 ORTHO05D008118 7.0e-14 80.9 57 64.9
CSS0005578 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 9.1e-14 80.5 57 64.9
CSS0033423 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 9.1e-14 80.5 57 64.9
AUR62013813 Chenopodium quinoa HOM05D006268 ORTHO05D008118 9.1e-14 80.5 60 58.3
COL.COLO4_19510 Corchorus olitorius HOM05D006268 ORTHO05D006513 9.1e-14 80.5 57 61.4
Actinidia33290 Actinidia chinensis HOM05D006268 ORTHO05D008118 1.2e-13 80.1 57 64.9
Solyc01g080940.3 Solanum lycopersicum HOM05D006268 ORTHO05D008118 1.2e-13 80.1 57 64.9
CANSAT54G1338 Cannabis sativa HOM05D006268 ORTHO05D008118 1.6e-13 79.7 57 57.9
SGA_v2.0_scaffold95G28736 Striga asiatica HOM05D006268 ORTHO05D008118 1.6e-13 79.7 56 64.3
ClCG05G002670 Citrullus lanatus HOM05D006268 ORTHO05D008118 2.0e-13 79.3 57 61.4
HanXRQChr04g0123661 Helianthus annuus HOM05D006268 ORTHO05D008118 2.0e-13 79.3 57 64.9
Sed0013667 Sechium edule HOM05D006268 ORTHO05D008118 2.0e-13 79.3 60 58.3
GSVIVG01016051001 Vitis vinifera HOM05D006268 ORTHO05D008118 2.0e-13 79.3 57 59.6
Sopen01g032530 Solanum pennellii HOM05D006268 ORTHO05D008118 3.5e-13 78.6 57 63.2
QL04p024264 Quercus lobata HOM05D006268 ORTHO05D008118 4.5e-13 78.2 57 56.1
Ciclev10021110m.g Citrus clementina HOM05D006268 ORTHO05D008118 1.0e-12 77.0 57 57.9
FAN03G0807 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.0e-12 77.0 57 57.9
FAN06G0712 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.0e-12 77.0 57 57.9
Lalb_Chr07g0194551 Lupinus albus HOM05D006268 ORTHO05D008118 1.0e-12 77.0 57 59.6
RcHm_v2.0_Chr1g0341291 Rosa chinensis HOM05D006268 ORTHO05D008118 1.0e-12 77.0 57 57.9
Gohir.A06G169600 Gossypium hirsutum HOM05D006268 ORTHO05D008118 1.3e-12 76.6 60 56.7
Gorai.N008000 Gossypium raimondii HOM05D006268 ORTHO05D008118 1.3e-12 76.6 60 56.7
Lsat_1_v5_gn_7_10860 Lactuca sativa HOM05D006268 ORTHO05D008118 1.3e-12 76.6 60 58.3
TWI59G0917 Tripterygium wilfordii HOM05D006268 ORTHO05D008118 1.3e-12 76.6 57 56.1
Zm00001eb392560 Zea mays HOM05D006268 ORTHO05D008118 1.7e-12 76.3 59 55.9
MSTRG.4977 Avicennia marina HOM05D006268 ORTHO05D008118 2.2e-12 75.9 57 61.4
MD00G1098400 Malus domestica HOM05D006268 ORTHO05D008118 2.2e-12 75.9 57 56.1
Medtr8g010550 Medicago truncatula HOM05D006268 ORTHO05D008118 2.2e-12 75.9 57 56.1
Thecc.03G001300 Theobroma cacao HOM05D006268 ORTHO05D008118 2.2e-12 75.9 57 57.9
VMungo0331G0592 Vigna mungo HOM05D006268 ORTHO05D008118 2.2e-12 75.9 57 56.1
Lj7C555T10 Lonicera japonica HOM05D006268 ORTHO05D008118 2.9e-12 75.5 57 59.6
EL10Ac1g00692 Beta vulgaris HOM05D006268 ORTHO05D008118 3.8e-12 75.1 60 55.0
Cfa010996 Carpinus fangiana HOM05D006268 ORTHO05D008118 3.8e-12 75.1 57 57.9
Haze_02942 Corylus avellana HOM05D006268 ORTHO05D008118 3.8e-12 75.1 57 57.9
FvH4_7g08020 Fragaria vesca HOM05D006268 ORTHO05D008118 3.8e-12 75.1 57 56.1
FAN01G0355 Fragaria x ananassa HOM05D006268 ORTHO05D008118 3.8e-12 75.1 57 56.1
Phvul.010G033866 Phaseolus vulgaris HOM05D006268 ORTHO05D008118 3.8e-12 75.1 57 56.1
Sc26g0001910 Simmondsia chinensis HOM05D006268 ORTHO05D008118 3.8e-12 75.1 57 57.9
Ca_23170_v3 Cicer arietinum L. HOM05D006268 ORTHO05D008118 5.0e-12 74.7 57 57.9
DCAR_029548 Daucus carota HOM05D006268 ORTHO05D008118 5.0e-12 74.7 57 59.6
Migut.N01815 Erythranthe guttata HOM05D006268 ORTHO05D008118 5.0e-12 74.7 57 63.2
Os03g0390700 Oryza sativa ssp. japonica HOM05D006268 ORTHO05D008118 5.0e-12 74.7 57 54.4
Psat4g207400 Pisum sativum HOM05D006268 ORTHO05D008118 5.0e-12 74.7 57 57.9
TPR.G9770 Trifolium pratense HOM05D006268 ORTHO05D008118 5.0e-12 74.7 57 56.1
Glyma.16G080700 Glycine max HOM05D006268 ORTHO05D008118 6.5e-12 74.3 57 56.1
Potri.002G238300 Populus trichocarpa HOM05D006268 ORTHO05D008118 8.5e-12 73.9 57 57.9
Sc26g0001930 Simmondsia chinensis HOM05D006268 ORTHO05D008118 8.5e-12 73.9 57 57.9
TAR375G0229 Trochodendron aralioides HOM05D006268 ORTHO05D008118 1.1e-11 73.6 57 57.9
Glyma.03G093200 Glycine max HOM05D006268 ORTHO05D008118 1.5e-11 73.2 57 56.1
Sabra02G0181600 Salix brachista HOM05D006268 ORTHO05D008118 1.5e-11 73.2 57 56.1
arahy.Tifrunner.gnm1.ann1.EHLP6C Arachis hypogaea HOM05D006268 ORTHO05D008118 1.9e-11 72.8 57 57.9
arahy.Tifrunner.gnm1.ann1.V3PJPX Arachis hypogaea HOM05D006268 ORTHO05D008118 1.9e-11 72.8 57 57.9
Nn1g00551 Nelumbo nucifera HOM05D006268 ORTHO05D008118 1.9e-11 72.8 57 57.9
FAN10G2079 Fragaria x ananassa HOM05D006268 ORTHO05D008118 2.5e-11 72.4 57 56.1
PSO063G1446 Papaver somniferum HOM05D006268 ORTHO05D008118 2.5e-11 72.4 57 57.9
Prupe.2G109200 Prunus persica HOM05D006268 ORTHO05D008118 2.5e-11 72.4 57 56.1
Cc02_g26120 Coffea canephora HOM05D006268 ORTHO05D008118 3.2e-11 72.0 57 59.6
Lj3g0019214 Lotus japonicus HOM05D006268 ORTHO05D008118 3.2e-11 72.0 57 56.1
ECA236G2174 Erigeron canadensis HOM05D006268 ORTHO05D008118 4.2e-11 71.6 55 61.8
SalBow4G0743 Salvia bowleyana HOM05D006268 ORTHO05D008118 4.2e-11 71.6 57 56.1
Aqoxy3G02409 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 7.2e-11 70.9 57 54.4
Aqoxy3G02437 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 7.2e-11 70.9 57 54.4
PSO782G1498 Papaver somniferum HOM05D006268 ORTHO05D008118 9.4e-11 70.5 57 56.1
unitig_22.g5778 Utricularia gibba HOM05D006268 ORTHO05D008118 9.4e-11 70.5 57 56.1
Hund26937 Selenicereus undatus HOM05D006268 ORTHO05D008118 1.6e-10 69.7 60 50.0
CiPaw.13G019100 Carya illinoinensis HOM05D006268 ORTHO05D008118 2.7e-10 68.9 57 54.4
HPP92_028001 Vanilla planifolia HOM05D006268 ORTHO05D008118 3.6e-10 68.6 57 49.1
C09p50070 Brassica napus HOM05D006268 ORTHO05D008118 8.0e-10 67.4 33 93.9
ATR0049G059 Amborella trichopoda HOM05D006268 ORTHO05D008118 1.0e-09 67.0 57 52.6
SHI28983 Sapria himalayana HOM05D006268 ORTHO05D008118 4.0e-09 65.1 57 52.6
Pp3c4_10360 Physcomitrium patens HOM05D006268 ORTHO05D008118 7.5e-08 60.8 62 48.4
SEGI_16160 Sequoiadendron giganteum HOM05D006268 ORTHO05D008118 1.4e-06 56.6 66 42.4


User provided reference genes

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