Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g17502 Brassica carinata HOM05D005111 ORTHO05D039329 2.8e-32 141.4 71 100.0
THA.LOC104805409 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 3.0e-18 94.7 57 77.2
Thhalv10005667m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 5.1e-18 94.0 57 82.5
Sp2g17070 Schrenkiella parvula HOM05D005111 ORTHO05D006650 6.6e-18 93.6 52 84.6
Cpa.g.sc286.5 Carica papaya HOM05D005111 ORTHO05D006650 1.5e-17 92.4 58 81.0
Thhalv10027951m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 1.9e-17 92.0 57 77.2
Aa31LG2G4740 Aethionema arabicum HOM05D005111 ORTHO05D006650 2.5e-17 91.7 57 78.9
BcaC06g30932 Brassica carinata HOM05D005111 ORTHO05D006650 2.5e-17 91.7 57 77.2
Hma1.2p1_0697F.1_g204930 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 4.3e-17 90.9 57 80.7
HanXRQChr15g0474461 Helianthus annuus HOM05D005111 ORTHO05D006650 7.3e-17 90.1 57 75.4
Cfa007459 Carpinus fangiana HOM05D005111 ORTHO05D006650 1.6e-16 89.0 57 78.9
CiPaw.04G023100 Carya illinoinensis HOM05D005111 ORTHO05D006650 1.6e-16 89.0 57 78.9
MD17G1038600 Malus domestica HOM05D005111 ORTHO05D006650 1.6e-16 89.0 57 80.7
Prupe.3G280400 Prunus persica HOM05D005111 ORTHO05D006650 1.6e-16 89.0 57 80.7
EL10Ac2g03364 Beta vulgaris HOM05D005111 ORTHO05D006650 2.1e-16 88.6 62 67.7
ClCG09G018710 Citrullus lanatus HOM05D005111 ORTHO05D006650 2.1e-16 88.6 57 78.9
ClCG09G018770 Citrullus lanatus HOM05D005111 ORTHO05D006650 2.1e-16 88.6 57 78.9
MELO3C021519.2 Cucumis melo HOM05D005111 ORTHO05D006650 2.1e-16 88.6 57 78.9
CsaV3_5G037360 Cucumis sativus L. HOM05D005111 ORTHO05D006650 2.1e-16 88.6 57 78.9
MD09G1037200 Malus domestica HOM05D005111 ORTHO05D006650 2.1e-16 88.6 61 77.0
Sed0001363 Sechium edule HOM05D005111 ORTHO05D006650 2.1e-16 88.6 57 78.9
AL7G49820 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 2.8e-16 88.2 57 77.2
AT5G40190 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 2.8e-16 88.2 57 77.2
Carub.0007s3546 Capsella rubella HOM05D005111 ORTHO05D006650 2.8e-16 88.2 57 77.2
CiPaw.03G035600 Carya illinoinensis HOM05D005111 ORTHO05D006650 2.8e-16 88.2 57 77.2
THA.LOC104823919 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 2.8e-16 88.2 57 77.2
AUR62032092 Chenopodium quinoa HOM05D005111 ORTHO05D006650 3.6e-16 87.8 52 78.8
Dinv33518 Davidia involucrata HOM05D005111 ORTHO05D006650 3.6e-16 87.8 57 77.2
Lj7P412T18 Lonicera japonica HOM05D005111 ORTHO05D006650 3.6e-16 87.8 51 80.4
RcHm_v2.0_Chr2g0170641 Rosa chinensis HOM05D005111 ORTHO05D006650 3.6e-16 87.8 57 78.9
CARHR261950 Cardamine hirsuta HOM05D005111 ORTHO05D006650 4.7e-16 87.4 51 80.4
Dinv35035 Davidia involucrata HOM05D005111 ORTHO05D006650 4.7e-16 87.4 57 75.4
Lsat_1_v5_gn_8_69941 Lactuca sativa HOM05D005111 ORTHO05D006650 4.7e-16 87.4 57 77.2
Ah.16g106920 Amaranthus hybridus HOM05D005111 ORTHO05D006650 6.2e-16 87.0 58 69.0
BcaC06g30930 Brassica carinata HOM05D005111 ORTHO05D006650 6.2e-16 87.0 52 73.1
BcaC06g33750 Brassica carinata HOM05D005111 ORTHO05D006650 6.2e-16 87.0 52 73.1
A06p40670 Brassica napus HOM05D005111 ORTHO05D006650 6.2e-16 87.0 52 73.1
C07p37330 Brassica napus HOM05D005111 ORTHO05D006650 6.2e-16 87.0 52 73.1
BolC7t44243H Brassica oleracea HOM05D005111 ORTHO05D006650 6.2e-16 87.0 52 73.1
BraA06t26987Z Brassica rapa HOM05D005111 ORTHO05D006650 6.2e-16 87.0 52 73.1
AL5G17640 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 8.1e-16 86.7 57 75.4
Rhsim08G0056700 Rhododendron simsii HOM05D005111 ORTHO05D006650 8.1e-16 86.7 57 75.4
Sed0025070 Sechium edule HOM05D005111 ORTHO05D006650 8.1e-16 86.7 53 75.5
TWI36G0044 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 8.1e-16 86.7 57 77.2
CSS0013590 Camellia sinensis var. sinensis HOM05D005111 ORTHO05D006650 1.1e-15 86.3 57 75.4
ECA246G3776 Erigeron canadensis HOM05D005111 ORTHO05D006650 1.1e-15 86.3 52 76.9
Ciclev10016872m.g Citrus clementina HOM05D005111 ORTHO05D006650 1.4e-15 85.9 57 75.4
COL.COLO4_32007 Corchorus olitorius HOM05D005111 ORTHO05D006650 1.4e-15 85.9 57 78.9
FAN02G1641 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.4e-15 85.9 57 75.4
FAN05G4920 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.4e-15 85.9 57 75.4
FAN09G2278 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.4e-15 85.9 57 75.4
Nn3g16957 Nelumbo nucifera HOM05D005111 ORTHO05D006650 1.4e-15 85.9 57 77.2
Actinidia28460 Actinidia chinensis HOM05D005111 ORTHO05D006650 1.8e-15 85.5 57 75.4
Actinidia36066 Actinidia chinensis HOM05D005111 ORTHO05D006650 1.8e-15 85.5 57 75.4
C02p54640 Brassica napus HOM05D005111 ORTHO05D039329 1.8e-15 85.5 71 67.6
CANSAT64G0323 Cannabis sativa HOM05D005111 ORTHO05D006650 1.8e-15 85.5 57 77.2
Manes.17G124400 Manihot esculenta HOM05D005111 ORTHO05D006650 1.8e-15 85.5 57 73.7
GSVIVG01032518001 Vitis vinifera HOM05D005111 ORTHO05D006650 1.8e-15 85.5 57 77.2
Manes.15G180000 Manihot esculenta HOM05D005111 ORTHO05D006650 2.3e-15 85.1 57 75.4
Atru.chr6.2171 Acer truncatum HOM05D005111 ORTHO05D006650 3.1e-15 84.7 57 75.4
Haze_14637 Corylus avellana HOM05D005111 ORTHO05D006650 3.1e-15 84.7 50 80.0
Duzib147G1596 Durio zibethinus HOM05D005111 ORTHO05D006650 3.1e-15 84.7 57 77.2
TWI56G1475 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 3.1e-15 84.7 57 73.7
PGR083G2413 Punica granatum HOM05D005111 ORTHO05D006650 4.0e-15 84.3 57 73.7
arahy.Tifrunner.gnm1.ann1.68QD6J Arachis hypogaea HOM05D005111 ORTHO05D006650 5.2e-15 84.0 50 78.0
QL02p077635 Quercus lobata HOM05D005111 ORTHO05D006650 5.2e-15 84.0 56 73.2
Thecc.04G004900 Theobroma cacao HOM05D005111 ORTHO05D006650 5.2e-15 84.0 57 75.4
Gohir.A10G101300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 8.9e-15 83.2 57 75.4
Gohir.D10G087701 Gossypium hirsutum HOM05D005111 ORTHO05D006650 8.9e-15 83.2 57 75.4
Gorai.011G096000 Gossypium raimondii HOM05D005111 ORTHO05D006650 8.9e-15 83.2 57 75.4
TAR622G0537 Trochodendron aralioides HOM05D005111 ORTHO05D006650 8.9e-15 83.2 53 71.7
Nn4g22869 Nelumbo nucifera HOM05D005111 ORTHO05D006650 1.2e-14 82.8 51 74.5
Duzib264G0177 Durio zibethinus HOM05D005111 ORTHO05D006650 1.5e-14 82.4 57 75.4
Glyma.19G011900 Glycine max HOM05D005111 ORTHO05D006650 1.5e-14 82.4 57 70.2
Glyma.19G012000 Glycine max HOM05D005111 ORTHO05D006650 1.5e-14 82.4 53 69.8
Sp7g01780 Schrenkiella parvula HOM05D005111 ORTHO05D006650 1.5e-14 82.4 46 82.6
AT3G28140 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 2.0e-14 82.0 57 73.7
CDE10G0493 Ceratophyllum demersum HOM05D005111 ORTHO05D006650 2.0e-14 82.0 50 74.0
Ca_04214_v3 Cicer arietinum L. HOM05D005111 ORTHO05D006650 2.0e-14 82.0 54 64.8
Migut.H00147 Erythranthe guttata HOM05D005111 ORTHO05D006650 2.0e-14 82.0 54 68.5
Lalb_Chr02g0159721 Lupinus albus HOM05D005111 ORTHO05D006650 2.0e-14 82.0 52 73.1
Potri.017G073800 Populus trichocarpa HOM05D005111 ORTHO05D006650 2.0e-14 82.0 57 73.7
TAR374G1688 Trochodendron aralioides HOM05D005111 ORTHO05D006650 2.0e-14 82.0 53 71.7
Eucgr.J02178 Eucalyptus grandis HOM05D005111 ORTHO05D006650 2.6e-14 81.6 57 71.9
Gorai.006G028500 Gossypium raimondii HOM05D005111 ORTHO05D006650 3.4e-14 81.3 52 75.0
TPR.G2260 Trifolium pratense HOM05D005111 ORTHO05D006650 3.4e-14 81.3 53 67.9
Aqoxy3G03068 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 4.4e-14 80.9 55 69.1
Carub.0005s0666 Capsella rubella HOM05D005111 ORTHO05D006650 4.4e-14 80.9 54 72.2
Gohir.D09G024300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 4.4e-14 80.9 51 76.5
Hma1.2p1_0967F.1_g242385 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 4.4e-14 80.9 57 71.9
Glyma.13G070800 Glycine max HOM05D005111 ORTHO05D006650 5.8e-14 80.5 57 66.7
Nitab4.5_0000844g0360 Nicotiana tabacum HOM05D005111 ORTHO05D006650 5.8e-14 80.5 57 71.9
Aqoxy3G00932 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 7.5e-14 80.1 50 72.0
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 7.5e-14 80.1 49 73.5
FvH4_6g50340 Fragaria vesca HOM05D005111 ORTHO05D006650 9.9e-14 79.7 49 75.5
FAN14G5899 Fragaria x ananassa HOM05D005111 ORTHO05D006650 9.9e-14 79.7 49 75.5
Nitab4.5_0000632g0170 Nicotiana tabacum HOM05D005111 ORTHO05D006650 9.9e-14 79.7 55 72.7
Peaxi162Scf00036g00163 Petunia axillaris HOM05D005111 ORTHO05D006650 9.9e-14 79.7 55 72.7
SEGI_23218 Sequoiadendron giganteum HOM05D005111 ORTHO05D006650 9.9e-14 79.7 52 67.3
Hma1.2p1_2931F.1_g330500 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 1.3e-13 79.3 57 70.2
Lj2g0005029 Lotus japonicus HOM05D005111 ORTHO05D006650 1.3e-13 79.3 50 70.0
PSO478G1103 Papaver somniferum HOM05D005111 ORTHO05D006650 1.3e-13 79.3 52 73.1
Phvul.004G019200 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 1.3e-13 79.3 57 68.4
VMungo0464G0112 Vigna mungo HOM05D005111 ORTHO05D006650 1.3e-13 79.3 57 68.4
Gohir.D04G053100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.7e-13 79.0 51 72.5
Gorai.012G059600 Gossypium raimondii HOM05D005111 ORTHO05D006650 1.7e-13 79.0 51 72.5
Potri.001G350300 Populus trichocarpa HOM05D005111 ORTHO05D006650 1.7e-13 79.0 51 72.5
Cc07_g02510 Coffea canephora HOM05D005111 ORTHO05D006650 2.2e-13 78.6 55 69.1
Gohir.A05G361100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.2e-13 78.6 51 72.5
CAN.G809.38 Capsicum annuum HOM05D005111 ORTHO05D006650 2.9e-13 78.2 55 70.9
Phvul.004G019100 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 2.9e-13 78.2 57 68.4
Sabra16G0229800 Salix brachista HOM05D005111 ORTHO05D006650 2.9e-13 78.2 50 74.0
DCAR_013972 Daucus carota HOM05D005111 ORTHO05D006650 4.9e-13 77.4 51 68.6
VMungo0464G1864 Vigna mungo HOM05D005111 ORTHO05D006650 4.9e-13 77.4 57 66.7
Psat1g060720 Pisum sativum HOM05D005111 ORTHO05D006650 8.3e-13 76.6 57 61.4
Migut.K01364 Erythranthe guttata HOM05D005111 ORTHO05D006650 1.1e-12 76.3 53 64.2
Oeu047328.1 Olea europaea HOM05D005111 ORTHO05D006650 1.1e-12 76.3 52 65.4
PSO017G5141 Papaver somniferum HOM05D005111 ORTHO05D006650 1.1e-12 76.3 52 71.2
CiPaw.06G158200 Carya illinoinensis HOM05D005111 ORTHO05D006650 1.9e-12 75.5 57 64.9
SalBow1G6258 Salvia bowleyana HOM05D005111 ORTHO05D006650 1.9e-12 75.5 49 67.3
Solyc02g081950.4 Solanum lycopersicum HOM05D005111 ORTHO05D006650 1.9e-12 75.5 55 69.1
Sopen02g026580 Solanum pennellii HOM05D005111 ORTHO05D006650 1.9e-12 75.5 55 69.1
PGSC0003DMG400007321 Solanum tuberosum HOM05D005111 ORTHO05D006650 1.9e-12 75.5 55 69.1
MSTRG.15504 Avicennia marina HOM05D005111 ORTHO05D006650 2.4e-12 75.1 54 64.8
unitig_744.g24353 Utricularia gibba HOM05D005111 ORTHO05D006650 3.2e-12 74.7 54 64.8
Medtr6g007773 Medicago truncatula HOM05D005111 ORTHO05D006650 4.1e-12 74.3 57 61.4
SalBow7G0796 Salvia bowleyana HOM05D005111 ORTHO05D006650 7.1e-12 73.6 54 63.0
Actinidia33968 Actinidia chinensis HOM05D005111 ORTHO05D000390 1.6e-11 72.4 50 66.0
MSTRG.3306 Avicennia marina HOM05D005111 ORTHO05D006650 2.7e-11 71.6 52 63.5
FAN09G1763 Fragaria x ananassa HOM05D005111 ORTHO05D006650 2.7e-11 71.6 46 69.6
Nitab4.5_0000005g0410 Nicotiana tabacum HOM05D005111 ORTHO05D006650 2.7e-11 71.6 51 66.7
Nitab4.5_0000389g0080 Nicotiana tabacum HOM05D005111 ORTHO05D006650 2.7e-11 71.6 51 66.7
BcaC06g33752 Brassica carinata HOM05D005111 ORTHO05D093848 3.5e-11 71.2 38 86.8
SGA_v2.0_scaffold205G41716 Striga asiatica HOM05D005111 ORTHO05D006650 6.0e-11 70.5 50 62.0
Sc20g0002810 Simmondsia chinensis HOM05D005111 ORTHO05D006650 3.9e-10 67.8 42 76.2
SGA_v2.0_scaffold30G12485 Striga asiatica HOM05D005111 ORTHO05D006650 5.1e-10 67.4 50 62.0
A02p35780 Brassica napus HOM05D005111 ORTHO05D006650 1.1e-09 66.2 41 78.0
BraA02t08578Z Brassica rapa HOM05D000028 ORTHO05D000390 1.1e-09 66.2 41 78.0
Os09g0375400 Oryza sativa ssp. japonica HOM05D005111 ORTHO05D006650 1.1e-07 59.7 52 59.6
SMO367G0111 Selaginella moellendorffii HOM05D005111 ORTHO05D006650 8.9e-07 56.6 49 46.9
Zm00001eb098850 Zea mays HOM05D005111 ORTHO05D006650 2.0e-06 55.5 52 55.8


User provided reference genes

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