Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g16904 Brassica carinata HOM05D003302 ORTHO05D003785 4.9e-34 147.1 69 100.0
Duzib084G0162 Durio zibethinus HOM05D003302 ORTHO05D003785 1.3e-15 85.9 53 81.1
Duzib205G0194 Durio zibethinus HOM05D003302 ORTHO05D003785 1.3e-15 85.9 53 81.1
Gohir.A03G002901 Gossypium hirsutum HOM05D003302 ORTHO05D003785 1.3e-15 85.9 53 81.1
Gohir.D03G169466 Gossypium hirsutum HOM05D003302 ORTHO05D003785 1.3e-15 85.9 53 81.1
Thecc.03G235300 Theobroma cacao HOM05D003302 ORTHO05D003785 1.3e-15 85.9 53 81.1
Atru.chr6.1790 Acer truncatum HOM05D003302 ORTHO05D003785 2.3e-15 85.1 53 79.2
Aa31LG9G6000 Aethionema arabicum HOM05D003302 ORTHO05D003785 2.3e-15 85.1 53 79.2
AL8G11350 Arabidopsis lyrata HOM05D003302 ORTHO05D003785 2.3e-15 85.1 53 79.2
AT5G46920 Arabidopsis thaliana HOM05D003302 ORTHO05D003785 2.3e-15 85.1 53 79.2
arahy.Tifrunner.gnm1.ann1.HY98G0 Arachis hypogaea HOM05D003302 ORTHO05D003785 2.3e-15 85.1 53 79.2
arahy.Tifrunner.gnm1.ann1.K481AV Arachis hypogaea HOM05D003302 ORTHO05D003785 2.3e-15 85.1 53 79.2
MSTRG.1965 Avicennia marina HOM05D003302 ORTHO05D003785 2.3e-15 85.1 53 79.2
A06p45460 Brassica napus HOM05D003302 ORTHO05D003785 2.3e-15 85.1 53 79.2
C07p30510 Brassica napus HOM05D003302 ORTHO05D003785 2.3e-15 85.1 53 79.2
BolC7t43592H Brassica oleracea HOM05D003302 ORTHO05D003785 2.3e-15 85.1 53 79.2
BraA06t27414Z Brassica rapa HOM05D003302 ORTHO05D003785 2.3e-15 85.1 53 79.2
CAN.G572.44 Capsicum annuum HOM05D003302 ORTHO05D003785 2.3e-15 85.1 53 79.2
CAN.G572.51 Capsicum annuum HOM05D003302 ORTHO05D003785 2.3e-15 85.1 53 79.2
Cpa.g.sc29.6 Carica papaya HOM05D003302 ORTHO05D003785 2.3e-15 85.1 53 79.2
Cfa012369 Carpinus fangiana HOM05D003302 ORTHO05D003785 2.3e-15 85.1 53 79.2
Haze_08314 Corylus avellana HOM05D003302 ORTHO05D003785 2.3e-15 85.1 53 79.2
Haze_08315 Corylus avellana HOM05D003302 ORTHO05D003785 2.3e-15 85.1 53 79.2
ECA248G2391 Erigeron canadensis HOM05D003302 ORTHO05D003785 2.3e-15 85.1 53 79.2
HanXRQChr16g0522971 Helianthus annuus HOM05D003302 ORTHO05D003785 2.3e-15 85.1 53 79.2
Lsat_1_v5_gn_4_38500 Lactuca sativa HOM05D003302 ORTHO05D003785 2.3e-15 85.1 53 79.2
Lj8P288T36 Lonicera japonica HOM05D003302 ORTHO05D003785 2.3e-15 85.1 53 79.2
Manes.15G171966 Manihot esculenta HOM05D003302 ORTHO05D003785 2.3e-15 85.1 53 79.2
Nitab4.5_0004832g0030 Nicotiana tabacum HOM05D003302 ORTHO05D003785 2.3e-15 85.1 53 79.2
Nitab4.5_0008694g0030 Nicotiana tabacum HOM05D003302 ORTHO05D003785 2.3e-15 85.1 53 79.2
Oeu037876.2 Olea europaea HOM05D003302 ORTHO05D003785 2.3e-15 85.1 53 79.2
Potri.001G147801 Populus trichocarpa HOM05D003302 ORTHO05D003785 2.3e-15 85.1 53 79.2
Prupe.5G048500 Prunus persica HOM05D003302 ORTHO05D003785 2.3e-15 85.1 53 79.2
QL12p007349 Quercus lobata HOM05D003302 ORTHO05D003785 2.3e-15 85.1 53 79.2
Sp2g11710 Schrenkiella parvula HOM05D003302 ORTHO05D003785 2.3e-15 85.1 53 79.2
Solyc08g077385.1 Solanum lycopersicum HOM05D003302 ORTHO05D003785 2.3e-15 85.1 53 79.2
Sopen08g025970 Solanum pennellii HOM05D003302 ORTHO05D003785 2.3e-15 85.1 53 79.2
TWI60G1391 Tripterygium wilfordii HOM05D003302 ORTHO05D003785 2.3e-15 85.1 53 79.2
CiPaw.12G059400 Carya illinoinensis HOM05D003302 ORTHO05D003785 3.9e-15 84.3 53 77.4
Lalb_Chr18g0057931 Lupinus albus HOM05D003302 ORTHO05D003785 3.9e-15 84.3 53 79.2
THA.LOC104798339 Tarenaya hassleriana HOM05D003302 ORTHO05D003785 3.9e-15 84.3 53 77.4
Actinidia03397 Actinidia chinensis HOM05D003302 ORTHO05D003785 5.1e-15 84.0 53 77.4
Aqoxy3G02548 Aquilegia oxysepala HOM05D003302 ORTHO05D003785 5.1e-15 84.0 53 77.4
EL10Ac5g11380 Beta vulgaris HOM05D003302 ORTHO05D003785 5.1e-15 84.0 53 77.4
CANSAT11G1544 Cannabis sativa HOM05D003302 ORTHO05D003785 5.1e-15 84.0 53 77.4
Dinv28907 Davidia involucrata HOM05D003302 ORTHO05D003785 5.1e-15 84.0 53 77.4
FAN04G1622 Fragaria x ananassa HOM05D003302 ORTHO05D003785 5.1e-15 84.0 53 77.4
FAN08G3359 Fragaria x ananassa HOM05D003302 ORTHO05D003785 5.1e-15 84.0 53 77.4
FAN13G0755 Fragaria x ananassa HOM05D003302 ORTHO05D003785 5.1e-15 84.0 53 77.4
FAN18G0007 Fragaria x ananassa HOM05D003302 ORTHO05D003785 5.1e-15 84.0 53 77.4
Nn1g00641 Nelumbo nucifera HOM05D003302 ORTHO05D003785 5.1e-15 84.0 53 77.4
Potri.003G086801 Populus trichocarpa HOM05D003302 ORTHO05D003785 5.1e-15 84.0 53 77.4
PGR142G3064 Punica granatum HOM05D003302 ORTHO05D003785 5.1e-15 84.0 53 77.4
Rhsim04G0067200 Rhododendron simsii HOM05D003302 ORTHO05D003785 5.1e-15 84.0 53 77.4
RcHm_v2.0_Chr7g0208021 Rosa chinensis HOM05D003302 ORTHO05D003785 5.1e-15 84.0 53 77.4
TAR375G0955 Trochodendron aralioides HOM05D003302 ORTHO05D003785 5.1e-15 84.0 53 77.4
unitig_62.g23447 Utricularia gibba HOM05D003302 ORTHO05D003785 5.1e-15 84.0 53 77.4
vmacro00359 Vaccinium macrocarpon HOM05D003302 ORTHO05D003785 5.1e-15 84.0 53 77.4
CAN.G289.41 Capsicum annuum HOM05D003302 ORTHO05D003785 6.6e-15 83.6 53 77.4
Glyma.09G023300 Glycine max HOM05D003302 ORTHO05D003785 6.6e-15 83.6 53 77.4
Glyma.15G129400 Glycine max HOM05D003302 ORTHO05D003785 6.6e-15 83.6 53 77.4
Phvul.006G128900 Phaseolus vulgaris HOM05D003302 ORTHO05D003785 6.6e-15 83.6 53 77.4
PGSC0003DMG400001864 Solanum tuberosum HOM05D003302 ORTHO05D003785 6.6e-15 83.6 53 77.4
VMungo0540G1460 Vigna mungo HOM05D003302 ORTHO05D003785 6.6e-15 83.6 53 77.4
Ca_00809_v3 Cicer arietinum L. HOM05D003302 ORTHO05D003785 8.7e-15 83.2 52 80.8
DCAR_005601 Daucus carota HOM05D003302 ORTHO05D003785 8.7e-15 83.2 53 77.4
Sed0026531 Sechium edule HOM05D003302 ORTHO05D003785 8.7e-15 83.2 53 77.4
GSVIVG01023127001 Vitis vinifera HOM05D003302 ORTHO05D003785 8.7e-15 83.2 53 77.4
ATR0827G173 Amborella trichopoda HOM05D003302 ORTHO05D003785 1.1e-14 82.8 53 75.5
AUR62029877 Chenopodium quinoa HOM05D003302 ORTHO05D003785 1.1e-14 82.8 53 75.5
COL.COLO4_17129 Corchorus olitorius HOM05D003302 ORTHO05D003785 1.1e-14 82.8 53 77.4
HanXRQChr07g0188531 Helianthus annuus HOM05D003302 ORTHO05D003785 1.1e-14 82.8 53 77.4
Sc25g0000590 Simmondsia chinensis HOM05D003302 ORTHO05D003785 1.1e-14 82.8 53 75.5
HPP92_007162 Vanilla planifolia HOM05D003302 ORTHO05D003785 1.1e-14 82.8 53 75.5
FvH4_5g21000 Fragaria vesca HOM05D003302 ORTHO05D003785 1.9e-14 82.0 53 75.5
Os10g0567500 Oryza sativa ssp. japonica HOM05D003302 ORTHO05D003785 1.9e-14 82.0 53 77.4
Sabra03G0056500 Salix brachista HOM05D003302 ORTHO05D003785 1.9e-14 82.0 53 75.5
ClCG09G012410 Citrullus lanatus HOM05D003302 ORTHO05D003785 2.5e-14 81.6 53 75.5
Zm00001eb004560 Zea mays HOM05D003302 ORTHO05D003785 2.5e-14 81.6 53 75.5
Zm00001eb210180 Zea mays HOM05D003302 ORTHO05D003785 2.5e-14 81.6 53 75.5
AUR62025829 Chenopodium quinoa HOM05D003302 ORTHO05D003785 3.3e-14 81.3 53 73.6
Psat1g168040 Pisum sativum HOM05D003302 ORTHO05D003785 4.3e-14 80.9 52 76.9
SHI07509 Sapria himalayana HOM05D003302 ORTHO05D003785 4.3e-14 80.9 53 75.5
TPR.G26325 Trifolium pratense HOM05D003302 ORTHO05D003785 4.3e-14 80.9 52 76.9
MELO3C003368.2 Cucumis melo HOM05D003302 ORTHO05D003785 9.6e-14 79.7 53 73.6
CsaV3_3G049580 Cucumis sativus L. HOM05D003302 ORTHO05D003785 9.6e-14 79.7 53 73.6
SEGI_25417 Sequoiadendron giganteum HOM05D003302 ORTHO05D003785 1.1e-12 76.3 53 67.9
PSO782G0278 Papaver somniferum HOM05D003302 ORTHO05D003785 9.0e-12 73.2 53 69.8
PSO063G6934 Papaver somniferum HOM05D003302 ORTHO05D003785 7.6e-11 70.1 53 67.9
ATR0064G047 Amborella trichopoda HOM05D003302 ORTHO05D003785 1.7e-10 68.9 53 56.6
PGSC0003DMG400018655 Solanum tuberosum HOM05D003302 ORTHO05D003785 3.8e-10 67.8 64 50.0
Solyc01g112025.1 Solanum lycopersicum HOM05D003302 ORTHO05D003785 4.9e-10 67.4 64 48.4
Sopen01g054090 Solanum pennellii HOM05D003302 ORTHO05D003785 4.9e-10 67.4 64 48.4
TAR629G3501 Trochodendron aralioides HOM05D003302 ORTHO05D003785 4.9e-10 67.4 53 56.6
CDE11G0149 Ceratophyllum demersum HOM05D003302 ORTHO05D003785 6.4e-10 67.0 53 54.7
Dinv30741 Davidia involucrata HOM05D003302 ORTHO05D003785 6.4e-10 67.0 53 58.5
Potri.004G132450 Populus trichocarpa HOM05D003302 ORTHO05D003785 6.4e-10 67.0 51 58.8
Sabra04G0085500 Salix brachista HOM05D003302 ORTHO05D003785 6.4e-10 67.0 51 58.8
FvH4_3g05620 Fragaria vesca HOM05D003302 ORTHO05D003785 8.4e-10 66.6 51 58.8
FAN11G3285 Fragaria x ananassa HOM05D003302 ORTHO05D003785 8.4e-10 66.6 51 58.8
FAN21G1953 Fragaria x ananassa HOM05D003302 ORTHO05D003785 8.4e-10 66.6 51 58.8
Hma1.2p1_0053F.1_g030960 Hydrangea macrophylla HOM05D003302 ORTHO05D003785 8.4e-10 66.6 53 56.6
Nn3g20766 Nelumbo nucifera HOM05D003302 ORTHO05D003785 1.4e-09 65.9 53 54.7
RcHm_v2.0_Chr5g0014061 Rosa chinensis HOM05D003302 ORTHO05D003785 1.4e-09 65.9 51 56.9
ATR1091G061 Amborella trichopoda HOM05D003302 ORTHO05D003785 3.2e-09 64.7 53 54.7
Lj1P1187T27 Lonicera japonica HOM05D003302 ORTHO05D003785 3.2e-09 64.7 51 56.9
Nitab4.5_0000165g0160 Nicotiana tabacum HOM05D003302 ORTHO05D003785 3.2e-09 64.7 51 52.9
Nitab4.5_0011942g0010 Nicotiana tabacum HOM05D003302 ORTHO05D003785 3.2e-09 64.7 51 52.9
Cpa.g.sc166.10 Carica papaya HOM05D003302 ORTHO05D003785 5.4e-09 63.9 51 56.9
SEGI_34960 Sequoiadendron giganteum HOM05D003302 ORTHO05D003785 5.4e-09 63.9 53 54.7
Sc05g0006220 Simmondsia chinensis HOM05D003302 ORTHO05D003785 5.4e-09 63.9 65 47.7
arahy.Tifrunner.gnm1.ann1.G4BUBZ Arachis hypogaea HOM05D003302 ORTHO05D003785 7.1e-09 63.5 51 54.9
arahy.Tifrunner.gnm1.ann1.JNH5N4 Arachis hypogaea HOM05D003302 ORTHO05D003785 7.1e-09 63.5 51 54.9
TWI38G0102 Tripterygium wilfordii HOM05D003302 ORTHO05D003785 9.3e-09 63.2 53 52.8
AT1G30010 Arabidopsis thaliana HOM05D003302 ORTHO05D003785 1.2e-08 62.8 51 54.9
arahy.Tifrunner.gnm1.ann1.VBQQ6F Arachis hypogaea HOM05D003302 ORTHO05D003785 1.2e-08 62.8 51 52.9
CAN.G1235.21 Capsicum annuum HOM05D003302 ORTHO05D003785 1.2e-08 62.8 51 52.9
Cfa000950 Carpinus fangiana HOM05D003302 ORTHO05D003785 1.2e-08 62.8 51 56.9
CiPaw.09G124000 Carya illinoinensis HOM05D003302 ORTHO05D003785 1.2e-08 62.8 51 54.9
MD06G1041700 Malus domestica HOM05D003302 ORTHO05D003785 1.2e-08 62.8 40 77.5
Rhsim13G0194800 Rhododendron simsii HOM05D003302 ORTHO05D003785 1.2e-08 62.8 53 52.8
vmacro03962 Vaccinium macrocarpon HOM05D003302 ORTHO05D003785 1.2e-08 62.8 53 52.8
VMungo0540G2182 Vigna mungo HOM05D003302 ORTHO05D003785 1.2e-08 62.8 51 54.9
Actinidia19525 Actinidia chinensis HOM05D003302 ORTHO05D003785 1.6e-08 62.4 53 50.9
Aa31LG6G5650 Aethionema arabicum HOM05D003302 ORTHO05D003785 1.6e-08 62.4 51 54.9
AL1G43900 Arabidopsis lyrata HOM05D003302 ORTHO05D003785 1.6e-08 62.4 51 54.9
CARHR029380 Cardamine hirsuta HOM05D003302 ORTHO05D003785 1.6e-08 62.4 51 54.9
Sp1g25890 Schrenkiella parvula HOM05D003302 ORTHO05D003785 1.6e-08 62.4 51 54.9
Atru.chr10.1237 Acer truncatum HOM05D003302 ORTHO05D003785 2.1e-08 62.0 51 54.9
BcaC05g27013 Brassica carinata HOM05D003302 ORTHO05D003785 2.1e-08 62.0 51 52.9
A09p36490 Brassica napus HOM05D003302 ORTHO05D003785 2.1e-08 62.0 51 52.9
C05p28800 Brassica napus HOM05D003302 ORTHO05D003785 2.1e-08 62.0 51 52.9
BolC5t31597H Brassica oleracea HOM05D003302 ORTHO05D003785 2.1e-08 62.0 51 52.9
BraA09t39172Z Brassica rapa HOM05D003302 ORTHO05D003785 2.1e-08 62.0 51 52.9
COL.COLO4_29330 Corchorus olitorius HOM05D003302 ORTHO05D003785 2.1e-08 62.0 51 54.9
Duzib128G1415 Durio zibethinus HOM05D003302 ORTHO05D003785 2.1e-08 62.0 51 54.9
Glyma.15G094350 Glycine max HOM05D003302 ORTHO05D003785 2.1e-08 62.0 51 52.9
Oeu034153.1 Olea europaea HOM05D003302 ORTHO05D003785 2.1e-08 62.0 51 54.9
Thecc.05G173100 Theobroma cacao HOM05D003302 ORTHO05D003785 2.1e-08 62.0 51 54.9
TPR.G26652 Trifolium pratense HOM05D003302 ORTHO05D003785 2.1e-08 62.0 51 54.9
CANSAT35G0225 Cannabis sativa HOM05D003302 ORTHO05D003785 2.7e-08 61.6 51 52.9
Aqoxy1G01714 Aquilegia oxysepala HOM05D003302 ORTHO05D003785 3.5e-08 61.2 50 54.0
Ca_00544_v3 Cicer arietinum L. HOM05D003302 ORTHO05D003785 3.5e-08 61.2 51 52.9
Haze_05590 Corylus avellana HOM05D003302 ORTHO05D003785 3.5e-08 61.2 51 54.9
Gohir.A11G314450 Gossypium hirsutum HOM05D003302 ORTHO05D003785 3.5e-08 61.2 51 52.9
Gohir.D11G331550 Gossypium hirsutum HOM05D003302 ORTHO05D003785 3.5e-08 61.2 51 52.9
MBI07_g26352_MAGBIO Magnolia biondii HOM05D003302 ORTHO05D003785 3.5e-08 61.2 53 52.8
Psat1g190600 Pisum sativum HOM05D003302 ORTHO05D003785 3.5e-08 61.2 51 52.9
PGR083G1399 Punica granatum HOM05D003302 ORTHO05D003785 4.6e-08 60.8 51 52.9
unitig_32.g11443 Utricularia gibba HOM05D003302 ORTHO05D003785 4.6e-08 60.8 51 51.0
Lalb_Chr15g0086841 Lupinus albus HOM05D003302 ORTHO05D003785 6.0e-08 60.5 51 54.9
THA.LOC104820647 Tarenaya hassleriana HOM05D003302 ORTHO05D003785 6.0e-08 60.5 51 51.0
DCAR_003918 Daucus carota HOM05D003302 ORTHO05D003785 7.9e-08 60.1 51 52.9
HPP92_002850 Vanilla planifolia HOM05D003302 ORTHO05D003785 7.9e-08 60.1 53 52.8
CsaV3_1G032460 Cucumis sativus L. HOM05D003302 ORTHO05D003785 1.0e-07 59.7 51 51.0
PSO541G5669 Papaver somniferum HOM05D003302 ORTHO05D003785 1.0e-07 59.7 53 50.9
PSO675G7265 Papaver somniferum HOM05D003302 ORTHO05D003785 1.0e-07 59.7 53 50.9
QL10p038886 Quercus lobata HOM05D003302 ORTHO05D003785 1.0e-07 59.7 51 52.9
MD05G1284200 Malus domestica HOM05D003302 ORTHO05D003785 1.3e-07 59.3 51 52.9
Manes.17G069108 Manihot esculenta HOM05D003302 ORTHO05D003785 1.8e-07 58.9 51 52.9
ClCG03G006880 Citrullus lanatus HOM05D003302 ORTHO05D003785 3.9e-07 57.8 51 49.0
MELO3C002733.2 Cucumis melo HOM05D003302 ORTHO05D003785 3.9e-07 57.8 51 49.0
Zm00001eb006520 Zea mays HOM05D003302 ORTHO05D003785 8.7e-07 56.6 51 52.9
Os12g0407300 Oryza sativa ssp. japonica HOM05D003302 ORTHO05D003785 1.1e-06 56.2 51 51.0
SHI24871 Sapria himalayana HOM05D003302 ORTHO05D003785 1.9e-06 55.5 50 52.0
AUR62002753 Chenopodium quinoa HOM05D003302 ORTHO05D003785 2.5e-06 55.1 51 51.0
Ah.09g232620 Amaranthus hybridus HOM05D003302 ORTHO05D003785 4.3e-06 54.3 51 51.0
AUR62030203 Chenopodium quinoa HOM05D003302 ORTHO05D003785 5.6e-06 53.9 51 51.0
HanXRQChr15g0486511 Helianthus annuus HOM05D003302 ORTHO05D003785 5.6e-06 53.9 53 39.6


User provided reference genes

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