Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g16378 Brassica carinata HOM05D003531 ORTHO05D004354 3.7e-90 335.1 167 100.0
Sp3g06930 Schrenkiella parvula HOM05D003531 ORTHO05D004354 3.2e-49 199.1 128 78.9
CARHR082750 Cardamine hirsuta HOM05D003531 ORTHO05D004354 3.5e-48 195.7 132 76.5
AL3G19400 Arabidopsis lyrata HOM05D003531 ORTHO05D004354 3.9e-47 192.2 129 74.4
AT3G08020 Arabidopsis thaliana HOM05D003531 ORTHO05D004354 6.7e-47 191.4 129 74.4
Thhalv10020119m.g Eutrema salsugineum HOM05D003531 ORTHO05D004354 1.5e-46 190.3 125 76.0
Carub.0003s0760 Capsella rubella HOM05D003531 ORTHO05D004354 3.7e-45 185.7 126 73.8
BcaC09g47972 Brassica carinata HOM05D003531 ORTHO05D004354 1.4e-44 183.7 133 73.7
BolC1t05508H Brassica oleracea HOM05D003531 ORTHO05D004354 9.0e-44 181.0 133 72.9
BraA01t04348Z Brassica rapa HOM05D003531 ORTHO05D004354 1.0e-42 177.6 130 73.1
BcaC01g03307 Brassica carinata HOM05D000305 ORTHO05D000065 2.1e-40 169.9 104 84.6
Aa31LG5G18570 Aethionema arabicum HOM05D002263 ORTHO05D003537 1.0e-39 167.5 129 66.7
C03p53830 Brassica napus HOM05D000305 ORTHO05D000065 8.2e-37 157.9 104 80.8
BcaC06g36048 Brassica carinata HOM05D003531 ORTHO05D004354 1.5e-35 153.7 104 78.8
THA.LOC104827429 Tarenaya hassleriana HOM05D003531 ORTHO05D004354 3.8e-34 149.1 135 59.3
Manes.10G140700 Manihot esculenta HOM05D003531 ORTHO05D004354 3.9e-31 139.0 155 49.7
Ciclev10030635m.g Citrus clementina HOM05D003531 ORTHO05D004354 6.7e-31 138.3 139 55.4
ClCG09G004050 Citrullus lanatus HOM05D003531 ORTHO05D004354 8.8e-31 137.9 131 55.0
MELO3C023561.2 Cucumis melo HOM05D003531 ORTHO05D004354 8.8e-31 137.9 131 55.0
CsaV3_7G030950 Cucumis sativus L. HOM05D003531 ORTHO05D004354 1.1e-30 137.5 131 55.0
Manes.07G007000 Manihot esculenta HOM05D003531 ORTHO05D004354 1.1e-30 137.5 142 51.4
Cpa.g.sc125.24 Carica papaya HOM05D003531 ORTHO05D004354 2.0e-30 136.7 153 49.0
Thecc.01G409300 Theobroma cacao HOM05D003531 ORTHO05D004354 2.8e-29 132.9 126 55.6
Sc11g0009100 Simmondsia chinensis HOM05D003531 ORTHO05D004354 6.3e-29 131.7 124 55.6
Gohir.D08G164500 Gossypium hirsutum HOM05D003531 ORTHO05D004354 1.4e-28 130.6 125 55.2
Gorai.004G171500 Gossypium raimondii HOM05D003531 ORTHO05D004354 1.4e-28 130.6 125 55.2
Gohir.A08G143500 Gossypium hirsutum HOM05D003531 ORTHO05D004354 6.9e-28 128.3 125 54.4
Sed0002980 Sechium edule HOM05D003531 ORTHO05D004354 6.9e-28 128.3 131 53.4
GSVIVG01032131001 Vitis vinifera HOM05D003531 ORTHO05D004354 2.6e-27 126.3 126 54.8
Duzib138G1641 Durio zibethinus HOM05D003531 ORTHO05D004354 3.4e-27 125.9 130 53.1
Sed0001045 Sechium edule HOM05D003531 ORTHO05D004354 5.9e-27 125.2 131 51.1
Lj9C634G4 Lonicera japonica HOM05D003531 ORTHO05D004354 1.0e-26 124.4 125 54.4
TWI09G1532 Tripterygium wilfordii HOM05D003531 ORTHO05D004354 1.3e-26 124.0 129 50.4
TWI73G0346 Tripterygium wilfordii HOM05D003531 ORTHO05D004354 8.5e-26 121.3 131 48.9
CiPaw.14G001000 Carya illinoinensis HOM05D003531 ORTHO05D004354 5.5e-25 118.6 125 49.6
Sopen01g034360 Solanum pennellii HOM05D003531 ORTHO05D004354 9.4e-25 117.9 129 48.1
Actinidia21545 Actinidia chinensis HOM05D003531 ORTHO05D004354 2.7e-24 116.3 125 48.8
MSTRG.5029 Avicennia marina HOM05D003531 ORTHO05D004354 4.7e-24 115.5 132 48.5
Cc02_g28130 Coffea canephora HOM05D003531 ORTHO05D004354 4.7e-24 115.5 134 47.0
Solyc01g087430.3 Solanum lycopersicum HOM05D003531 ORTHO05D004354 4.7e-24 115.5 129 46.5
Sopen01g034370 Solanum pennellii HOM05D003531 ORTHO05D004354 4.7e-24 115.5 129 46.5
Hma1.2p1_0495F.1_g165700 Hydrangea macrophylla HOM05D003531 ORTHO05D004354 7.9e-24 114.8 93 58.1
Oeu063180.2 Olea europaea HOM05D003531 ORTHO05D004354 7.9e-24 114.8 139 51.1
vmacro21192 Vaccinium macrocarpon HOM05D003531 ORTHO05D004354 1.0e-23 114.4 129 48.1
HanXRQChr09g0251321 Helianthus annuus HOM05D003531 ORTHO05D004354 1.8e-23 113.6 149 43.6
arahy.Tifrunner.gnm1.ann1.T4LWN5 Arachis hypogaea HOM05D003531 ORTHO05D004354 2.3e-23 113.2 125 50.4
Lj3g0012564 Lotus japonicus HOM05D003531 ORTHO05D004354 3.0e-23 112.8 123 49.6
Lj3g0024838 Lotus japonicus HOM05D003531 ORTHO05D004354 3.0e-23 112.8 123 49.6
Potri.001G264800 Populus trichocarpa HOM05D003531 ORTHO05D004354 3.0e-23 112.8 138 45.7
Migut.N01608 Erythranthe guttata HOM05D003531 ORTHO05D004354 3.9e-23 112.5 103 56.3
Gohir.A08G028300 Gossypium hirsutum HOM05D003531 ORTHO05D004354 3.9e-23 112.5 123 47.2
Nn7g36242 Nelumbo nucifera HOM05D003531 ORTHO05D004354 3.9e-23 112.5 129 46.5
Prupe.2G016600 Prunus persica HOM05D003531 ORTHO05D004354 3.9e-23 112.5 85 62.4
Gohir.D08G039066 Gossypium hirsutum HOM05D003531 ORTHO05D004354 5.2e-23 112.1 123 47.2
Hund19803 Selenicereus undatus HOM05D003531 ORTHO05D004354 5.2e-23 112.1 149 43.0
EL10Ac2g04341 Beta vulgaris HOM05D003531 ORTHO05D004354 8.8e-23 111.3 93 57.0
Dinv09345 Davidia involucrata HOM05D003531 ORTHO05D004354 8.8e-23 111.3 85 61.2
AUR62023077 Chenopodium quinoa HOM05D003531 ORTHO05D004354 1.1e-22 110.9 126 47.6
Solyc01g087390.2 Solanum lycopersicum HOM05D003531 ORTHO05D004354 1.5e-22 110.5 122 46.7
Eucgr.G03370 Eucalyptus grandis HOM05D003531 ORTHO05D004354 2.0e-22 110.2 106 51.9
MBI04_g44436_MAGBIO Magnolia biondii HOM05D003531 ORTHO05D004354 2.0e-22 110.2 129 48.1
ECA248G0343 Erigeron canadensis HOM05D003531 ORTHO05D004354 2.6e-22 109.8 135 47.4
MD02G1308700 Malus domestica HOM05D003531 ORTHO05D004354 2.6e-22 109.8 130 48.5
PSO384G4091 Papaver somniferum HOM05D003531 ORTHO05D004354 2.6e-22 109.8 109 51.4
Lsat_1_v5_gn_1_106281 Lactuca sativa HOM05D003531 ORTHO05D004354 3.3e-22 109.4 131 47.3
Lalb_Chr25g0282961 Lupinus albus HOM05D003531 ORTHO05D004354 4.4e-22 109.0 137 46.7
Nn2g15298 Nelumbo nucifera HOM05D003531 ORTHO05D004354 4.4e-22 109.0 130 45.4
Psat0s1245g0040 Pisum sativum HOM05D003531 ORTHO05D004354 5.7e-22 108.6 123 46.3
Solyc01g087410.4 Solanum lycopersicum HOM05D003531 ORTHO05D004354 5.7e-22 108.6 122 45.9
Sabra16G0162700 Salix brachista HOM05D003531 ORTHO05D004354 7.4e-22 108.2 139 45.3
TAR633G0763 Trochodendron aralioides HOM05D003531 ORTHO05D004354 7.4e-22 108.2 114 50.9
Ca_19577_v3 Cicer arietinum L. HOM05D003531 ORTHO05D004354 9.7e-22 107.8 123 46.3
FAN10G4005 Fragaria x ananassa HOM05D003531 ORTHO05D004354 9.7e-22 107.8 89 58.4
MD07G1013100 Malus domestica HOM05D003531 ORTHO05D004354 9.7e-22 107.8 82 61.0
SGA_v2.0_scaffold24G10668 Striga asiatica HOM05D003531 ORTHO05D004354 9.7e-22 107.8 123 46.3
CDE05G0662 Ceratophyllum demersum HOM05D003531 ORTHO05D004354 1.3e-21 107.5 127 47.2
COL.COLO4_04865 Corchorus olitorius HOM05D003531 ORTHO05D004354 1.3e-21 107.5 128 46.9
Gorai.004G037700 Gossypium raimondii HOM05D003531 ORTHO05D004354 1.3e-21 107.5 123 45.5
PSO339G4096 Papaver somniferum HOM05D003531 ORTHO05D004354 1.3e-21 107.5 109 50.5
ATR0332G091 Amborella trichopoda HOM05D003531 ORTHO05D004354 1.7e-21 107.1 130 47.7
AUR62009395 Chenopodium quinoa HOM05D003531 ORTHO05D004354 2.8e-21 106.3 142 45.8
FvH4_7g01200 Fragaria vesca HOM05D003531 ORTHO05D004354 3.7e-21 105.9 86 59.3
FAN06G4268 Fragaria x ananassa HOM05D003531 ORTHO05D004354 3.7e-21 105.9 86 59.3
FAN01G0774 Fragaria x ananassa HOM05D003531 ORTHO05D004354 4.8e-21 105.5 93 55.9
HanXRQChr17g0563011 Helianthus annuus HOM05D003531 ORTHO05D004354 4.8e-21 105.5 130 44.6
Sopen01g034460 Solanum pennellii HOM05D003531 ORTHO05D004354 6.3e-21 105.1 122 44.3
RcHm_v2.0_Chr1g0316671 Rosa chinensis HOM05D003531 ORTHO05D004354 1.4e-20 104.0 84 59.5
CiPaw.13G006400 Carya illinoinensis HOM05D003531 ORTHO05D004354 2.4e-20 103.2 76 63.2
Rhsim01G0128500 Rhododendron simsii HOM05D003531 ORTHO05D004354 2.4e-20 103.2 85 56.5
BcaC08g45915 Brassica carinata HOM05D003531 ORTHO05D004354 3.1e-20 102.8 66 77.3
CSS0044266 Camellia sinensis var. sinensis HOM05D003531 ORTHO05D004354 3.1e-20 102.8 73 63.0
CDE05G3403 Ceratophyllum demersum HOM05D003531 ORTHO05D004354 3.1e-20 102.8 127 44.1
Dinv43430 Davidia involucrata HOM05D003531 ORTHO05D004354 3.1e-20 102.8 73 64.4
Sc23g0005960 Simmondsia chinensis HOM05D003531 ORTHO05D004354 3.1e-20 102.8 89 55.1
TAR369G0316 Trochodendron aralioides HOM05D003531 ORTHO05D004354 3.1e-20 102.8 134 43.3
CANSAT80G0550 Cannabis sativa HOM05D003531 ORTHO05D004354 7.0e-20 101.7 76 63.2
DCAR_029680 Daucus carota HOM05D003531 ORTHO05D004354 7.0e-20 101.7 156 39.7
BolC2t10233H Brassica oleracea HOM05D003531 ORTHO05D105492 1.2e-19 100.9 58 91.4
Lalb_Chr19g0140301 Lupinus albus HOM05D003531 ORTHO05D004354 1.2e-19 100.9 125 44.0
QL04p008146 Quercus lobata HOM05D003531 ORTHO05D004354 1.2e-19 100.9 76 61.8
QL04p008498 Quercus lobata HOM05D003531 ORTHO05D004354 1.2e-19 100.9 76 61.8
Hund21485 Selenicereus undatus HOM05D003531 ORTHO05D004354 2.6e-19 99.8 123 40.7
arahy.Tifrunner.gnm1.ann1.L35I2V Arachis hypogaea HOM05D003531 ORTHO05D004354 3.5e-19 99.4 144 40.3
arahy.Tifrunner.gnm1.ann1.V60VE2 Arachis hypogaea HOM05D003531 ORTHO05D004354 3.5e-19 99.4 144 40.3
Lalb_Chr01g0000391 Lupinus albus HOM05D003531 ORTHO05D004354 3.5e-19 99.4 129 42.6
Glyma.12G007900 Glycine max HOM05D003531 ORTHO05D004354 5.9e-19 98.6 123 43.1
Sopen01g034350 Solanum pennellii HOM05D003531 ORTHO05D004354 5.9e-19 98.6 109 47.7
Sopen01g034440 Solanum pennellii HOM05D003531 ORTHO05D004354 5.9e-19 98.6 101 49.5
Potri.009G059500 Populus trichocarpa HOM05D003531 ORTHO05D004354 1.0e-18 97.8 135 41.5
Haze_03181 Corylus avellana HOM05D003531 ORTHO05D004354 1.7e-18 97.1 65 67.7
Glyma.09G228600 Glycine max HOM05D003531 ORTHO05D004354 2.2e-18 96.7 126 40.5
Nitab4.5_0002918g0090 Nicotiana tabacum HOM05D003531 ORTHO05D004833 2.2e-18 96.7 73 58.9
Actinidia20660 Actinidia chinensis HOM05D003531 ORTHO05D004354 2.9e-18 96.3 94 52.1
Peaxi162Scf00953g00513 Petunia axillaris HOM05D003531 ORTHO05D004354 5.0e-18 95.5 73 58.9
Atru.chr11.2606 Acer truncatum HOM05D003531 ORTHO05D004354 8.5e-18 94.7 73 57.5
C02p42000 Brassica napus HOM05D003531 ORTHO05D004354 1.5e-17 94.0 42 97.6
MBI02_g23150_MAGBIO Magnolia biondii HOM05D003531 ORTHO05D004354 1.5e-17 94.0 97 46.4
BolC2t10232H Brassica oleracea HOM05D003531 ORTHO05D004354 1.9e-17 93.6 42 95.2
Phvul.011G010000 Phaseolus vulgaris HOM05D003531 ORTHO05D004354 1.9e-17 93.6 125 40.0
Solyc01g087420.4 Solanum lycopersicum HOM05D003531 ORTHO05D004354 2.5e-17 93.2 75 56.0
VMungo1127G0476 Vigna mungo HOM05D003531 ORTHO05D004354 2.5e-17 93.2 123 40.7
TPR.G3645 Trifolium pratense HOM05D003531 ORTHO05D004354 3.2e-17 92.8 96 46.9
Medtr4g037745 Medicago truncatula HOM05D003531 ORTHO05D004354 5.5e-17 92.0 96 47.9
C06p37170 Brassica napus HOM05D003531 ORTHO05D004354 7.2e-17 91.7 42 95.2
Aqoxy2G00168 Aquilegia oxysepala HOM05D003531 ORTHO05D004354 9.4e-17 91.3 114 43.9
Aqoxy2G00174 Aquilegia oxysepala HOM05D003531 ORTHO05D004354 9.4e-17 91.3 114 43.9
arahy.Tifrunner.gnm1.ann1.2BQ2P0 Arachis hypogaea HOM05D003531 ORTHO05D004354 1.6e-16 90.5 186 34.4
Lsat_1_v5_gn_4_31500 Lactuca sativa HOM05D003531 ORTHO05D004354 2.7e-16 89.7 76 55.3
PGR031G1295 Punica granatum HOM05D003531 ORTHO05D004354 6.7e-15 85.1 77 49.4
BcaB01g00446 Brassica carinata HOM05D003531 ORTHO05D004354 2.0e-14 83.6 129 43.4
BcaC06g33024 Brassica carinata HOM05D003531 ORTHO05D004354 2.0e-14 83.6 129 43.4
C08p27360 Brassica napus HOM05D003531 ORTHO05D004354 1.3e-13 80.9 128 39.8
BcaNung06091 Brassica carinata HOM05D003531 ORTHO05D004354 2.2e-13 80.1 127 40.2
A09p45150 Brassica napus HOM05D003531 ORTHO05D004354 2.2e-13 80.1 128 40.6
Sabra09G0043900 Salix brachista HOM05D003531 ORTHO05D004354 2.2e-13 80.1 89 43.8
AL5G32650 Arabidopsis lyrata HOM05D003531 ORTHO05D004354 2.8e-13 79.7 126 39.7
AT3G52100 Arabidopsis thaliana HOM05D003531 ORTHO05D004354 3.7e-13 79.3 126 40.5
BcaB05g24179 Brassica carinata HOM05D003531 ORTHO05D004354 3.7e-13 79.3 134 39.6
AUR62043479 Chenopodium quinoa HOM05D003531 ORTHO05D004354 3.7e-13 79.3 108 44.4
HPP92_009589 Vanilla planifolia HOM05D003531 ORTHO05D004354 3.7e-13 79.3 126 38.1
BolC8t50353H Brassica oleracea HOM05D003531 ORTHO05D004354 6.3e-13 78.6 141 40.4
BolC7t45196H Brassica oleracea HOM05D003531 ORTHO05D004354 1.4e-12 77.4 131 40.5
Carub.0005s1842 Capsella rubella HOM05D003531 ORTHO05D004354 2.4e-12 76.6 132 40.9
Sp5g10200 Schrenkiella parvula HOM05D003531 ORTHO05D004354 2.4e-12 76.6 129 39.5
BcaB01g02046 Brassica carinata HOM05D003531 ORTHO05D015800 4.1e-12 75.9 134 37.3
CARHR161810 Cardamine hirsuta HOM05D003531 ORTHO05D004354 4.1e-12 75.9 130 39.2
BraA09t39978Z Brassica rapa HOM05D003531 ORTHO05D004354 7.0e-12 75.1 146 35.6
Aa31LG10G7170 Aethionema arabicum HOM05D003531 ORTHO05D004354 9.1e-12 74.7 94 44.7
BcaC06g33381 Brassica carinata HOM05D003531 ORTHO05D004354 1.6e-11 73.9 124 38.7
Potri.009G059700 Populus trichocarpa HOM05D003531 ORTHO05D004354 1.6e-11 73.9 60 51.7
A03p48680 Brassica napus HOM05D003531 ORTHO05D004354 7.7e-11 71.6 115 40.0
ECA234G4456 Erigeron canadensis HOM05D003531 ORTHO05D004354 7.7e-11 71.6 126 41.3
C07p46790 Brassica napus HOM05D003531 ORTHO05D004354 1.3e-10 70.9 124 39.5
BraA03t13971Z Brassica rapa HOM05D003531 ORTHO05D004354 1.3e-10 70.9 125 40.0
Solyc01g087320.3 Solanum lycopersicum HOM05D003531 ORTHO05D004354 1.3e-10 70.9 56 53.6
Thhalv10010234m.g Eutrema salsugineum HOM05D003531 ORTHO05D004354 2.2e-10 70.1 83 42.2
Os12g0527800 Oryza sativa ssp. japonica HOM05D003531 ORTHO05D004354 1.1e-09 67.8 42 57.1
Mapoly0014s0141 Marchantia polymorpha HOM05D003531 ORTHO05D004354 3.0e-07 59.7 62 45.2
AagrBONN_evm.TU.Sc2ySwM_344.3832 Anthoceros agrestis HOM05D003531 ORTHO05D004354 4.0e-07 59.3 67 38.8
BcaC06g33023 Brassica carinata HOM05D003531 ORTHO05D004354 4.0e-07 59.3 125 33.6
BcaC09g49888 Brassica carinata HOM05D003531 ORTHO05D015800 5.2e-07 58.9 63 47.6
Pp3c8_14490 Physcomitrium patens HOM05D003531 ORTHO05D004354 5.2e-07 58.9 43 53.5
BolC1t03102H Brassica oleracea HOM05D003531 ORTHO05D015800 6.8e-07 58.5 90 38.9
Solyc01g087340.3 Solanum lycopersicum HOM05D003531 ORTHO05D030633 8.8e-07 58.2 81 43.2
C01p31670 Brassica napus HOM05D003513 ORTHO05D015800 7.5e-06 55.1 62 46.8


User provided reference genes

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