Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g16316 Brassica carinata HOM05D005801 ORTHO05D016715 8.6e-38 159.8 81 100.0
BcaC04g20246 Brassica carinata HOM05D005801 ORTHO05D016715 5.6e-29 130.6 79 82.3
BolC9t57462H Brassica oleracea HOM05D005801 ORTHO05D016715 5.6e-29 130.6 79 82.3
C09p45950 Brassica napus HOM05D005801 ORTHO05D016715 9.5e-29 129.8 79 81.0
BcaC06g36648 Brassica carinata HOM05D005801 ORTHO05D008555 1.4e-19 99.4 71 67.6
BolC7t40588H Brassica oleracea HOM05D005801 ORTHO05D008555 1.4e-19 99.4 71 67.6
C07p01810 Brassica napus HOM05D005801 ORTHO05D008555 1.8e-19 99.0 71 67.6
Thhalv10002296m.g Eutrema salsugineum HOM05D005801 ORTHO05D008555 2.3e-19 98.6 71 66.2
Sp3g33210 Schrenkiella parvula HOM05D005801 ORTHO05D008555 2.3e-19 98.6 71 66.2
BcaB03g16775 Brassica carinata HOM05D005801 ORTHO05D008555 3.1e-19 98.2 71 66.2
A07p26140 Brassica napus HOM05D005801 ORTHO05D013666 3.1e-19 98.2 68 73.5
A07p00840 Brassica napus HOM05D005801 ORTHO05D008555 6.8e-19 97.1 71 64.8
BraA07t27882Z Brassica rapa HOM05D005801 ORTHO05D008555 6.8e-19 97.1 71 64.8
BcaC04g22492 Brassica carinata HOM05D005801 ORTHO05D016715 1.5e-18 95.9 62 79.0
BraA07t30260Z Brassica rapa HOM05D005801 ORTHO05D013666 1.5e-18 95.9 68 72.1
CARHR110310 Cardamine hirsuta HOM05D005801 ORTHO05D008555 1.5e-18 95.9 71 64.8
AL3G48350 Arabidopsis lyrata HOM05D005801 ORTHO05D008555 2.6e-18 95.1 71 63.4
Carub.0003s3414 Capsella rubella HOM05D005801 ORTHO05D008555 2.6e-18 95.1 71 63.4
AT2G19870 Arabidopsis thaliana HOM05D005801 ORTHO05D008555 5.8e-18 94.0 71 62.0
C03p54440 Brassica napus HOM05D005801 ORTHO05D041341 5.8e-18 94.0 59 76.3
BolC3t17730H Brassica oleracea HOM05D005801 ORTHO05D041341 5.8e-18 94.0 59 76.3
THA.LOC104814572 Tarenaya hassleriana HOM05D005801 ORTHO05D008555 3.2e-16 88.2 71 56.3
SalBow1G2797 Salvia bowleyana HOM05D005801 ORTHO05D008555 4.1e-16 87.8 71 57.7
Gorai.001G010100 Gossypium raimondii HOM05D005801 ORTHO05D008555 5.4e-16 87.4 71 57.7
MD02G1065700 Malus domestica HOM05D005801 ORTHO05D008555 5.4e-16 87.4 71 54.9
Prupe.7G219800 Prunus persica HOM05D005801 ORTHO05D008555 9.2e-16 86.7 71 54.9
Gohir.D07G009800 Gossypium hirsutum HOM05D005801 ORTHO05D008555 1.2e-15 86.3 71 56.3
Medtr8g102480 Medicago truncatula HOM05D005801 ORTHO05D008555 1.2e-15 86.3 72 52.8
Rhsim03G0236600 Rhododendron simsii HOM05D005801 ORTHO05D008555 1.2e-15 86.3 72 52.8
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 1.2e-15 86.3 71 54.9
MSTRG.10602 Avicennia marina HOM05D005801 ORTHO05D008555 1.6e-15 85.9 71 56.3
Lalb_Chr05g0223241 Lupinus albus HOM05D005801 ORTHO05D008555 1.6e-15 85.9 71 53.5
Actinidia32650 Actinidia chinensis HOM05D005801 ORTHO05D008555 2.0e-15 85.5 71 54.9
Lj4g0016627 Lotus japonicus HOM05D005801 ORTHO05D008555 2.0e-15 85.5 69 56.5
MBI04_g34406_MAGBIO Magnolia biondii HOM05D005801 ORTHO05D008555 2.0e-15 85.5 71 56.3
Sc18g0001500 Simmondsia chinensis HOM05D005801 ORTHO05D008555 2.0e-15 85.5 71 56.3
TAR636G1320 Trochodendron aralioides HOM05D005801 ORTHO05D008555 2.0e-15 85.5 71 53.5
CANSAT21G1751 Cannabis sativa HOM05D005801 ORTHO05D008555 2.7e-15 85.1 71 53.5
Dinv36686 Davidia involucrata HOM05D005801 ORTHO05D008555 2.7e-15 85.1 71 53.5
Duzib132G0722 Durio zibethinus HOM05D005801 ORTHO05D008555 2.7e-15 85.1 69 56.5
Duzib150G1339 Durio zibethinus HOM05D005801 ORTHO05D008555 2.7e-15 85.1 69 56.5
Nitab4.5_0000066g0110 Nicotiana tabacum HOM05D005801 ORTHO05D008555 2.7e-15 85.1 71 50.7
Peaxi162Scf00720g00044 Petunia axillaris HOM05D005801 ORTHO05D008555 2.7e-15 85.1 71 56.3
CSS0008146 Camellia sinensis var. sinensis HOM05D005801 ORTHO05D008555 3.5e-15 84.7 71 54.9
FvH4_1g06150 Fragaria vesca HOM05D005801 ORTHO05D008555 3.5e-15 84.7 70 54.3
FAN19G1715 Fragaria x ananassa HOM05D005801 ORTHO05D008555 3.5e-15 84.7 70 54.3
FAN23G0343 Fragaria x ananassa HOM05D005801 ORTHO05D008555 3.5e-15 84.7 70 54.3
FAN26G1273 Fragaria x ananassa HOM05D005801 ORTHO05D008555 3.5e-15 84.7 70 54.3
FAN28G2516 Fragaria x ananassa HOM05D005801 ORTHO05D008555 3.5e-15 84.7 70 54.3
Gohir.A07G009500 Gossypium hirsutum HOM05D005801 ORTHO05D008555 3.5e-15 84.7 71 56.3
Nitab4.5_0001703g0010 Nicotiana tabacum HOM05D005801 ORTHO05D008555 3.5e-15 84.7 71 49.3
Psat7g016720 Pisum sativum HOM05D005801 ORTHO05D008555 3.5e-15 84.7 72 51.4
RcHm_v2.0_Chr2g0091911 Rosa chinensis HOM05D005801 ORTHO05D008555 3.5e-15 84.7 70 54.3
Thecc.09G100600 Theobroma cacao HOM05D005801 ORTHO05D008555 3.5e-15 84.7 69 56.5
CDE04G1187 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 4.6e-15 84.3 71 54.9
vmacro06253 Vaccinium macrocarpon HOM05D005801 ORTHO05D008555 4.6e-15 84.3 71 53.5
arahy.Tifrunner.gnm1.ann1.BF4XTR Arachis hypogaea HOM05D005801 ORTHO05D008555 6.0e-15 84.0 71 53.5
Manes.16G108700 Manihot esculenta HOM05D005801 ORTHO05D008555 7.8e-15 83.6 68 55.9
CAN.G370.29 Capsicum annuum HOM05D005801 ORTHO05D008555 1.0e-14 83.2 69 53.6
QL02p041581 Quercus lobata HOM05D005801 ORTHO05D008555 1.0e-14 83.2 71 52.1
TWI63G0976 Tripterygium wilfordii HOM05D005801 ORTHO05D008555 1.0e-14 83.2 69 55.1
Eucgr.C00997 Eucalyptus grandis HOM05D005801 ORTHO05D008555 1.3e-14 82.8 67 56.7
Phvul.002G308600 Phaseolus vulgaris HOM05D005801 ORTHO05D008555 1.3e-14 82.8 71 52.1
VMungo0251G1949 Vigna mungo HOM05D005801 ORTHO05D008555 1.3e-14 82.8 71 52.1
Lsat_1_v5_gn_5_144900 Lactuca sativa HOM05D005801 ORTHO05D008555 1.7e-14 82.4 71 50.7
Oeu053186.1 Olea europaea HOM05D005801 ORTHO05D008555 1.7e-14 82.4 71 53.5
Cc06_g10480 Coffea canephora HOM05D005801 ORTHO05D008555 2.3e-14 82.0 71 49.3
COL.COLO4_34743 Corchorus olitorius HOM05D005801 ORTHO05D008555 2.3e-14 82.0 69 53.6
Aa31LG8G16820 Aethionema arabicum HOM05D005801 ORTHO05D008555 3.0e-14 81.6 73 52.1
EL10Ac8g18377 Beta vulgaris HOM05D005801 ORTHO05D008555 3.0e-14 81.6 71 54.9
Migut.K00541 Erythranthe guttata HOM05D005801 ORTHO05D008555 3.0e-14 81.6 71 52.1
CiPaw.04G157900 Carya illinoinensis HOM05D005801 ORTHO05D008555 3.9e-14 81.3 71 50.7
Ca_17365_v3 Cicer arietinum L. HOM05D005801 ORTHO05D008555 3.9e-14 81.3 72 51.4
Solyc05g017990.4 Solanum lycopersicum HOM05D005801 ORTHO05D008555 3.9e-14 81.3 71 49.3
Sopen05g014540 Solanum pennellii HOM05D005801 ORTHO05D008555 3.9e-14 81.3 71 49.3
PGSC0003DMG400038162 Solanum tuberosum HOM05D005801 ORTHO05D008555 3.9e-14 81.3 71 49.3
Aqoxy7G01401 Aquilegia oxysepala HOM05D005801 ORTHO05D008555 5.0e-14 80.9 71 49.3
Cfa003179 Carpinus fangiana HOM05D005801 ORTHO05D008555 5.0e-14 80.9 71 50.7
ATR0681G166 Amborella trichopoda HOM05D005801 ORTHO05D008555 6.6e-14 80.5 72 51.4
BcaC01g01198 Brassica carinata HOM05D041247 ORTHO05D016715 6.6e-14 80.5 78 57.7
BcaB01g00402 Brassica carinata HOM05D041247 ORTHO05D016715 8.6e-14 80.1 78 57.7
PSO063G7511 Papaver somniferum HOM05D005801 ORTHO05D008555 8.6e-14 80.1 71 50.7
PSO832G4312 Papaver somniferum HOM05D005801 ORTHO05D008555 8.6e-14 80.1 71 50.7
DCAR_028663 Daucus carota HOM05D005801 ORTHO05D008555 1.1e-13 79.7 71 49.3
Sabra18G0076100 Salix brachista HOM05D005801 ORTHO05D008555 1.1e-13 79.7 71 50.7
Lj4P387T11 Lonicera japonica HOM05D005801 ORTHO05D008555 1.5e-13 79.3 71 49.3
FAN19G0317 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.9e-13 79.0 70 50.0
HanXRQChr12g0378121 Helianthus annuus HOM05D005801 ORTHO05D008555 1.9e-13 79.0 71 47.9
SGA_v2.0_scaffold129G34141 Striga asiatica HOM05D005801 ORTHO05D008555 1.9e-13 79.0 71 49.3
Potri.018G087800 Populus trichocarpa HOM05D005801 ORTHO05D008555 2.5e-13 78.6 71 49.3
BcaB07g33268 Brassica carinata HOM05D005801 ORTHO05D016715 3.3e-13 78.2 53 75.5
BcaB07g33439 Brassica carinata HOM05D005801 ORTHO05D016715 5.6e-13 77.4 53 73.6
CsaV3_1G039790 Cucumis sativus L. HOM05D005801 ORTHO05D008555 5.6e-13 77.4 69 49.3
HPP92_009088 Vanilla planifolia HOM05D005801 ORTHO05D008555 9.5e-13 76.6 74 52.7
MELO3C015412.2 Cucumis melo HOM05D005801 ORTHO05D008555 1.2e-12 76.3 69 47.8
Glyma.08G033500 Glycine max HOM05D005801 ORTHO05D008555 3.6e-12 74.7 71 47.9
FAN26G1315 Fragaria x ananassa HOM05D005801 ORTHO05D008555 4.7e-12 74.3 70 51.4
Sed0027809 Sechium edule HOM05D005801 ORTHO05D008555 4.7e-12 74.3 69 47.8
Ciclev10007826m.g Citrus clementina HOM05D005801 ORTHO05D008555 6.2e-12 73.9 71 47.9
ECA234G2262 Erigeron canadensis HOM05D005801 ORTHO05D008555 1.4e-11 72.8 72 47.2
unitig_46.g18397 Utricularia gibba HOM05D005801 ORTHO05D008555 2.3e-11 72.0 69 43.5
SHI02689 Sapria himalayana HOM05D005801 ORTHO05D008555 3.1e-11 71.6 71 43.7
Zm00001eb371210 Zea mays HOM05D005801 ORTHO05D008555 4.4e-10 67.8 71 45.1
CAN.G775.15 Capsicum annuum HOM05D005801 ORTHO05D008555 5.8e-10 67.4 64 46.9
BcaNung00771 Brassica carinata HOM05D013368 ORTHO05D031982 1.7e-09 65.9 46 71.7
HanXRQChr10g0318931 Helianthus annuus HOM05D005801 ORTHO05D008555 1.7e-09 65.9 57 52.6
HanXRQChr10g0318941 Helianthus annuus HOM05D005801 ORTHO05D008555 1.7e-09 65.9 57 52.6
HanXRQChr14g0438761 Helianthus annuus HOM05D005801 ORTHO05D008555 1.7e-09 65.9 57 52.6
BolC7t43482H Brassica oleracea HOM05D013368 ORTHO05D031982 2.9e-09 65.1 45 73.3
C03p74890 Brassica napus HOM05D013368 ORTHO05D031982 3.7e-09 64.7 45 71.1
BraSC37t46140Z Brassica rapa HOM05D013368 ORTHO05D024584 2.4e-08 62.0 38 78.9
C09p38590 Brassica napus HOM05D013368 ORTHO05D024584 9.2e-08 60.1 42 71.4
CAN.G1277.2 Capsicum annuum HOM05D005801 ORTHO05D008555 7.8e-07 57.0 56 46.4
BcaC01g03242 Brassica carinata HOM05D013368 ORTHO05D091529 1.3e-06 56.2 40 70.0
Cpa.g.sc40.94 Carica papaya HOM05D005801 ORTHO05D008555 5.1e-06 54.3 52 48.1
Lalb_Chr09g0331551 Lupinus albus HOM05D005801 ORTHO05D008555 8.6e-06 53.5 44 52.3


User provided reference genes

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