Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g15410 Brassica carinata HOM05D004170 ORTHO05D016022 7.9e-58 226.9 112 100.0
BolC2t11974H Brassica oleracea HOM05D004170 ORTHO05D016022 1.6e-55 219.2 115 96.5
BraA01t00641Z Brassica rapa HOM05D004170 ORTHO05D016022 1.2e-50 203.0 119 89.1
BraA01t01167Z Brassica rapa HOM05D004170 ORTHO05D016022 1.2e-50 203.0 119 89.1
BraA03t12690Z Brassica rapa HOM05D004170 ORTHO05D016022 2.1e-50 202.2 119 88.2
BcaNung01479 Brassica carinata HOM05D004170 ORTHO05D016022 8.2e-47 190.3 115 87.0
BolC6t35221H Brassica oleracea HOM05D004170 ORTHO05D016022 1.5e-32 142.9 74 97.3
BolC3t16254H Brassica oleracea HOM05D004170 ORTHO05D005976 1.1e-30 136.7 119 66.4
BolC6t38965H Brassica oleracea HOM05D004170 ORTHO05D104353 1.0e-28 130.2 68 97.1
C06p00790 Brassica napus HOM05D004170 ORTHO05D016022 2.9e-28 128.6 115 64.3
A01p06930 Brassica napus HOM05D004170 ORTHO05D016022 3.8e-28 128.3 115 63.5
BraA06t26553Z Brassica rapa HOM05D004170 ORTHO05D016022 3.8e-28 128.3 115 63.5
BcaC05g28297 Brassica carinata HOM05D004170 ORTHO05D005976 5.5e-27 124.4 95 72.6
BolC4t26743H Brassica oleracea HOM05D004170 ORTHO05D005976 3.6e-26 121.7 78 80.8
BcaC07g37614 Brassica carinata HOM05D004170 ORTHO05D095228 4.7e-26 121.3 114 61.4
C04p51630 Brassica napus HOM05D004170 ORTHO05D005976 8.0e-26 120.6 78 80.8
BcaC07g37616 Brassica carinata HOM05D004170 ORTHO05D005976 1.0e-25 120.2 121 58.7
BcaC02g08695 Brassica carinata HOM05D004170 ORTHO05D016022 5.2e-25 117.9 115 60.0
BcaC01g04465 Brassica carinata HOM05D004170 ORTHO05D005976 8.5e-20 100.5 88 63.6
BcaC02g07186 Brassica carinata HOM05D004170 ORTHO05D005976 7.2e-19 97.4 73 69.9
C04p70380 Brassica napus HOM05D004170 ORTHO05D005976 7.2e-19 97.4 73 69.9
BolC4t28541H Brassica oleracea HOM05D004170 ORTHO05D005976 7.2e-19 97.4 73 69.9
BcaC01g05235 Brassica carinata HOM05D004170 ORTHO05D005976 1.2e-18 96.7 73 69.9
A03p24220 Brassica napus HOM05D004170 ORTHO05D005976 1.2e-18 96.7 73 69.9
C03p28850 Brassica napus HOM05D004170 ORTHO05D005976 1.2e-18 96.7 73 69.9
BolC3t15244H Brassica oleracea HOM05D004170 ORTHO05D005976 1.2e-18 96.7 73 69.9
BcaB06g29308 Brassica carinata HOM05D004170 ORTHO05D005976 1.0e-17 93.6 73 68.5
BcaC02g07185 Brassica carinata HOM05D004170 ORTHO05D005976 1.0e-17 93.6 73 68.5
BraA03t11631Z Brassica rapa HOM05D004170 ORTHO05D005976 1.8e-17 92.8 69 71.0
Thhalv10001559m.g Eutrema salsugineum HOM05D004170 ORTHO05D005976 1.8e-17 92.8 72 66.7
AT2G43370 Arabidopsis thaliana HOM05D004170 ORTHO05D005976 5.2e-17 91.3 73 63.0
THA.LOC104802303 Tarenaya hassleriana HOM05D004170 ORTHO05D005976 5.2e-17 91.3 73 61.6
Sp4g25470 Schrenkiella parvula HOM05D004170 ORTHO05D005976 6.7e-17 90.9 73 64.4
PGR142G1978 Punica granatum HOM05D004170 ORTHO05D005976 8.8e-17 90.5 78 60.3
EL10Ac3g06299 Beta vulgaris HOM05D004170 ORTHO05D005976 1.2e-16 90.1 82 58.5
Hma1.2p1_2974F.1_g331120 Hydrangea macrophylla HOM05D004170 ORTHO05D005976 1.5e-16 89.7 73 65.8
Ah.07g204090 Amaranthus hybridus HOM05D004170 ORTHO05D005976 2.0e-16 89.4 82 58.5
AL4G42050 Arabidopsis lyrata HOM05D004170 ORTHO05D005976 2.6e-16 89.0 73 64.4
Carub.0004s2583 Capsella rubella HOM05D004170 ORTHO05D005976 2.6e-16 89.0 73 60.3
Aa31LG1G25070 Aethionema arabicum HOM05D004170 ORTHO05D000604 3.3e-16 88.6 88 54.5
BcaC03g15872 Brassica carinata HOM05D004170 ORTHO05D005976 3.3e-16 88.6 72 65.3
Eucgr.L01383 Eucalyptus grandis HOM05D004170 ORTHO05D005976 3.3e-16 88.6 73 64.4
C02p36260 Brassica napus HOM05D004170 ORTHO05D005976 4.4e-16 88.2 72 65.3
Actinidia39857 Actinidia chinensis HOM05D004170 ORTHO05D005976 5.7e-16 87.8 73 63.0
Thecc.05G003100 Theobroma cacao HOM05D004170 ORTHO05D005976 5.7e-16 87.8 73 61.6
Cc03_g15010 Coffea canephora HOM05D004170 ORTHO05D005976 7.5e-16 87.4 73 61.6
RcHm_v2.0_Chr4g0412221 Rosa chinensis HOM05D004170 ORTHO05D005976 1.3e-15 86.7 73 61.6
RcHm_v2.0_Chr4g0412301 Rosa chinensis HOM05D004170 ORTHO05D005976 1.3e-15 86.7 73 61.6
Prupe.1G172700 Prunus persica HOM05D004170 ORTHO05D005976 1.7e-15 86.3 73 60.3
Sabra17G0021000 Salix brachista HOM05D004170 ORTHO05D005976 1.7e-15 86.3 73 60.3
Sed0021283 Sechium edule HOM05D004170 ORTHO05D005976 1.7e-15 86.3 73 60.3
Rhsim02G0075900 Rhododendron simsii HOM05D004170 ORTHO05D005976 2.2e-15 85.9 73 60.3
COL.COLO4_14420 Corchorus olitorius HOM05D004170 ORTHO05D005976 3.7e-15 85.1 73 61.6
Dinv44240 Davidia involucrata HOM05D004170 ORTHO05D005976 3.7e-15 85.1 73 61.6
MD03G1203000 Malus domestica HOM05D004170 ORTHO05D005976 3.7e-15 85.1 73 60.3
Manes.04G040300 Manihot esculenta HOM05D004170 ORTHO05D005976 3.7e-15 85.1 73 61.6
Nn6g32161 Nelumbo nucifera HOM05D004170 ORTHO05D005976 3.7e-15 85.1 73 63.0
Zm00001eb318310 Zea mays HOM05D004170 ORTHO05D005976 3.7e-15 85.1 82 54.9
MSTRG.27998 Avicennia marina HOM05D004170 ORTHO05D005976 4.8e-15 84.7 73 60.3
C05p23560 Brassica napus HOM05D004170 ORTHO05D005976 4.8e-15 84.7 68 66.2
FAN22G0324 Fragaria x ananassa HOM05D004170 ORTHO05D005976 4.8e-15 84.7 73 60.3
MBI08_g01805_MAGBIO Magnolia biondii HOM05D004170 ORTHO05D005976 4.8e-15 84.7 73 60.3
GSVIVG01010733001 Vitis vinifera HOM05D004170 ORTHO05D005976 4.8e-15 84.7 73 61.6
ATR0174G040 Amborella trichopoda HOM05D004170 ORTHO05D005976 6.3e-15 84.3 73 60.3
AUR62002598 Chenopodium quinoa HOM05D004170 ORTHO05D005976 6.3e-15 84.3 82 56.1
Peaxi162Scf00286g00334 Petunia axillaris HOM05D004170 ORTHO05D005976 6.3e-15 84.3 74 55.4
Migut.O00710 Erythranthe guttata HOM05D004170 ORTHO05D005976 8.2e-15 84.0 73 58.9
MD04G1022600 Malus domestica HOM05D004170 ORTHO05D005976 1.1e-14 83.6 73 58.9
Oeu027735.1 Olea europaea HOM05D004170 ORTHO05D005976 1.1e-14 83.6 73 58.9
Potri.017G033400 Populus trichocarpa HOM05D004170 ORTHO05D005976 1.1e-14 83.6 73 60.3
Aqoxy2G04112 Aquilegia oxysepala HOM05D004170 ORTHO05D005976 1.4e-14 83.2 79 55.7
Migut.N02002 Erythranthe guttata HOM05D004170 ORTHO05D005976 1.4e-14 83.2 73 58.9
Os09g0513700 Oryza sativa ssp. japonica HOM05D004170 ORTHO05D005976 1.4e-14 83.2 82 53.7
unitig_26.g9981 Utricularia gibba HOM05D004170 ORTHO05D005976 1.4e-14 83.2 73 60.3
Duzib093G1865 Durio zibethinus HOM05D004170 ORTHO05D005976 1.8e-14 82.8 73 57.5
Cfa015770 Carpinus fangiana HOM05D004170 ORTHO05D005976 2.4e-14 82.4 71 60.6
Ciclev10021004m.g Citrus clementina HOM05D004170 ORTHO05D005976 2.4e-14 82.4 73 58.9
ECA248G2970 Erigeron canadensis HOM05D000001 ORTHO05D009083 2.4e-14 82.4 71 62.0
vmacro15642 Vaccinium macrocarpon HOM05D004170 ORTHO05D005976 2.4e-14 82.4 73 58.9
FvH4_4g12800 Fragaria vesca HOM05D004170 ORTHO05D005976 3.1e-14 82.0 73 58.9
FAN12G0511 Fragaria x ananassa HOM05D004170 ORTHO05D005976 3.1e-14 82.0 73 58.9
CANSAT78G0391 Cannabis sativa HOM05D004170 ORTHO05D005976 4.1e-14 81.6 73 58.9
MELO3C006785.2 Cucumis melo HOM05D004170 ORTHO05D005976 4.1e-14 81.6 72 61.1
HanXRQChr16g0502641 Helianthus annuus HOM05D004170 ORTHO05D005976 4.1e-14 81.6 73 60.3
arahy.Tifrunner.gnm1.ann1.GESE75 Arachis hypogaea HOM05D004170 ORTHO05D005976 5.3e-14 81.3 73 58.9
arahy.Tifrunner.gnm1.ann1.VAWH7V Arachis hypogaea HOM05D004170 ORTHO05D005976 5.3e-14 81.3 73 58.9
FAN07G2475 Fragaria x ananassa HOM05D004170 ORTHO05D005976 5.3e-14 81.3 73 58.9
QL10p047503 Quercus lobata HOM05D004170 ORTHO05D005976 5.3e-14 81.3 73 57.5
CSS0008998 Camellia sinensis var. sinensis HOM05D004170 ORTHO05D005976 9.1e-14 80.5 73 58.9
Sc25g0001640 Simmondsia chinensis HOM05D004170 ORTHO05D005976 9.1e-14 80.5 73 58.9
Gohir.D09G164500 Gossypium hirsutum HOM05D004170 ORTHO05D005976 1.2e-13 80.1 73 57.5
AUR62030020 Chenopodium quinoa HOM05D004170 ORTHO05D005976 1.6e-13 79.7 71 59.2
Ciclev10020999m.g Citrus clementina HOM05D004170 ORTHO05D005976 1.6e-13 79.7 73 57.5
Glyma.18G296100 Glycine max HOM05D004170 ORTHO05D005976 1.6e-13 79.7 73 57.5
BolC5t31068H Brassica oleracea HOM05D004170 ORTHO05D005976 2.0e-13 79.3 68 66.2
Lj8C30T5 Lonicera japonica HOM05D004170 ORTHO05D005976 2.7e-13 79.0 86 53.5
Gohir.A09G168800 Gossypium hirsutum HOM05D004170 ORTHO05D005976 3.5e-13 78.6 73 56.2
Gorai.006G186300 Gossypium raimondii HOM05D004170 ORTHO05D005976 4.5e-13 78.2 73 56.2
TWI12G1326 Tripterygium wilfordii HOM05D004170 ORTHO05D005976 4.5e-13 78.2 72 56.9
CiPaw.01G102400 Carya illinoinensis HOM05D004170 ORTHO05D005976 5.9e-13 77.8 73 57.5
Lsat_1_v5_gn_1_71660 Lactuca sativa HOM05D004170 ORTHO05D005976 5.9e-13 77.8 73 57.5
PSO675G5023 Papaver somniferum HOM05D004170 ORTHO05D005976 5.9e-13 77.8 73 56.2
Ca_08074_v3 Cicer arietinum L. HOM05D003195 ORTHO05D003773 7.7e-13 77.4 73 56.2
Lalb_Chr17g0335931 Lupinus albus HOM05D004170 ORTHO05D005976 7.7e-13 77.4 73 56.2
Mapoly0009s0012 Marchantia polymorpha HOM05D004170 ORTHO05D005976 7.7e-13 77.4 73 54.8
SEGI_04703 Sequoiadendron giganteum HOM05D004170 ORTHO05D005976 7.7e-13 77.4 71 56.3
Solyc09g098390.3 Solanum lycopersicum HOM05D004170 ORTHO05D005976 7.7e-13 77.4 70 57.1
Sopen09g036320 Solanum pennellii HOM05D004170 ORTHO05D005976 7.7e-13 77.4 70 57.1
SMO167G0082 Selaginella moellendorffii HOM05D004170 ORTHO05D005976 1.0e-12 77.0 87 52.9
PGSC0003DMG400021605 Solanum tuberosum HOM05D004170 ORTHO05D005976 1.0e-12 77.0 73 53.4
CDE02G0576 Ceratophyllum demersum HOM05D004170 ORTHO05D005976 1.3e-12 76.6 73 53.4
Phvul.008G006500 Phaseolus vulgaris HOM05D004170 ORTHO05D005976 1.7e-12 76.3 73 56.2
AagrBONN_evm.TU.Sc2ySwM_368.2692 Anthoceros agrestis HOM05D004170 ORTHO05D005976 2.2e-12 75.9 91 44.0
VMungo1383G1615 Vigna mungo HOM05D004170 ORTHO05D005976 2.2e-12 75.9 72 56.9
Pp3c12_15180 Physcomitrium patens HOM05D004170 ORTHO05D005976 3.8e-12 75.1 86 50.0
Medtr7g082150 Medicago truncatula HOM05D004170 ORTHO05D005976 8.5e-12 73.9 73 53.4
Psat3g098520 Pisum sativum HOM05D004170 ORTHO05D005976 8.5e-12 73.9 73 53.4
TPR.G29080 Trifolium pratense HOM05D004170 ORTHO05D005976 8.5e-12 73.9 73 52.1
HPP92_028240 Vanilla planifolia HOM05D004170 ORTHO05D005976 8.5e-12 73.9 72 55.6
PSO017G0653 Papaver somniferum HOM05D004170 ORTHO05D005976 1.1e-11 73.6 67 53.7
Hund12229 Selenicereus undatus HOM05D004170 ORTHO05D005976 1.1e-11 73.6 103 43.7
Lj1g0005305 Lotus japonicus HOM05D004170 ORTHO05D005976 4.2e-11 71.6 73 52.1
SGA_v2.0_scaffold81G26074 Striga asiatica HOM05D004170 ORTHO05D005976 1.2e-10 70.1 81 51.9
TAR633G2752 Trochodendron aralioides HOM05D004170 ORTHO05D005976 1.2e-10 70.1 47 74.5
HPP92_002778 Vanilla planifolia HOM05D004170 ORTHO05D005976 1.6e-10 69.7 72 52.8
Glyma.08G366200 Glycine max HOM05D004170 ORTHO05D005976 3.6e-10 68.6 48 68.8
AagrBONN_evm.TU.Sc2ySwM_344.4993 Anthoceros agrestis HOM05D004170 ORTHO05D005976 6.1e-10 67.8 73 47.9
AagrBONN_evm.TU.Sc2ySwM_368.2693 Anthoceros agrestis HOM05D004170 ORTHO05D005976 6.1e-10 67.8 73 47.9
Cpa.g.sc2713.1 Carica papaya HOM05D004170 ORTHO05D005976 6.1e-10 67.8 50 64.0
BcaC02g08533 Brassica carinata HOM05D004170 ORTHO05D005976 1.4e-09 66.6 99 48.5
BolC2t09639H Brassica oleracea HOM05D004170 ORTHO05D005976 3.0e-09 65.5 73 49.3
CsaV3_3G015860 Cucumis sativus L. HOM05D004170 ORTHO05D005976 3.0e-09 65.5 56 58.9
ClCG05G007160 Citrullus lanatus HOM05D004170 ORTHO05D005976 2.0e-08 62.8 44 70.5
A02p27380 Brassica napus HOM05D004170 ORTHO05D040520 2.6e-08 62.4 79 53.2
BraA02t07766Z Brassica rapa HOM05D004170 ORTHO05D040520 2.6e-08 62.4 79 53.2
Nitab4.5_0000697g0030 Nicotiana tabacum HOM05D004170 ORTHO05D005976 1.3e-07 60.1 70 45.7
SMO347G0366 Selaginella moellendorffii HOM05D004170 ORTHO05D005976 2.4e-06 55.8 44 63.6
BcaB01g03389 Brassica carinata HOM05D004170 ORTHO05D005976 5.4e-06 54.7 56 53.6
Eucgr.H00407 Eucalyptus grandis HOM05D004170 ORTHO05D005976 5.4e-06 54.7 61 49.2
Eucgr.H00408 Eucalyptus grandis HOM05D004170 ORTHO05D005976 5.4e-06 54.7 61 49.2


User provided reference genes

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