Gene: PGSC0003DMG400021605

General Information

Structural Information

Species Solanum tuberosum
Gene Identifier PGSC0003DMG400021605
Transcript Identifier PGSC0003DMT400055636
Gene Type Coding gene
Location ST4.03ch09 : 61209372-61213985 : negative

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D004170
#Genes/#Species 169/94
Phylogenetic origin

ID ORTHO05D005976
#Genes/#Species 149/93
Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

pacid 37458002
id PGSC0003DMG400021605.v4.03
uniprot M1BY90

Descriptions

Short descriptions
Ortholog descriptions

Description U1 small nuclear ribonucleoprotein 70 kD

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0000398	IBA	GOA Database	mRNA splicing, via spliceosome

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003676	IEA	GOA Database	nucleic acid binding
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0003723	IEA	GOA Database	RNA binding
GO:0003729	IBA	GOA Database	mRNA binding
GO:0017069	IBA	GOA Database	snRNA binding
GO:0005515	ISO	PLAZA Integrative Orthology	protein binding	AT2G43370

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005634	IEA	GOA Database	nucleus
GO:0005689	IBA	GOA Database	U12-type spliceosomal complex
GO:0034693	ISO	PLAZA Integrative Orthology	U11/U12 snRNP	AT2G43370

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR000504	RNA recognition motif domain
IPR034146	snRNP35, RNA recognition motif
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
IPR035979	RNA-binding domain superfamily

Mapman id	Description
16.2.4.1.1	RNA processing.pre-mRNA splicing.U12-type-intron-specific minor spliceosome.U11 small nuclear ribonucleoprotein particle (snRNP).protein factor (U11-35K)