Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14858 Brassica carinata HOM05D003777 ORTHO05D004690 8.1e-36 153.3 82 100.0
A07p34190 Brassica napus HOM05D003777 ORTHO05D004690 1.7e-25 119.0 78 80.8
Thhalv10018246m.g Eutrema salsugineum HOM05D003777 ORTHO05D004690 1.7e-25 119.0 88 77.3
Sp5g22670 Schrenkiella parvula HOM05D003777 ORTHO05D004690 2.2e-25 118.6 91 74.7
BcaC08g46176 Brassica carinata HOM05D003777 ORTHO05D004690 6.4e-25 117.1 78 79.5
C06p42580 Brassica napus HOM05D003777 ORTHO05D004690 6.4e-25 117.1 78 79.5
BolC6t39181H Brassica oleracea HOM05D003777 ORTHO05D004690 6.4e-25 117.1 78 79.5
BcaB03g15368 Brassica carinata HOM05D003777 ORTHO05D004690 1.1e-24 116.3 91 73.6
BcaB03g15177 Brassica carinata HOM05D003777 ORTHO05D004690 1.9e-24 115.5 91 73.6
BcaC03g14865 Brassica carinata HOM05D003777 ORTHO05D004690 3.2e-24 114.8 80 80.0
A07p32470 Brassica napus HOM05D003777 ORTHO05D004690 6.0e-23 110.5 91 71.4
C06p38550 Brassica napus HOM05D003777 ORTHO05D004690 3.0e-22 108.2 91 70.3
AL2G26380 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 1.5e-21 105.9 88 72.7
AT1G67680 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 3.3e-21 104.8 88 70.5
Carub.0002s1406 Capsella rubella HOM05D003777 ORTHO05D004690 3.3e-21 104.8 89 70.8
AL2G26340 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 1.4e-19 99.4 66 81.8
CARHR060270 Cardamine hirsuta HOM05D003777 ORTHO05D004690 1.8e-19 99.0 64 75.0
Prupe.1G234800 Prunus persica HOM05D003777 ORTHO05D004690 3.4e-18 94.7 78 65.4
Thecc.02G272700 Theobroma cacao HOM05D003777 ORTHO05D004690 4.5e-18 94.4 81 61.7
Rhsim12G0035800 Rhododendron simsii HOM05D003777 ORTHO05D004690 5.8e-18 94.0 75 66.7
MD16G1110000 Malus domestica HOM05D003777 ORTHO05D004690 1.3e-17 92.8 78 64.1
ClCG05G026250 Citrullus lanatus HOM05D003777 ORTHO05D004690 2.2e-17 92.0 81 61.7
MD13G1110100 Malus domestica HOM05D003777 ORTHO05D004690 2.9e-17 91.7 78 62.8
GSVIVG01010320001 Vitis vinifera HOM05D003777 ORTHO05D004690 3.8e-17 91.3 74 66.2
Nitab4.5_0000492g0120 Nicotiana tabacum HOM05D003777 ORTHO05D004690 4.9e-17 90.9 75 65.3
vmacro01091 Vaccinium macrocarpon HOM05D003777 ORTHO05D004690 4.9e-17 90.9 73 65.8
Actinidia08096 Actinidia chinensis HOM05D003777 ORTHO05D004690 6.5e-17 90.5 75 66.7
Duzib268G0959 Durio zibethinus HOM05D003777 ORTHO05D004690 6.5e-17 90.5 81 60.5
Nitab4.5_0002026g0090 Nicotiana tabacum HOM05D003777 ORTHO05D004690 6.5e-17 90.5 75 64.0
Duzib248G0478 Durio zibethinus HOM05D003777 ORTHO05D004690 8.4e-17 90.1 84 57.1
FvH4_4g24580 Fragaria vesca HOM05D003777 ORTHO05D004690 1.1e-16 89.7 77 64.9
RcHm_v2.0_Chr4g0431561 Rosa chinensis HOM05D003777 ORTHO05D004690 1.1e-16 89.7 77 64.9
RcHm_v2.0_Chr4g0431581 Rosa chinensis HOM05D003777 ORTHO05D004690 1.1e-16 89.7 77 64.9
CAN.G487.1 Capsicum annuum HOM05D003777 ORTHO05D004690 1.4e-16 89.4 75 64.0
Potri.006G216400 Populus trichocarpa HOM05D003777 ORTHO05D004690 1.4e-16 89.4 63 68.3
Sabra06G0166800 Salix brachista HOM05D003777 ORTHO05D004690 1.4e-16 89.4 61 70.5
SHI17928 Sapria himalayana HOM05D003777 ORTHO05D004690 1.4e-16 89.4 75 61.3
Carub.0002s1402 Capsella rubella HOM05D003777 ORTHO05D004690 1.9e-16 89.0 73 65.8
Dinv11003 Davidia involucrata HOM05D003777 ORTHO05D004690 1.9e-16 89.0 75 65.3
FAN12G3799 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.9e-16 89.0 77 64.9
FAN17G2971 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.9e-16 89.0 76 65.8
Manes.12G016400 Manihot esculenta HOM05D003777 ORTHO05D004690 1.9e-16 89.0 63 68.3
Nitab4.5_0002757g0020 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.9e-16 89.0 75 65.3
THA.LOC104825526 Tarenaya hassleriana HOM05D003777 ORTHO05D004690 1.9e-16 89.0 77 63.6
DCAR_021624 Daucus carota HOM05D003777 ORTHO05D004690 2.5e-16 88.6 72 66.7
Dinv18168 Davidia involucrata HOM05D003777 ORTHO05D004690 2.5e-16 88.6 75 64.0
FAN07G0030 Fragaria x ananassa HOM05D003777 ORTHO05D004690 2.5e-16 88.6 76 65.8
Nn4g21997 Nelumbo nucifera HOM05D003777 ORTHO05D004690 3.2e-16 88.2 63 68.3
Peaxi162Scf00029g02527 Petunia axillaris HOM05D003777 ORTHO05D004690 3.2e-16 88.2 75 64.0
CiPaw.05G173500 Carya illinoinensis HOM05D003777 ORTHO05D004690 4.2e-16 87.8 76 61.8
TPR.G17105 Trifolium pratense HOM05D003777 ORTHO05D004690 4.2e-16 87.8 78 60.3
Cpa.g.sc86.2 Carica papaya HOM05D003777 ORTHO05D004690 5.5e-16 87.4 63 66.7
Ciclev10030955m.g Citrus clementina HOM05D003777 ORTHO05D004690 5.5e-16 87.4 64 67.2
Gohir.A05G311500 Gossypium hirsutum HOM05D003777 ORTHO05D004690 5.5e-16 87.4 63 66.7
Gohir.D05G312600 Gossypium hirsutum HOM05D003777 ORTHO05D004690 5.5e-16 87.4 63 66.7
Lj4g0007172 Lotus japonicus HOM05D003777 ORTHO05D004690 5.5e-16 87.4 78 59.0
Phvul.002G176900 Phaseolus vulgaris HOM05D003777 ORTHO05D004690 5.5e-16 87.4 74 62.2
VMungo0251G0828 Vigna mungo HOM05D003777 ORTHO05D004690 5.5e-16 87.4 74 62.2
MSTRG.12471 Avicennia marina HOM05D003777 ORTHO05D004690 7.1e-16 87.0 51 80.4
DCAR_021625 Daucus carota HOM05D003777 ORTHO05D004690 7.1e-16 87.0 72 65.3
Lalb_Chr12g0206431 Lupinus albus HOM05D003777 ORTHO05D004690 7.1e-16 87.0 83 61.4
Lalb_Chr12g0206451 Lupinus albus HOM05D003777 ORTHO05D004690 7.1e-16 87.0 83 61.4
SEGI_14731 Sequoiadendron giganteum HOM05D003777 ORTHO05D004690 7.1e-16 87.0 78 60.3
TWI36G1566 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 7.1e-16 87.0 61 68.9
TWI75G0300 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 7.1e-16 87.0 61 68.9
CsaV3_5G030580 Cucumis sativus L. HOM05D003777 ORTHO05D004690 9.3e-16 86.7 81 58.0
AT1G67650 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 1.2e-15 86.3 89 62.9
CANSAT01G1767 Cannabis sativa HOM05D003777 ORTHO05D004690 1.2e-15 86.3 57 71.9
Ca_18071_v3 Cicer arietinum L. HOM05D003777 ORTHO05D004690 1.2e-15 86.3 78 57.7
Gorai.009G334100 Gossypium raimondii HOM05D003777 ORTHO05D004690 1.2e-15 86.3 63 66.7
Lj2C633G4 Lonicera japonica HOM05D003777 ORTHO05D004690 1.2e-15 86.3 66 71.2
QL03p055332 Quercus lobata HOM05D003777 ORTHO05D004690 1.2e-15 86.3 61 67.2
TAR374G0928 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.2e-15 86.3 66 68.2
TAR374G1267 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.2e-15 86.3 66 68.2
Aqoxy5G03557 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.6e-15 85.9 74 60.8
CSS0004768 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.6e-15 85.9 57 73.7
CSS0034811 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.6e-15 85.9 57 73.7
CDE07G0923 Ceratophyllum demersum HOM05D003777 ORTHO05D004690 1.6e-15 85.9 72 62.5
Hma1.2p1_0079F.1_g041650 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 1.6e-15 85.9 75 61.3
Sed0021346 Sechium edule HOM05D003777 ORTHO05D004690 1.6e-15 85.9 76 57.9
Atru.chr11.2223 Acer truncatum HOM05D003777 ORTHO05D004690 2.1e-15 85.5 51 76.5
arahy.Tifrunner.gnm1.ann1.SED4J7 Arachis hypogaea HOM05D003777 ORTHO05D004690 2.1e-15 85.5 77 58.4
Eucgr.B03455 Eucalyptus grandis HOM05D003777 ORTHO05D004690 2.1e-15 85.5 76 57.9
FAN22G1648 Fragaria x ananassa HOM05D003777 ORTHO05D004690 2.1e-15 85.5 76 64.5
Lalb_Chr07g0187251 Lupinus albus HOM05D003777 ORTHO05D004690 2.1e-15 85.5 83 59.0
Cfa009302 Carpinus fangiana HOM05D003777 ORTHO05D004690 2.7e-15 85.1 61 65.6
Oeu015952.1 Olea europaea HOM05D003777 ORTHO05D004690 2.7e-15 85.1 84 54.8
Psat7g080080 Pisum sativum HOM05D003777 ORTHO05D004690 2.7e-15 85.1 75 60.0
Sed0005823 Sechium edule HOM05D003777 ORTHO05D004690 2.7e-15 85.1 61 68.9
MELO3C011898.2 Cucumis melo HOM05D003777 ORTHO05D004690 3.5e-15 84.7 69 65.2
PGR102G0273 Punica granatum HOM05D003777 ORTHO05D004690 3.5e-15 84.7 64 70.3
TAR622G1358 Trochodendron aralioides HOM05D003777 ORTHO05D004690 3.5e-15 84.7 78 60.3
Actinidia30683 Actinidia chinensis HOM05D003777 ORTHO05D004690 4.6e-15 84.3 75 62.7
Nitab4.5_0001925g0190 Nicotiana tabacum HOM05D003777 ORTHO05D004690 4.6e-15 84.3 72 65.3
Solyc11g062270.2 Solanum lycopersicum HOM05D003777 ORTHO05D004690 4.6e-15 84.3 75 61.3
Sopen11g024250 Solanum pennellii HOM05D003777 ORTHO05D004690 4.6e-15 84.3 75 61.3
Aa31LG4G12090 Aethionema arabicum HOM05D003777 ORTHO05D004690 6.0e-15 84.0 55 72.7
ATR0824G106 Amborella trichopoda HOM05D003777 ORTHO05D004690 6.0e-15 84.0 77 58.4
ECA233G1683 Erigeron canadensis HOM05D003777 ORTHO05D004690 6.0e-15 84.0 51 78.4
Glyma.05G144700 Glycine max HOM05D003777 ORTHO05D004690 6.0e-15 84.0 64 65.6
SGA_v2.0_scaffold247G44863 Striga asiatica HOM05D003777 ORTHO05D004690 6.0e-15 84.0 81 60.5
arahy.Tifrunner.gnm1.ann1.9WV3XJ Arachis hypogaea HOM05D003777 ORTHO05D004690 7.9e-15 83.6 77 57.1
Lsat_1_v5_gn_2_96961 Lactuca sativa HOM05D003777 ORTHO05D004690 7.9e-15 83.6 84 54.8
Medtr8g079990 Medicago truncatula HOM05D003777 ORTHO05D004690 7.9e-15 83.6 70 61.4
arahy.Tifrunner.gnm1.ann1.238UV6 Arachis hypogaea HOM05D003777 ORTHO05D004690 1.0e-14 83.2 77 57.1
Ah.10g034950 Amaranthus hybridus HOM05D003777 ORTHO05D004690 1.8e-14 82.4 63 63.5
HanXRQChr04g0126141 Helianthus annuus HOM05D003777 ORTHO05D004690 1.8e-14 82.4 52 78.8
Hund25014 Selenicereus undatus HOM05D003777 ORTHO05D004690 1.8e-14 82.4 75 56.0
Zm00001eb145240 Zea mays HOM05D003777 ORTHO05D004690 1.8e-14 82.4 88 55.7
EL10Ac9g22111 Beta vulgaris HOM05D003777 ORTHO05D004690 2.3e-14 82.0 79 55.7
AUR62035656 Chenopodium quinoa HOM05D003777 ORTHO05D004690 3.0e-14 81.6 102 51.0
Manes.13G014300 Manihot esculenta HOM05D003777 ORTHO05D004690 3.0e-14 81.6 58 69.0
AUR62017151 Chenopodium quinoa HOM05D003777 ORTHO05D004690 5.1e-14 80.9 79 58.2
Glyma.08G101100 Glycine max HOM05D003777 ORTHO05D004690 5.1e-14 80.9 64 64.1
PSO063G1619 Papaver somniferum HOM05D003777 ORTHO05D004690 5.1e-14 80.9 54 79.6
arahy.Tifrunner.gnm1.ann1.35MH8V Arachis hypogaea HOM05D003777 ORTHO05D004690 6.7e-14 80.5 73 57.5
MBI11_g31858_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 8.7e-14 80.1 75 58.7
AUR62017138 Chenopodium quinoa HOM05D003777 ORTHO05D004690 1.5e-13 79.3 80 57.5
Os01g0889000 Oryza sativa ssp. japonica HOM05D003777 ORTHO05D004690 1.9e-13 79.0 56 69.6
PSO170G4787 Papaver somniferum HOM05D003777 ORTHO05D004690 2.5e-13 78.6 86 62.8
PGSC0003DMG400024126 Solanum tuberosum HOM05D003777 ORTHO05D004690 3.3e-13 78.2 61 63.9
BolC2t08468H Brassica oleracea HOM05D003777 ORTHO05D004690 9.6e-13 76.6 56 80.4
HPP92_012793 Vanilla planifolia HOM05D003777 ORTHO05D004690 1.6e-12 75.9 78 60.3
Hma1.2p1_0075F.1_g039220 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 2.1e-12 75.5 70 60.0
Sc04g0009890 Simmondsia chinensis HOM05D003777 ORTHO05D004690 2.1e-12 75.5 61 60.7
C02p23330 Brassica napus HOM05D003777 ORTHO05D004690 2.8e-12 75.1 56 78.6
Pp3c19_7700 Physcomitrium patens HOM05D003777 ORTHO05D004690 6.2e-12 73.9 59 66.1
COL.COLO4_23602 Corchorus olitorius HOM05D003777 ORTHO05D004690 1.8e-11 72.4 62 64.5
Mapoly0007s0138 Marchantia polymorpha HOM05D003777 ORTHO05D004690 3.1e-11 71.6 65 53.8
SMO356G0370 Selaginella moellendorffii HOM05D003777 ORTHO05D004690 6.9e-11 70.5 94 46.8
CBR_g26341 Chara braunii HOM05D003777 ORTHO05D004690 5.8e-10 67.4 46 67.4
unitig_744.g24046 Utricularia gibba HOM05D003777 ORTHO05D004690 8.4e-09 63.5 83 49.4
ECA238G3243 Erigeron canadensis HOM05D003777 ORTHO05D004690 2.5e-08 62.0 42 71.4
PRCOL_00006597 Prasinoderma coloniale HOM05D003777 ORTHO05D004690 3.9e-06 54.7 80 42.5
MCO13G157 Micromonas commoda HOM05D003777 ORTHO05D004690 6.7e-06 53.9 46 58.7


User provided reference genes

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