Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14535 Brassica carinata HOM05D004189 ORTHO05D004092 3.0e-308 1061.2 612 100.0
C02p19870 Brassica napus HOM05D004189 ORTHO05D004092 1.8e-297 1025.4 618 96.4
BolC2t08122H Brassica oleracea HOM05D004189 ORTHO05D004092 1.8e-297 1025.4 618 96.4
A02p11890 Brassica napus HOM05D004189 ORTHO05D004092 1.2e-229 800.0 609 81.1
BcaB05g21947 Brassica carinata HOM05D004189 ORTHO05D004092 6.6e-191 671.4 651 68.7
Sp6g14580 Schrenkiella parvula HOM05D004189 ORTHO05D004092 1.2e-144 517.7 736 56.7
BraA02t06255Z Brassica rapa HOM05D004189 ORTHO05D004092 3.6e-144 516.2 702 55.6
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 4.3e-97 359.8 690 43.0
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 1.3e-93 348.2 694 41.6
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.1e-87 328.6 684 42.3
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 4.4e-86 323.2 708 41.0
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 5.8e-86 322.8 658 41.9
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 5.8e-86 322.8 658 41.9
Thhalv10015427m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 3.5e-83 313.5 878 40.1
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 1.0e-82 312.0 695 44.9
BcaC01g06182 Brassica carinata HOM05D004189 ORTHO05D004092 3.3e-81 307.0 677 45.3
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 9.5e-81 305.4 658 40.7
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 3.6e-80 303.5 643 41.1
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 1.4e-79 301.6 678 38.8
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 3.4e-78 297.0 682 45.0
C03p18370 Brassica napus HOM05D004189 ORTHO05D004092 4.9e-77 293.1 633 43.4
BraA03t10863Z Brassica rapa HOM05D004189 ORTHO05D004092 1.1e-76 292.0 664 45.2
BolC3t14234H Brassica oleracea HOM05D004189 ORTHO05D004092 1.9e-76 291.2 659 42.8
Carub.0008s1241 Capsella rubella HOM05D004189 ORTHO05D004092 4.1e-76 290.0 744 41.4
BcaB01g04200 Brassica carinata HOM05D004189 ORTHO05D004092 2.5e-73 280.8 679 44.3
CARHR265290 Cardamine hirsuta HOM05D004189 ORTHO05D004092 4.9e-69 266.5 769 39.3
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 7.1e-68 262.7 671 39.0
AT5G52310 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 4.0e-63 246.9 698 38.3
AL8G26710 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 6.2e-56 223.0 756 37.0
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 5.3e-47 193.4 650 32.2
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 1.5e-46 191.8 652 32.1
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 2.4e-44 184.5 642 32.7
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 1.0e-42 179.1 657 31.2
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 1.8e-42 178.3 652 33.6
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 6.7e-42 176.4 650 32.0
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 1.1e-39 169.1 656 31.7
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 2.4e-39 167.9 666 32.9
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 1.5e-38 165.2 668 31.0
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 7.1e-36 156.4 697 37.4
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 6.0e-35 153.3 624 30.3
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 6.0e-35 153.3 648 30.2
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 2.2e-29 134.8 563 34.8
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 7.9e-27 126.3 643 31.6
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 2.2e-24 118.2 543 32.2
BcaB05g21948 Brassica carinata HOM05D000139 ORTHO05D000103 1.2e-22 112.5 78 83.3
AL271U10030 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 2.2e-13 81.6 333 28.8
CARHR119590 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.2e-11 75.9 109 47.7
CARHR259130 Cardamine hirsuta HOM05D004189 ORTHO05D004092 3.1e-07 61.2 114 43.0


User provided reference genes

Program Settings