Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13891 Brassica carinata HOM05D017283 ORTHO05D017552 1.2e-29 132.5 68 100.0
BolC2t07164H Brassica oleracea HOM05D017283 ORTHO05D017552 1.7e-26 122.1 66 97.0
Sp1g14130 Schrenkiella parvula HOM05D000133 ORTHO05D005407 4.7e-21 104.0 65 81.5
Carub.0001s1561 Capsella rubella HOM05D000133 ORTHO05D005407 1.4e-20 102.4 65 81.5
BcaC07g41477 Brassica carinata HOM05D000133 ORTHO05D005407 3.0e-20 101.3 65 78.5
BraA06t24359Z Brassica rapa HOM05D000133 ORTHO05D005407 5.2e-20 100.5 65 78.5
CARHR016340 Cardamine hirsuta HOM05D009656 ORTHO05D017552 5.2e-20 100.5 66 77.3
Thhalv10008533m.g Eutrema salsugineum HOM05D000133 ORTHO05D005407 6.8e-20 100.1 65 78.5
A09p61150 Brassica napus HOM05D000133 ORTHO05D005407 1.2e-19 99.4 65 76.9
BraA09t41489Z Brassica rapa HOM05D000133 ORTHO05D005407 1.2e-19 99.4 65 76.9
C08p44750 Brassica napus HOM05D000133 ORTHO05D005407 1.5e-19 99.0 65 75.4
BolC8t52021H Brassica oleracea HOM05D000133 ORTHO05D005407 1.5e-19 99.0 65 75.4
AL1G27970 Arabidopsis lyrata HOM05D000133 ORTHO05D005407 2.6e-19 98.2 65 75.4
AT1G15820 Arabidopsis thaliana HOM05D000133 ORTHO05D005407 2.6e-19 98.2 65 76.9
A06p11890 Brassica napus HOM05D000133 ORTHO05D005407 4.4e-19 97.4 65 75.4
Aa31LG7G410 Aethionema arabicum HOM05D000133 ORTHO05D005407 2.2e-18 95.1 66 75.8
BcaC07g38795 Brassica carinata HOM05D000133 ORTHO05D005407 2.2e-18 95.1 65 75.4
C05p14070 Brassica napus HOM05D000133 ORTHO05D005407 2.2e-18 95.1 65 73.8
C08p17310 Brassica napus HOM05D000133 ORTHO05D005407 2.2e-18 95.1 65 75.4
BolC5t30138H Brassica oleracea HOM05D000133 ORTHO05D005407 2.2e-18 95.1 65 73.8
BolC8t49357H Brassica oleracea HOM05D000133 ORTHO05D005407 2.2e-18 95.1 65 75.4
A08p31490 Brassica napus HOM05D000133 ORTHO05D005407 8.3e-18 93.2 66 75.8
BraA08t35071Z Brassica rapa HOM05D000133 ORTHO05D005407 8.3e-18 93.2 66 75.8
BcaC04g18785 Brassica carinata HOM05D017283 ORTHO05D017552 1.6e-16 89.0 46 97.8
THA.LOC104808189 Tarenaya hassleriana HOM05D000133 ORTHO05D005407 2.0e-16 88.6 66 68.2
C07p08990 Brassica napus HOM05D017283 ORTHO05D017552 7.7e-16 86.7 46 95.7
C09p66270 Brassica napus HOM05D017283 ORTHO05D017552 7.7e-16 86.7 46 95.7
BolC7t41310H Brassica oleracea HOM05D017283 ORTHO05D017552 7.7e-16 86.7 46 95.7
C09p57060 Brassica napus HOM05D017283 ORTHO05D017552 1.0e-15 86.3 46 95.7
THA.LOC104812448 Tarenaya hassleriana HOM05D000133 ORTHO05D005407 1.2e-13 79.3 66 63.6
Potri.001G210000 Populus trichocarpa HOM05D000133 ORTHO05D005407 1.8e-12 75.5 66 62.1
Lalb_Chr10g0097711 Lupinus albus HOM05D000133 ORTHO05D005407 3.0e-12 74.7 65 58.5
COL.COLO4_33854 Corchorus olitorius HOM05D000133 ORTHO05D005407 4.0e-12 74.3 67 59.7
Potri.003G020400 Populus trichocarpa HOM05D000133 ORTHO05D005407 6.8e-12 73.6 66 62.1
Sabra01G0162200 Salix brachista HOM05D000133 ORTHO05D005407 6.8e-12 73.6 66 60.6
Cfa005626 Carpinus fangiana HOM05D000133 ORTHO05D005407 1.5e-11 72.4 67 61.2
Eucgr.G00777 Eucalyptus grandis HOM05D000133 ORTHO05D005407 2.0e-11 72.0 70 57.1
Gohir.D02G196000 Gossypium hirsutum HOM05D000133 ORTHO05D005407 2.0e-11 72.0 68 58.8
Gorai.005G219000 Gossypium raimondii HOM05D000133 ORTHO05D005407 2.0e-11 72.0 68 58.8
DCAR_021849 Daucus carota HOM05D000133 ORTHO05D005407 2.6e-11 71.6 65 56.9
Haze_10642 Corylus avellana HOM05D000133 ORTHO05D005407 4.4e-11 70.9 68 60.3
Gohir.A03G172800 Gossypium hirsutum HOM05D000133 ORTHO05D005407 4.4e-11 70.9 68 57.4
Psat1g216920 Pisum sativum HOM05D000133 ORTHO05D005407 4.4e-11 70.9 67 58.2
Manes.14G167100 Manihot esculenta HOM05D000133 ORTHO05D005407 5.7e-11 70.5 68 54.4
Medtr2g008610 Medicago truncatula HOM05D000133 ORTHO05D005407 1.7e-10 68.9 68 55.9
VMungo0251G0676 Vigna mungo HOM05D000133 ORTHO05D005407 1.7e-10 68.9 65 64.6
Phvul.002G207500 Phaseolus vulgaris HOM05D000133 ORTHO05D005407 2.8e-10 68.2 65 63.1
CANSAT11G2240 Cannabis sativa HOM05D000133 ORTHO05D005407 3.7e-10 67.8 68 57.4
CiPaw.06G152400 Carya illinoinensis HOM05D000133 ORTHO05D005407 3.7e-10 67.8 68 60.3
Thecc.02G141900 Theobroma cacao HOM05D000133 ORTHO05D005407 3.7e-10 67.8 65 56.9
Eucgr.I02677 Eucalyptus grandis HOM05D000133 ORTHO05D005407 4.8e-10 67.4 67 53.7
Nitab4.5_0002865g0050 Nicotiana tabacum HOM05D000133 ORTHO05D005407 4.8e-10 67.4 65 53.8
Ca_00127_v3 Cicer arietinum L. HOM05D000133 ORTHO05D005407 6.3e-10 67.0 68 55.9
PGR042G1882 Punica granatum HOM05D000133 ORTHO05D005407 6.3e-10 67.0 66 54.5
ClCG08G006910 Citrullus lanatus HOM05D000133 ORTHO05D005407 8.3e-10 66.6 65 56.9
Dinv24206 Davidia involucrata HOM05D000133 ORTHO05D005407 8.3e-10 66.6 67 53.7
FAN13G0572 Fragaria x ananassa HOM05D000133 ORTHO05D005407 8.3e-10 66.6 70 55.7
Nitab4.5_0003434g0030 Nicotiana tabacum HOM05D000133 ORTHO05D005407 8.3e-10 66.6 69 59.4
TPR.G13606 Trifolium pratense HOM05D000133 ORTHO05D005407 8.3e-10 66.6 67 53.7
TAR625G0473 Trochodendron aralioides HOM05D000133 ORTHO05D005407 8.3e-10 66.6 67 55.2
Cpa.g.sc42.88 Carica papaya HOM05D000133 ORTHO05D005407 1.1e-09 66.2 66 56.1
TAR381G1555 Trochodendron aralioides HOM05D000133 ORTHO05D005407 1.1e-09 66.2 67 56.7
arahy.Tifrunner.gnm1.ann1.JVEI5Y Arachis hypogaea HOM05D000133 ORTHO05D005407 1.4e-09 65.9 66 54.5
Lj9A320T29 Lonicera japonica HOM05D000133 ORTHO05D005407 1.4e-09 65.9 69 52.2
Nitab4.5_0002865g0060 Nicotiana tabacum HOM05D000133 ORTHO05D005407 1.4e-09 65.9 69 58.0
arahy.Tifrunner.gnm1.ann1.4KW7H9 Arachis hypogaea HOM05D000133 ORTHO05D005407 1.8e-09 65.5 66 54.5
Duzib248G1224 Durio zibethinus HOM05D000133 ORTHO05D005407 1.8e-09 65.5 67 49.3
Lju1163A0T46 Lonicera japonica HOM05D000133 ORTHO05D005407 1.8e-09 65.5 69 52.2
CiPaw.05G037900 Carya illinoinensis HOM05D000133 ORTHO05D005407 2.4e-09 65.1 68 51.5
Oeu055366.1 Olea europaea HOM05D000133 ORTHO05D005407 2.4e-09 65.1 71 56.3
TWI14G1125 Tripterygium wilfordii HOM05D000133 ORTHO05D005407 2.4e-09 65.1 66 56.1
Glyma.08G180000 Glycine max HOM05D000133 ORTHO05D005407 3.1e-09 64.7 69 53.6
Peaxi162Scf00001g00212 Petunia axillaris HOM05D000133 ORTHO05D005407 3.1e-09 64.7 69 58.0
SGA_v2.0_scaffold332G48955 Striga asiatica HOM05D000133 ORTHO05D005407 3.1e-09 64.7 65 55.4
Glyma.08G074000 Glycine max HOM05D000133 ORTHO05D005407 4.1e-09 64.3 67 59.7
HanXRQChr16g0514061 Helianthus annuus HOM05D000133 ORTHO05D005407 4.1e-09 64.3 68 54.4
Prupe.1G557800 Prunus persica HOM05D000133 ORTHO05D005407 4.1e-09 64.3 70 55.7
RcHm_v2.0_Chr7g0226291 Rosa chinensis HOM05D000133 ORTHO05D005407 4.1e-09 64.3 69 55.1
CSS0010636 Camellia sinensis var. sinensis HOM05D000133 ORTHO05D005407 5.4e-09 63.9 69 53.6
Gohir.A04G112800 Gossypium hirsutum HOM05D000133 ORTHO05D005407 5.4e-09 63.9 68 51.5
Lalb_Chr20g0123081 Lupinus albus HOM05D000133 ORTHO05D005407 5.4e-09 63.9 65 55.4
Solyc01g105050.3 Solanum lycopersicum HOM05D000133 ORTHO05D005407 7.0e-09 63.5 65 55.4
Sopen01g047580 Solanum pennellii HOM05D000133 ORTHO05D005407 7.0e-09 63.5 65 55.4
Ah.14g085470 Amaranthus hybridus HOM05D000133 ORTHO05D005407 9.1e-09 63.2 66 48.5
Glyma.15G052400 Glycine max HOM05D000133 ORTHO05D005407 1.2e-08 62.8 68 52.9
Nitab4.5_0003434g0050 Nicotiana tabacum HOM05D000133 ORTHO05D005407 1.2e-08 62.8 69 55.1
FvH4_5g30940 Fragaria vesca HOM05D000133 ORTHO05D005407 1.6e-08 62.4 68 51.5
FAN08G1713 Fragaria x ananassa HOM05D000133 ORTHO05D005407 1.6e-08 62.4 68 51.5
FAN18G3012 Fragaria x ananassa HOM05D000133 ORTHO05D005407 1.6e-08 62.4 68 51.5
PGSC0003DMG400012590 Solanum tuberosum HOM05D000133 ORTHO05D005407 1.6e-08 62.4 65 55.4
TWI59G0207 Tripterygium wilfordii HOM05D000133 ORTHO05D005407 1.6e-08 62.4 67 50.7
ECA234G1650 Erigeron canadensis HOM05D000133 ORTHO05D005407 2.0e-08 62.0 65 55.4
Hma1.2p1_1341F.1_g276860 Hydrangea macrophylla HOM05D000133 ORTHO05D005407 2.0e-08 62.0 69 47.8
GSVIVG01029789001 Vitis vinifera HOM05D000133 ORTHO05D005407 2.0e-08 62.0 67 52.2
Lsat_1_v5_gn_5_107040 Lactuca sativa HOM05D000133 ORTHO05D005407 2.7e-08 61.6 65 53.8
MD08G1220900 Malus domestica HOM05D000133 ORTHO05D005407 2.7e-08 61.6 69 55.1
Nn1g05280 Nelumbo nucifera HOM05D000133 ORTHO05D005407 2.7e-08 61.6 67 52.2
CAN.G523.87 Capsicum annuum HOM05D000133 ORTHO05D005407 3.5e-08 61.2 68 48.5
Ciclev10029116m.g Citrus clementina HOM05D000133 ORTHO05D005407 3.5e-08 61.2 65 53.8
HanXRQChr03g0066961 Helianthus annuus HOM05D000133 ORTHO05D005407 3.5e-08 61.2 65 49.2
Oeu038295.1 Olea europaea HOM05D000133 ORTHO05D005407 4.5e-08 60.8 67 56.7
CAN.G523.84 Capsicum annuum HOM05D000133 ORTHO05D005407 5.9e-08 60.5 89 46.1
MBI15_g00879_MAGBIO Magnolia biondii HOM05D000133 ORTHO05D005407 5.9e-08 60.5 64 51.6
Sed0022231 Sechium edule HOM05D000133 ORTHO05D005407 5.9e-08 60.5 65 49.2
PGSC0003DMG400012591 Solanum tuberosum HOM05D000133 ORTHO05D005407 5.9e-08 60.5 69 53.6
VMungo0540G0283 Vigna mungo HOM05D000133 ORTHO05D005407 5.9e-08 60.5 66 51.5
MSTRG.5263 Avicennia marina HOM05D000133 ORTHO05D005407 7.7e-08 60.1 69 50.7
Lj6g0003994 Lotus japonicus HOM05D000133 ORTHO05D005407 7.7e-08 60.1 67 53.7
MELO3C008358.2 Cucumis melo HOM05D000133 ORTHO05D005407 1.0e-07 59.7 65 49.2
HanXRQChr10g0295961 Helianthus annuus HOM05D000133 ORTHO05D005407 1.0e-07 59.7 65 53.8
QL11p019860 Quercus lobata HOM05D000133 ORTHO05D005407 1.0e-07 59.7 66 59.1
CsaV3_1G019610 Cucumis sativus L. HOM05D000133 ORTHO05D005407 1.3e-07 59.3 67 46.3
CsaV3_6G005340 Cucumis sativus L. HOM05D000133 ORTHO05D005407 1.3e-07 59.3 67 46.3
Sed0005610 Sechium edule HOM05D000133 ORTHO05D005407 1.3e-07 59.3 65 46.2
Solyc01g105030.3 Solanum lycopersicum HOM05D000133 ORTHO05D005407 1.3e-07 59.3 69 53.6
Lj5A241G62 Lonicera japonica HOM05D000133 ORTHO05D005407 2.3e-07 58.5 67 52.2
Nn5g29040 Nelumbo nucifera HOM05D000133 ORTHO05D017552 2.3e-07 58.5 69 53.6
Phvul.006G207300 Phaseolus vulgaris HOM05D000133 ORTHO05D005407 2.9e-07 58.2 66 50.0
PSO541G4447 Papaver somniferum HOM05D000133 ORTHO05D005407 3.8e-07 57.8 64 50.0
Rhsim11G0135900 Rhododendron simsii HOM05D000133 ORTHO05D005407 3.8e-07 57.8 68 50.0
Atru.chr6.1130 Acer truncatum HOM05D000133 ORTHO05D005407 5.0e-07 57.4 65 52.3
Gohir.D04G154000 Gossypium hirsutum HOM05D000133 ORTHO05D005407 5.0e-07 57.4 68 48.5
Gorai.012G141200 Gossypium raimondii HOM05D000133 ORTHO05D005407 5.0e-07 57.4 68 48.5
Sopen01g047560 Solanum pennellii HOM05D000133 ORTHO05D005407 5.0e-07 57.4 69 52.2
PSO133G0005 Papaver somniferum HOM05D000133 ORTHO05D005407 6.6e-07 57.0 64 50.0
SalBow5G4065 Salvia bowleyana HOM05D000133 ORTHO05D005407 6.6e-07 57.0 67 47.8
HPP92_002333 Vanilla planifolia HOM05D000133 ORTHO05D005407 8.6e-07 56.6 65 49.2
Oeu037187.1 Olea europaea HOM05D000133 ORTHO05D005407 1.1e-06 56.2 65 49.2
unitig_8.g3473 Utricularia gibba HOM05D000133 ORTHO05D005407 1.1e-06 56.2 65 44.6
CSS0014245 Camellia sinensis var. sinensis HOM05D000133 ORTHO05D005407 4.2e-06 54.3 69 47.8
Migut.B00625 Erythranthe guttata HOM05D000133 ORTHO05D005407 4.2e-06 54.3 67 46.3
Migut.N01061 Erythranthe guttata HOM05D000133 ORTHO05D005407 4.2e-06 54.3 67 49.3
Sc18g0003750 Simmondsia chinensis HOM05D000133 ORTHO05D005407 4.2e-06 54.3 66 48.5
CDE10G0238 Ceratophyllum demersum HOM05D000133 ORTHO05D034250 5.5e-06 53.9 66 53.0
ECA240G0768 Erigeron canadensis HOM05D000133 ORTHO05D005407 5.5e-06 53.9 65 47.7
MD15G1411600 Malus domestica HOM05D000133 ORTHO05D005407 5.5e-06 53.9 69 53.6
CDE10G0692 Ceratophyllum demersum HOM05D000133 ORTHO05D005407 9.5e-06 53.1 66 47.0


User provided reference genes

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