Gene: AT1G15820
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G15820
- Transcript Identifier AT1G15820.1
- Gene Type Coding gene
- Location Chr1 : 5446685-5447676 : negative
Gene Family Information
- ID HOM05D000133
- #Genes/#Species 2666/99
- Phylogenetic origin
- ID ORTHO05D005407
- #Genes/#Species 158/96
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT1G15820.1
- symbol LHCB6
- Alias CP24
- uniprot Q9LMQ2
Descriptions
- Description light harvesting complex photosystem II subunit 6
- Computational description light harvesting complex photosystem II subunit 6 (LHCB6); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, nonphotochemical quenching; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 6 (TAIR:AT1G19150.1); Has 2316 Blast hits to 2191 proteins in 220 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1959; Viruses - 0; Other Eukaryotes - 355 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0015979 | IEA | GOA Database | photosynthesis | |
| GO:0015979 | IMP NAS | Gene Ontology | photosynthesis | 1 2 |
| GO:0018298 | IEA | GOA Database | protein-chromophore linkage | |
| GO:0009765 | IEA | GOA Database | photosynthesis, light harvesting | |
| GO:0009765 | IEA | InterPro | photosynthesis, light harvesting | |
| GO:0010196 | IMP | Gene Ontology | nonphotochemical quenching | 2 |
| GO:0009416 | IBA | Gene Ontology | response to light stimulus | 3 |
| GO:0009768 | IBA | Gene Ontology | photosynthesis, light harvesting in photosystem I | 3 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016168 | IEA | GOA Database | chlorophyll binding | |
| GO:0016168 | ISS | Gene Ontology | chlorophyll binding | |
| GO:0003729 | IDA | Gene Ontology | mRNA binding | 4 |
| GO:0019904 | IPI | GOA Database | protein domain specific binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009507 | IDA IEA | GOA Database | chloroplast | |
| GO:0009507 | HDA ISM | Gene Ontology | chloroplast | 5 |
| GO:0010287 | IDA | GOA Database | plastoglobule | |
| GO:0009941 | IDA | GOA Database | chloroplast envelope | |
| GO:0009941 | HDA | Gene Ontology | chloroplast envelope | 6 |
| GO:0009535 | IDA IEA | GOA Database | chloroplast thylakoid membrane | |
| GO:0009535 | HDA | Gene Ontology | chloroplast thylakoid membrane | 7 |
| GO:0009534 | IDA | GOA Database | chloroplast thylakoid | |
| GO:0009534 | HDA | Gene Ontology | chloroplast thylakoid | 8 |
| GO:0009523 | IEA | GOA Database | photosystem II | |
| GO:0009522 | IEA | GOA Database | photosystem I | |
| GO:0009536 | IEA | GOA Database | plastid | |
| GO:0009579 | IEA | GOA Database | thylakoid | |
| GO:0009579 | IDA, HDA | Gene Ontology | thylakoid | 9 10 |
| GO:0016020 | IEA | GOA Database | membrane | |
| GO:0016020 | IEA | InterPro | membrane | |
| GO:0009783 | NAS | Gene Ontology | photosystem II antenna complex | 11 |
| GO:0005634 | HDA | Gene Ontology | nucleus | 12 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 1.1.1.1.4 | Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.component LHCb6 |