Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12926 Brassica carinata HOM05D004156 ORTHO05D005259 3.1e-176 621.7 319 100.0
C04p66350 Brassica napus HOM05D004156 ORTHO05D005259 1.0e-174 616.7 319 99.1
A04p29140 Brassica napus HOM05D004156 ORTHO05D005259 3.2e-173 611.7 319 98.1
BraA04t18383Z Brassica rapa HOM05D004156 ORTHO05D005259 2.7e-172 608.6 319 97.8
BolC4t28140H Brassica oleracea HOM05D004156 ORTHO05D005259 4.4e-170 601.3 322 96.9
A03p21000 Brassica napus HOM05D004156 ORTHO05D005259 9.4e-165 583.6 319 93.4
BraA03t11339Z Brassica rapa HOM05D004156 ORTHO05D005259 9.4e-165 583.6 319 93.4
BcaNung06518 Brassica carinata HOM05D004156 ORTHO05D005259 5.2e-163 577.8 319 93.4
BcaC01g05579 Brassica carinata HOM05D004156 ORTHO05D005259 6.8e-163 577.4 318 92.5
BolC3t14862H Brassica oleracea HOM05D004156 ORTHO05D005259 6.8e-163 577.4 318 92.5
BcaNung06338 Brassica carinata HOM05D004156 ORTHO05D005259 1.1e-160 570.1 319 92.2
Thhalv10016958m.g Eutrema salsugineum HOM05D004156 ORTHO05D005259 9.1e-160 567.0 317 91.5
BcaB01g03735 Brassica carinata HOM05D004156 ORTHO05D005259 3.5e-159 565.1 337 87.5
Sp4g20310 Schrenkiella parvula HOM05D004156 ORTHO05D005259 4.5e-159 564.7 319 91.2
AL4G34970 Arabidopsis lyrata HOM05D004156 ORTHO05D005259 1.5e-146 523.1 324 84.3
Carub.0004s1996 Capsella rubella HOM05D004156 ORTHO05D005259 6.4e-145 517.7 315 84.4
AT2G37990 Arabidopsis thaliana HOM05D004156 ORTHO05D005259 8.3e-145 517.3 318 84.6
Aa31LG5G23180 Aethionema arabicum HOM05D004156 ORTHO05D005259 1.1e-144 516.9 317 83.9
CARHR132550 Cardamine hirsuta HOM05D004156 ORTHO05D005259 2.5e-141 505.8 323 81.7
BraA05t19767Z Brassica rapa HOM05D004156 ORTHO05D005259 3.3e-133 478.8 320 80.9
THA.LOC104806527 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 5.2e-131 471.5 317 76.0
A05p08010 Brassica napus HOM05D004156 ORTHO05D005259 3.4e-130 468.8 320 80.0
C03p24730 Brassica napus HOM05D004156 ORTHO05D005259 1.7e-129 466.5 318 78.6
THA.LOC104805714 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 8.1e-124 447.6 317 74.4
Gohir.D07G039500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 5.4e-120 434.9 320 71.6
Gorai.001G041600 Gossypium raimondii HOM05D004156 ORTHO05D005259 2.7e-119 432.6 320 71.2
Gohir.A07G035500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 7.8e-119 431.0 320 70.9
Gorai.009G018400 Gossypium raimondii HOM05D004156 ORTHO05D005259 3.9e-118 428.7 313 71.2
COL.COLO4_05789 Corchorus olitorius HOM05D004156 ORTHO05D005259 3.3e-117 425.6 321 69.5
Gohir.A05G017100 Gossypium hirsutum HOM05D004156 ORTHO05D005259 7.3e-117 424.5 324 69.8
Cpa.g.sc1199.3 Carica papaya HOM05D004156 ORTHO05D005259 4.0e-115 418.7 311 70.4
Thecc.09G124800 Theobroma cacao HOM05D004156 ORTHO05D005259 9.0e-115 417.5 317 69.1
Atru.chr7.278 Acer truncatum HOM05D004156 ORTHO05D005259 1.2e-114 417.2 292 72.9
Duzib150G1332 Durio zibethinus HOM05D004156 ORTHO05D005259 1.5e-114 416.8 320 68.8
Ciclev10008881m.g Citrus clementina HOM05D004156 ORTHO05D005259 5.8e-114 414.8 313 69.6
Nn8g39422 Nelumbo nucifera HOM05D004156 ORTHO05D005259 1.9e-112 409.8 309 68.3
Manes.14G131500 Manihot esculenta HOM05D004156 ORTHO05D005259 1.2e-111 407.1 321 67.3
Peaxi162Scf00274g00336 Petunia axillaris HOM05D004156 ORTHO05D005259 1.6e-111 406.8 314 68.5
Prupe.7G241100 Prunus persica HOM05D004156 ORTHO05D005259 2.1e-111 406.4 314 67.8
CAN.G594.20 Capsicum annuum HOM05D004156 ORTHO05D005259 3.5e-111 405.6 308 69.5
GSVIVG01027422001 Vitis vinifera HOM05D004156 ORTHO05D005259 3.5e-111 405.6 305 70.2
Solyc12g006550.2 Solanum lycopersicum HOM05D004156 ORTHO05D005259 6.0e-111 404.8 307 68.7
Sopen12g002500 Solanum pennellii HOM05D004156 ORTHO05D005259 1.7e-110 403.3 307 68.4
Lj7C630T1 Lonicera japonica HOM05D004156 ORTHO05D005259 2.3e-110 402.9 319 65.8
Dinv36535 Davidia involucrata HOM05D004156 ORTHO05D003047 3.9e-110 402.1 309 67.0
TWI32G0547 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 3.9e-110 402.1 294 70.4
MD15G1174800 Malus domestica HOM05D004156 ORTHO05D005259 5.1e-110 401.7 313 67.7
CsaV3_1G042300 Cucumis sativus L. HOM05D004156 ORTHO05D005259 6.6e-110 401.4 316 67.1
Nitab4.5_0005139g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 6.6e-110 401.4 315 66.3
PGSC0003DMG400018964 Solanum tuberosum HOM05D004156 ORTHO05D005259 6.6e-110 401.4 307 67.8
BolC4t22574H Brassica oleracea HOM05D004156 ORTHO05D005259 1.5e-109 400.2 267 80.1
Nitab4.5_0010819g0030 Nicotiana tabacum HOM05D004156 ORTHO05D005259 1.5e-109 400.2 315 66.7
TAR625G0545 Trochodendron aralioides HOM05D004156 ORTHO05D005259 3.3e-109 399.1 317 67.2
Actinidia35394 Actinidia chinensis HOM05D004156 ORTHO05D005259 4.3e-109 398.7 295 68.5
CiPaw.07G232300 Carya illinoinensis HOM05D004156 ORTHO05D005259 9.6e-109 397.5 311 68.5
Haze_24995 Corylus avellana HOM05D004156 ORTHO05D005259 9.6e-109 397.5 313 67.1
HanXRQChr06g0181321 Helianthus annuus HOM05D004156 ORTHO05D005259 9.6e-109 397.5 310 65.8
Hma1.2p1_0018F.1_g012530 Hydrangea macrophylla HOM05D004156 ORTHO05D005259 9.6e-109 397.5 313 67.4
CANSAT11G1878 Cannabis sativa HOM05D004156 ORTHO05D005259 2.1e-108 396.4 323 65.0
MELO3C015663.2 Cucumis melo HOM05D004156 ORTHO05D005259 2.8e-108 396.0 317 66.2
MD02G1034000 Malus domestica HOM05D004156 ORTHO05D005259 4.8e-108 395.2 305 67.5
Eucgr.E02428 Eucalyptus grandis HOM05D004156 ORTHO05D005259 6.2e-108 394.8 315 65.1
PGR102G0554 Punica granatum HOM05D004156 ORTHO05D005259 6.2e-108 394.8 308 66.6
Cfa002719 Carpinus fangiana HOM05D004156 ORTHO05D005259 1.1e-107 394.0 313 65.8
GSVIVG01027072001 Vitis vinifera HOM05D004156 ORTHO05D005259 1.4e-107 393.7 311 67.5
FAN23G0721 Fragaria x ananassa HOM05D004156 ORTHO05D005259 2.4e-107 392.9 316 64.2
CSS0011304 Camellia sinensis var. sinensis HOM05D004156 ORTHO05D005259 3.1e-107 392.5 288 69.8
FvH4_1g03500 Fragaria vesca HOM05D004156 ORTHO05D005259 3.1e-107 392.5 319 63.9
FAN19G1880 Fragaria x ananassa HOM05D004156 ORTHO05D005259 4.0e-107 392.1 316 64.2
FAN28G2743 Fragaria x ananassa HOM05D004156 ORTHO05D005259 4.0e-107 392.1 316 64.2
ClCG03G013780 Citrullus lanatus HOM05D004156 ORTHO05D005259 2.0e-106 389.8 313 65.8
Cc06_g08630 Coffea canephora HOM05D004156 ORTHO05D005259 2.0e-106 389.8 304 67.1
FAN26G1774 Fragaria x ananassa HOM05D004156 ORTHO05D005259 2.0e-106 389.8 316 63.9
Potri.005G231000 Populus trichocarpa HOM05D004156 ORTHO05D005259 4.5e-106 388.7 298 66.4
Sed0021765 Sechium edule HOM05D004156 ORTHO05D005259 7.6e-106 387.9 318 65.1
HanXRQChr07g0187411 Helianthus annuus HOM05D004156 ORTHO05D005259 1.3e-105 387.1 312 63.5
BcaB02g09228 Brassica carinata HOM05D004156 ORTHO05D005259 2.2e-105 386.3 223 92.4
PSO210G0875 Papaver somniferum HOM05D004156 ORTHO05D005259 2.2e-105 386.3 309 64.7
Sc14g0000240 Simmondsia chinensis HOM05D004156 ORTHO05D005259 2.9e-105 386.0 291 66.0
Lsat_1_v5_gn_9_120581 Lactuca sativa HOM05D004156 ORTHO05D005259 4.9e-105 385.2 309 63.4
MBI01_g37801_MAGBIO Magnolia biondii HOM05D004156 ORTHO05D005259 4.9e-105 385.2 286 68.9
Sabra05G0178400 Salix brachista HOM05D004156 ORTHO05D000382 6.4e-105 384.8 310 64.2
Ah.14g087130 Amaranthus hybridus HOM05D004156 ORTHO05D005259 1.4e-104 383.6 292 65.8
Gohir.D05G018000 Gossypium hirsutum HOM05D004156 ORTHO05D005259 4.2e-104 382.1 259 74.1
VMungo1309G1108 Vigna mungo HOM05D004156 ORTHO05D005259 4.2e-104 382.1 310 65.2
MSTRG.12622 Avicennia marina HOM05D004156 ORTHO05D005259 7.1e-104 381.3 304 65.5
Glyma.13G167900 Glycine max HOM05D004156 ORTHO05D005259 7.1e-104 381.3 311 65.3
DCAR_014878 Daucus carota HOM05D004156 ORTHO05D005259 2.1e-103 379.8 291 67.0
Glyma.17G115500 Glycine max HOM05D004156 ORTHO05D005259 2.1e-103 379.8 312 64.4
PSO832G0272 Papaver somniferum HOM05D004156 ORTHO05D005259 2.1e-103 379.8 309 64.1
Phvul.009G258100 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 4.6e-103 378.6 313 63.6
Aqoxy2G02204 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 6.0e-103 378.3 291 65.3
ECA247G0053 Erigeron canadensis HOM05D004156 ORTHO05D005259 6.0e-103 378.3 307 63.5
EL10Ac8g18639 Beta vulgaris HOM05D004156 ORTHO05D005259 7.9e-103 377.9 326 60.7
BcaC02g11942 Brassica carinata HOM05D004156 ORTHO05D005259 7.9e-103 377.9 258 80.2
AUR62013371 Chenopodium quinoa HOM05D004156 ORTHO05D005259 1.8e-102 376.7 293 64.8
Aqoxy6G01405 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 2.3e-102 376.3 289 65.4
Phvul.003G163900 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 5.1e-102 375.2 320 62.5
RcHm_v2.0_Chr2g0088711 Rosa chinensis HOM05D004156 ORTHO05D005259 8.7e-102 374.4 316 62.3
VMungo1215G1862 Vigna mungo HOM05D004156 ORTHO05D005259 1.1e-101 374.0 315 63.2
Psat2g006920 Pisum sativum HOM05D004156 ORTHO05D005259 2.5e-101 372.9 312 62.8
SGA_v2.0_scaffold35G14133 Striga asiatica HOM05D004156 ORTHO05D005259 5.6e-101 371.7 310 64.5
DCAR_017823 Daucus carota HOM05D004156 ORTHO05D005259 1.3e-100 370.5 347 58.2
QL02p088083 Quercus lobata HOM05D004156 ORTHO05D005259 1.3e-100 370.5 299 63.2
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 1.6e-100 370.2 306 65.4
AUR62011120 Chenopodium quinoa HOM05D004156 ORTHO05D005259 4.8e-100 368.6 303 62.7
TWI34G0257 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 4.8e-100 368.6 352 59.1
HPP92_015694 Vanilla planifolia HOM05D004156 ORTHO05D005259 1.8e-99 366.7 292 65.4
Os04g0685100 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 2.4e-99 366.3 285 64.9
ClCG06G011000 Citrullus lanatus HOM05D004156 ORTHO05D005259 3.1e-99 365.9 325 60.6
Lj4g0019515 Lotus japonicus HOM05D004156 ORTHO05D005259 4.0e-99 365.5 311 60.1
TPR.G25243 Trifolium pratense HOM05D004156 ORTHO05D005259 1.2e-98 364.0 315 61.3
unitig_21.g20656 Utricularia gibba HOM05D004156 ORTHO05D005259 1.2e-98 364.0 317 61.5
arahy.Tifrunner.gnm1.ann1.KP5LKI Arachis hypogaea HOM05D004156 ORTHO05D005259 3.4e-98 362.5 303 63.0
Migut.L01695 Erythranthe guttata HOM05D004156 ORTHO05D005259 3.4e-98 362.5 285 64.9
Lalb_Chr12g0197861 Lupinus albus HOM05D004156 ORTHO05D005259 3.4e-98 362.5 315 61.3
arahy.Tifrunner.gnm1.ann1.FDU8BE Arachis hypogaea HOM05D004156 ORTHO05D005259 7.6e-98 361.3 303 62.7
ATR0730G095 Amborella trichopoda HOM05D004156 ORTHO05D005259 1.7e-97 360.1 309 60.8
Rhsim03G0247600 Rhododendron simsii HOM05D004156 ORTHO05D005259 1.7e-97 360.1 377 54.6
Medtr2g008870 Medicago truncatula HOM05D004156 ORTHO05D005259 5.5e-96 355.1 309 60.5
SalBow5G0058 Salvia bowleyana HOM05D004156 ORTHO05D005259 9.3e-96 354.4 394 52.3
Sed0019954 Sechium edule HOM05D004156 ORTHO05D005259 3.5e-95 352.4 313 61.0
Oeu055874.1 Olea europaea HOM05D004156 ORTHO05D005259 5.1e-94 348.6 302 61.9
SGA_v2.0_scaffold224G42948 Striga asiatica HOM05D004156 ORTHO05D005259 2.8e-92 342.8 330 59.7
C04p09670 Brassica napus HOM05D004156 ORTHO05D005259 4.8e-92 342.0 238 79.0
Zm00001eb122260 Zea mays HOM05D004156 ORTHO05D005259 1.8e-91 340.1 307 59.9
Lalb_Chr07g0178901 Lupinus albus HOM05D004156 ORTHO05D005259 2.4e-91 339.7 292 63.7
CDE04G1546 Ceratophyllum demersum HOM05D004156 ORTHO05D005259 2.0e-90 336.7 294 59.9
CiPaw.15G031800 Carya illinoinensis HOM05D004156 ORTHO05D005259 5.5e-88 328.6 304 59.5
Gohir.D08G025232 Gossypium hirsutum HOM05D004156 ORTHO05D005259 7.2e-88 328.2 376 53.5
SEGI_31652 Sequoiadendron giganteum HOM05D004156 ORTHO05D005259 9.3e-88 327.8 315 55.9
Hund09135 Selenicereus undatus HOM05D004156 ORTHO05D005259 7.9e-87 324.7 331 54.7
Atru.chr7.1220 Acer truncatum HOM05D004156 ORTHO05D005259 1.0e-86 324.3 295 59.3
BcaC02g11940 Brassica carinata HOM05D004156 ORTHO05D005259 1.6e-84 317.0 177 93.2
Mapoly0036s0028 Marchantia polymorpha HOM05D004156 ORTHO05D005259 1.6e-84 317.0 305 54.8
Actinidia26780 Actinidia chinensis HOM05D004156 ORTHO05D005259 3.2e-80 302.8 317 55.5
C03p24670 Brassica napus HOM05D004156 ORTHO05D005259 5.5e-80 302.0 158 95.6
Ca_00137_v3 Cicer arietinum L. HOM05D004156 ORTHO05D000741 1.2e-79 300.8 333 53.2
Zm00001eb337040 Zea mays HOM05D004156 ORTHO05D005259 5.1e-78 295.4 308 54.2
AagrBONN_evm.TU.Sc2ySwM_368.2845 Anthoceros agrestis HOM05D004156 ORTHO05D005259 1.3e-76 290.8 300 52.7
Sc18g0000640 Simmondsia chinensis HOM05D004156 ORTHO05D005259 4.8e-76 288.9 299 52.2
SMO351G0347 Selaginella moellendorffii HOM05D004156 ORTHO05D005259 2.0e-69 266.9 252 54.8
CBR_g18768 Chara braunii HOM05D004156 ORTHO05D005259 2.6e-69 266.5 288 50.0
Pp3c3_32550 Physcomitrium patens HOM05D004156 ORTHO05D005259 4.4e-69 265.8 308 51.0
TAR626G0974 Trochodendron aralioides HOM05D004156 ORTHO05D005259 1.1e-64 251.1 181 72.4
BcaC09g49789 Brassica carinata HOM05D004156 ORTHO05D005259 6.5e-57 225.3 139 86.3
HanXRQChr06g0181331 Helianthus annuus HOM05D004156 ORTHO05D005259 7.2e-56 221.9 166 67.5
Oeu045226.1 Olea europaea HOM05D004156 ORTHO05D005259 1.1e-51 208.0 322 43.5
Gohir.A08G014600 Gossypium hirsutum HOM05D004156 ORTHO05D005259 9.4e-48 194.9 143 73.4
Cre01.g020950 Chlamydomonas reinhardtii HOM05D004156 ORTHO05D005259 1.2e-47 194.5 303 41.6
BcaNung06017 Brassica carinata HOM05D004156 ORTHO05D005259 5.6e-40 169.1 83 98.8
TAR383G1033 Trochodendron aralioides HOM05D004156 ORTHO05D005259 2.8e-39 166.8 172 59.9
Nitab4.5_0002556g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 2.0e-37 160.6 173 53.8
Os06g0142050 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 9.5e-32 141.7 165 55.2
C01p32910 Brassica napus HOM05D004156 ORTHO05D005259 3.6e-31 139.8 99 74.7
PRCOL_00002162 Prasinoderma coloniale HOM05D004156 ORTHO05D005259 6.2e-31 139.0 332 34.6
MCO03G226 Micromonas commoda HOM05D004156 ORTHO05D005259 1.0e-25 121.7 310 32.3
Actinidia37158 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.2e-23 114.8 102 63.7
Nn8g39426 Nelumbo nucifera HOM05D004156 ORTHO05D005259 2.2e-20 104.0 70 68.6
AagrBONN_evm.TU.Sc2ySwM_228.5043 Anthoceros agrestis HOM05D004156 ORTHO05D005259 4.1e-19 99.8 90 55.6
AagrBONN_evm.TU.Sc2ySwM_228.5042 Anthoceros agrestis HOM05D004156 ORTHO05D005259 2.8e-15 87.0 89 51.7
Rhsim11G0147700 Rhododendron simsii HOM05D004156 ORTHO05D338749 3.5e-10 70.1 61 59.0
Zm00001eb060690 Zea mays HOM05D004156 ORTHO05D005259 1.9e-08 64.3 56 53.6
Zm00001eb433790 Zea mays HOM05D003078 ORTHO05D446193 5.6e-08 62.8 56 51.8
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 1.6e-07 61.2 38 81.6
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 2.8e-07 60.5 43 67.4


User provided reference genes

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