Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12907 Brassica carinata HOM05D000257 ORTHO05D008527 8.7e-60 233.4 116 100.0
C04p67050 Brassica napus HOM05D000257 ORTHO05D008527 6.1e-53 210.7 112 92.9
BolC4t28207H Brassica oleracea HOM05D000257 ORTHO05D008527 6.1e-53 210.7 112 92.9
BraA04t18441Z Brassica rapa HOM05D000257 ORTHO05D008527 6.1e-53 210.7 112 92.9
A04p29790 Brassica napus HOM05D000257 ORTHO05D008527 5.1e-52 207.6 112 92.0
Sp4g21470 Schrenkiella parvula HOM05D000257 ORTHO05D008527 1.7e-42 176.0 112 77.7
Thhalv10017943m.g Eutrema salsugineum HOM05D000257 ORTHO05D008527 3.7e-42 174.9 112 78.6
Carub.0004s2117 Capsella rubella HOM05D000257 ORTHO05D008527 2.0e-40 169.1 113 75.2
AL4G36420 Arabidopsis lyrata HOM05D000257 ORTHO05D008527 3.8e-39 164.9 112 73.2
AL92U10090 Arabidopsis lyrata HOM05D000257 ORTHO05D008527 5.0e-39 164.5 112 72.3
CARHR133900 Cardamine hirsuta HOM05D000257 ORTHO05D008527 5.0e-39 164.5 113 77.0
Aa31LG5G20480 Aethionema arabicum HOM05D000257 ORTHO05D008527 6.5e-39 164.1 112 71.4
AT2G39120 Arabidopsis thaliana HOM05D000257 ORTHO05D008527 1.6e-37 159.5 112 70.5
THA.LOC104825223 Tarenaya hassleriana HOM05D000257 ORTHO05D008527 2.6e-32 142.1 117 59.8
TWI63G0728 Tripterygium wilfordii HOM05D000257 ORTHO05D008527 7.2e-30 134.0 89 67.4
MELO3C012412.2 Cucumis melo HOM05D000257 ORTHO05D008527 4.7e-29 131.3 84 69.0
Cpa.g.sc53.103 Carica papaya HOM05D000257 ORTHO05D008527 6.1e-29 131.0 88 64.8
TWI09G0108 Tripterygium wilfordii HOM05D000257 ORTHO05D008527 6.1e-29 131.0 89 65.2
QL08p054958 Quercus lobata HOM05D000257 ORTHO05D008527 2.3e-28 129.0 89 65.2
Rhsim04G0217000 Rhododendron simsii HOM05D000257 ORTHO05D008527 2.3e-28 129.0 112 58.9
Lj6g0017652 Lotus japonicus HOM05D000257 ORTHO05D008527 3.9e-28 128.3 125 54.4
Potri.008G036600 Populus trichocarpa HOM05D000257 ORTHO05D008527 3.9e-28 128.3 126 54.0
VMungo0540G1055 Vigna mungo HOM05D000257 ORTHO05D008527 5.2e-28 127.9 85 67.1
Cfa012474 Carpinus fangiana HOM05D000257 ORTHO05D008527 8.8e-28 127.1 125 52.0
Haze_08188 Corylus avellana HOM05D000257 ORTHO05D008527 8.8e-28 127.1 125 52.0
ClCG05G021160 Citrullus lanatus HOM05D000257 ORTHO05D008527 1.1e-27 126.7 109 57.8
Glyma.09G029500 Glycine max HOM05D000257 ORTHO05D008527 1.1e-27 126.7 85 65.9
Medtr7g018630 Medicago truncatula HOM05D000257 ORTHO05D008527 1.5e-27 126.3 84 69.0
Actinidia21517 Actinidia chinensis HOM05D000257 ORTHO05D008527 2.0e-27 125.9 123 53.7
Ca_26151_v3 Cicer arietinum L. HOM05D000257 ORTHO05D008527 2.0e-27 125.9 84 66.7
Duzib114G0678 Durio zibethinus HOM05D000257 ORTHO05D008527 2.0e-27 125.9 89 65.2
Phvul.006G123100 Phaseolus vulgaris HOM05D000257 ORTHO05D008527 2.0e-27 125.9 85 64.7
Glyma.09G031300 Glycine max HOM05D000257 ORTHO05D008527 3.3e-27 125.2 85 64.7
Manes.07G095800 Manihot esculenta HOM05D000257 ORTHO05D008527 3.3e-27 125.2 89 62.9
Sed0016810 Sechium edule HOM05D000257 ORTHO05D008527 3.3e-27 125.2 89 64.0
Manes.07G097000 Manihot esculenta HOM05D000257 ORTHO05D008527 7.4e-27 124.0 89 61.8
CiPaw.01G270200 Carya illinoinensis HOM05D000257 ORTHO05D008527 9.7e-27 123.6 125 51.2
CsaV3_5G036110 Cucumis sativus L. HOM05D000257 ORTHO05D008527 2.2e-26 122.5 111 53.2
vmacro08193 Vaccinium macrocarpon HOM05D000257 ORTHO05D008527 2.2e-26 122.5 113 54.9
vmacro08196 Vaccinium macrocarpon HOM05D000257 ORTHO05D008527 2.2e-26 122.5 113 54.9
Hma1.2p1_0367F.1_g137200 Hydrangea macrophylla HOM05D000257 ORTHO05D008527 3.7e-26 121.7 89 62.9
Lj5C274T18 Lonicera japonica HOM05D000257 ORTHO05D008527 4.8e-26 121.3 89 64.0
Thecc.10G079400 Theobroma cacao HOM05D000257 ORTHO05D008527 4.8e-26 121.3 89 61.8
arahy.Tifrunner.gnm1.ann1.XFB8DA Arachis hypogaea HOM05D000257 ORTHO05D008527 6.3e-26 120.9 85 63.5
Sc06g0001690 Simmondsia chinensis HOM05D000257 ORTHO05D008527 1.1e-25 120.2 88 60.2
arahy.Tifrunner.gnm1.ann1.QS0XU5 Arachis hypogaea HOM05D000257 ORTHO05D008527 1.4e-25 119.8 85 62.4
Atru.chr12.824 Acer truncatum HOM05D000257 ORTHO05D008527 2.4e-25 119.0 101 58.4
Prupe.2G210300 Prunus persica HOM05D000257 ORTHO05D008527 2.4e-25 119.0 125 51.2
Lalb_Chr18g0058281 Lupinus albus HOM05D000257 ORTHO05D008527 4.1e-25 118.2 85 61.2
RcHm_v2.0_Chr1g0343651 Rosa chinensis HOM05D000257 ORTHO05D008527 4.1e-25 118.2 91 64.8
MD01G1105000 Malus domestica HOM05D000257 ORTHO05D008527 7.0e-25 117.5 125 51.2
EL10Ac4g09126 Beta vulgaris HOM05D000257 ORTHO05D008527 9.1e-25 117.1 100 56.0
Thecc.05G230000 Theobroma cacao HOM05D000257 ORTHO05D008527 9.1e-25 117.1 89 58.4
arahy.Tifrunner.gnm1.ann1.NDR98S Arachis hypogaea HOM05D000257 ORTHO05D008527 1.2e-24 116.7 96 57.3
Gohir.A05G412000 Gossypium hirsutum HOM05D000257 ORTHO05D008527 1.6e-24 116.3 111 53.2
HanXRQChr09g0270071 Helianthus annuus HOM05D000257 ORTHO05D008527 1.6e-24 116.3 85 61.2
Gorai.012G005300 Gossypium raimondii HOM05D000257 ORTHO05D008527 2.0e-24 115.9 89 61.8
Gohir.D04G004000 Gossypium hirsutum HOM05D000257 ORTHO05D008527 4.5e-24 114.8 111 52.3
Psat3g192520 Pisum sativum HOM05D000257 ORTHO05D008527 4.5e-24 114.8 85 63.5
Hund22119 Selenicereus undatus HOM05D000257 ORTHO05D008527 4.5e-24 114.8 84 58.3
FvH4_7g08660 Fragaria vesca HOM05D000257 ORTHO05D008527 7.7e-24 114.0 89 62.9
HanXRQChr15g0496031 Helianthus annuus HOM05D000257 ORTHO05D008527 1.0e-23 113.6 84 60.7
FAN19G1367 Fragaria x ananassa HOM05D000257 ORTHO05D008527 1.3e-23 113.2 89 61.8
Solyc10g079160.1 Solanum lycopersicum HOM05D000257 ORTHO05D008527 1.3e-23 113.2 91 62.6
PGSC0003DMG400008175 Solanum tuberosum HOM05D000257 ORTHO05D008527 1.3e-23 113.2 91 62.6
AUR62004936 Chenopodium quinoa HOM05D000257 ORTHO05D008527 1.7e-23 112.8 85 58.8
AUR62029055 Chenopodium quinoa HOM05D000257 ORTHO05D008527 1.7e-23 112.8 111 51.4
COL.COLO4_12168 Corchorus olitorius HOM05D000257 ORTHO05D008527 1.7e-23 112.8 79 63.3
Sopen10g029810 Solanum pennellii HOM05D000257 ORTHO05D008527 1.7e-23 112.8 91 62.6
TAR623G1216 Trochodendron aralioides HOM05D000257 ORTHO05D008527 2.2e-23 112.5 112 50.0
FAN03G0741 Fragaria x ananassa HOM05D000257 ORTHO05D008527 2.9e-23 112.1 89 61.8
TAR629G1014 Trochodendron aralioides HOM05D000257 ORTHO05D008527 3.8e-23 111.7 112 50.0
Aqoxy4G02721 Aquilegia oxysepala HOM05D000257 ORTHO05D008527 5.0e-23 111.3 90 58.9
Ah.06g192310 Amaranthus hybridus HOM05D005585 ORTHO05D008527 6.5e-23 110.9 85 56.5
Nitab4.5_0000082g0080 Nicotiana tabacum HOM05D000257 ORTHO05D008527 6.5e-23 110.9 120 50.0
DCAR_030802 Daucus carota HOM05D000257 ORTHO05D008527 1.1e-22 110.2 84 58.3
AUR62001018 Chenopodium quinoa HOM05D000257 ORTHO05D008527 1.5e-22 109.8 111 49.5
Nn1g08915 Nelumbo nucifera HOM05D000257 ORTHO05D008527 1.5e-22 109.8 112 48.2
Nitab4.5_0000608g0130 Nicotiana tabacum HOM05D000257 ORTHO05D008527 1.5e-22 109.8 99 55.6
CAN.G641.18 Capsicum annuum HOM05D000257 ORTHO05D008527 2.5e-22 109.0 120 50.0
CSS0045252 Camellia sinensis var. sinensis HOM05D000257 ORTHO05D008527 3.2e-22 108.6 79 59.5
Cc11_g04820 Coffea canephora HOM05D000257 ORTHO05D008527 1.6e-21 106.3 90 57.8
FvH4_7g08640 Fragaria vesca HOM05D000257 ORTHO05D008527 6.1e-21 104.4 79 64.6
MSTRG.28037 Avicennia marina HOM05D000257 ORTHO05D008527 1.0e-20 103.6 93 54.8
MBI17_g24556_MAGBIO Magnolia biondii HOM05D000257 ORTHO05D008527 1.0e-20 103.6 79 62.0
SHI08919 Sapria himalayana HOM05D000257 ORTHO05D008527 1.0e-20 103.6 104 49.0
HPP92_023064 Vanilla planifolia HOM05D000257 ORTHO05D008527 1.0e-20 103.6 85 48.2
Manes.07G095824 Manihot esculenta HOM05D000257 ORTHO05D008527 1.4e-20 103.2 85 56.5
FAN10G1276 Fragaria x ananassa HOM05D000257 ORTHO05D008527 1.8e-20 102.8 87 60.9
FvH4_1g06302 Fragaria vesca HOM05D000257 ORTHO05D008527 2.3e-20 102.4 79 62.0
Eucgr.J01069 Eucalyptus grandis HOM05D000257 ORTHO05D008527 3.0e-20 102.1 79 53.2
SalBow8G0753 Salvia bowleyana HOM05D000257 ORTHO05D008527 3.0e-20 102.1 93 53.8
SalBow8G4053 Salvia bowleyana HOM05D000257 ORTHO05D008527 3.0e-20 102.1 93 53.8
Ciclev10033810m.g Citrus clementina HOM05D000257 ORTHO05D008527 8.8e-20 100.5 79 58.2
Dinv32027 Davidia involucrata HOM05D000257 ORTHO05D008527 2.0e-19 99.4 79 54.4
Migut.N01847 Erythranthe guttata HOM05D000257 ORTHO05D008527 2.6e-19 99.0 105 52.4
unitig_0.g2289 Utricularia gibba HOM05D000257 ORTHO05D008527 2.6e-19 99.0 99 49.5
Peaxi162Scf00003g00407 Petunia axillaris HOM05D000257 ORTHO05D008527 7.5e-19 97.4 81 58.0
Sabra08G0024700 Salix brachista HOM05D000257 ORTHO05D008527 1.7e-15 86.3 62 61.3
ECA247G1681 Erigeron canadensis HOM05D000257 ORTHO05D008527 2.9e-15 85.5 60 63.3
ATR0796G314 Amborella trichopoda HOM05D000257 ORTHO05D008527 1.2e-13 80.1 79 44.3
SEGI_29574 Sequoiadendron giganteum HOM05D000257 ORTHO05D008920 1.0e-12 77.0 89 38.2
ATR0582G343 Amborella trichopoda HOM05D000257 ORTHO05D009436 1.8e-09 66.2 98 31.6
Dinv07477 Davidia involucrata HOM05D000257 ORTHO05D004041 1.8e-09 66.2 79 36.7
Cpa.g.sc188.10 Carica papaya HOM05D000257 ORTHO05D004041 3.1e-09 65.5 88 36.4
CSS0045330 Camellia sinensis var. sinensis HOM05D000257 ORTHO05D004041 4.1e-09 65.1 86 33.7
FvH4_4g08630 Fragaria vesca HOM05D000257 ORTHO05D004041 7.0e-09 64.3 80 37.5
FAN12G1794 Fragaria x ananassa HOM05D000257 ORTHO05D004041 7.0e-09 64.3 80 37.5
Gohir.A01G183100 Gossypium hirsutum HOM05D000257 ORTHO05D004041 7.0e-09 64.3 87 37.9
Gorai.002G216300 Gossypium raimondii HOM05D000257 ORTHO05D004041 7.0e-09 64.3 87 37.9
CSS0020684 Camellia sinensis var. sinensis HOM05D000257 ORTHO05D004041 9.1e-09 63.9 86 33.7
Gohir.A07G161025 Gossypium hirsutum HOM05D000257 ORTHO05D004041 9.1e-09 63.9 87 37.9
RcHm_v2.0_Chr4g0405141 Rosa chinensis HOM05D000257 ORTHO05D004041 1.2e-08 63.5 79 36.7
CDE05G1089 Ceratophyllum demersum HOM05D000257 ORTHO05D004041 2.0e-08 62.8 105 32.4
FAN22G1606 Fragaria x ananassa HOM05D000257 ORTHO05D004041 2.7e-08 62.4 79 36.7
ATR0681G318 Amborella trichopoda HOM05D000257 ORTHO05D009436 3.5e-08 62.0 96 31.2
Gohir.D01G174300 Gossypium hirsutum HOM05D000257 ORTHO05D004041 3.5e-08 62.0 87 36.8
ECA236G0381 Erigeron canadensis HOM05D000257 ORTHO05D004041 4.5e-08 61.6 79 38.0
MELO3C019828.2 Cucumis melo HOM05D000257 ORTHO05D004041 5.9e-08 61.2 82 39.0
CDE06G1879 Ceratophyllum demersum HOM05D000257 ORTHO05D008527 7.7e-08 60.8 62 50.0
Haze_10060 Corylus avellana HOM05D000257 ORTHO05D004041 7.7e-08 60.8 92 39.1
Nitab4.5_0000948g0020 Nicotiana tabacum HOM05D000257 ORTHO05D004041 7.7e-08 60.8 83 34.9
Actinidia00181 Actinidia chinensis HOM05D000257 ORTHO05D004041 1.0e-07 60.5 81 33.3
CiPaw.05G005600 Carya illinoinensis HOM05D000257 ORTHO05D004041 1.0e-07 60.5 88 37.5
Cc02_g23050 Coffea canephora HOM05D000257 ORTHO05D004041 1.0e-07 60.5 83 36.1
HanXRQChr07g0187311 Helianthus annuus HOM05D000257 ORTHO05D004041 1.0e-07 60.5 78 38.5
Lsat_1_v5_gn_7_76661 Lactuca sativa HOM05D000257 ORTHO05D004041 1.0e-07 60.5 78 39.7
Sopen01g046050 Solanum pennellii HOM05D000257 ORTHO05D004041 1.0e-07 60.5 83 36.1
CAN.G798.62 Capsicum annuum HOM05D000257 ORTHO05D004041 1.3e-07 60.1 83 33.7
CDE02G4415 Ceratophyllum demersum HOM05D001117 ORTHO05D000930 1.3e-07 60.1 82 32.9
SalBow7G1473 Salvia bowleyana HOM05D000257 ORTHO05D004041 1.7e-07 59.7 87 34.5
Nn5g27831 Nelumbo nucifera HOM05D000257 ORTHO05D004041 5.0e-07 58.2 78 34.6
ATR0584G220 Amborella trichopoda HOM05D000257 ORTHO05D008920 6.6e-07 57.8 89 34.8
Prupe.8G052100 Prunus persica HOM05D000257 ORTHO05D004041 6.6e-07 57.8 100 34.0
vmacro01718 Vaccinium macrocarpon HOM05D000257 ORTHO05D004041 1.1e-06 57.0 93 33.3
Glyma.12G134100 Glycine max HOM05D000257 ORTHO05D004041 1.9e-06 56.2 79 35.4
TWI56G0411 Tripterygium wilfordii HOM05D000257 ORTHO05D004041 1.9e-06 56.2 86 36.0
unitig_32.g11641 Utricularia gibba HOM05D000257 ORTHO05D009436 1.9e-06 56.2 86 36.0
Potri.004G223200 Populus trichocarpa HOM05D000257 ORTHO05D004041 2.5e-06 55.8 102 29.4
FAN07G1042 Fragaria x ananassa HOM05D000257 ORTHO05D004041 3.3e-06 55.5 56 42.9
Sabra01G0169100 Salix brachista HOM05D000257 ORTHO05D004041 3.3e-06 55.5 100 30.0
PGSC0003DMG400027621 Solanum tuberosum HOM05D000257 ORTHO05D009436 3.3e-06 55.5 82 39.0
CsaV3_5G024080 Cucumis sativus L. HOM05D000257 ORTHO05D004041 4.2e-06 55.1 80 33.8
Haze_17896 Corylus avellana HOM05D000257 ORTHO05D004041 5.5e-06 54.7 98 32.7
Glyma.06G270600 Glycine max HOM05D000257 ORTHO05D004041 5.5e-06 54.7 89 34.8
Solyc11g019970.3 Solanum lycopersicum HOM05D000257 ORTHO05D009436 5.5e-06 54.7 82 39.0
Sopen11g010090 Solanum pennellii HOM05D000257 ORTHO05D009436 5.5e-06 54.7 82 39.0
VMungo0331G0031 Vigna mungo HOM05D000257 ORTHO05D004041 5.5e-06 54.7 102 32.4
MD10G1045200 Malus domestica HOM05D000257 ORTHO05D004041 7.2e-06 54.3 105 31.4
Phvul.011G138200 Phaseolus vulgaris HOM05D000257 ORTHO05D004041 7.2e-06 54.3 89 32.6


User provided reference genes

Program Settings