Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12454 Brassica carinata HOM05D000463 ORTHO05D004638 2.7e-189 665.2 346 100.0
BolC4t21959H Brassica oleracea HOM05D000463 ORTHO05D004638 1.9e-163 579.3 388 82.7
C04p03210 Brassica napus HOM05D000463 ORTHO05D004638 1.6e-162 576.2 388 82.5
A05p02690 Brassica napus HOM05D000463 ORTHO05D004638 8.7e-148 527.3 389 77.9
BraA05t19261Z Brassica rapa HOM05D000463 ORTHO05D004638 3.7e-146 521.9 389 77.1
Sp4g24260 Schrenkiella parvula HOM05D000463 ORTHO05D004638 1.1e-76 291.2 443 50.6
AL4G40400 Arabidopsis lyrata HOM05D000463 ORTHO05D004638 3.2e-73 279.6 427 51.5
AT2G42030 Arabidopsis thaliana HOM05D000463 ORTHO05D004638 1.5e-67 260.8 433 48.0
Carub.0004s2436 Capsella rubella HOM05D000463 ORTHO05D004638 1.4e-65 254.2 439 48.1
CARHR137120 Cardamine hirsuta HOM05D000463 ORTHO05D004638 1.4e-49 201.1 382 44.5
Carub.0005s2488 Capsella rubella HOM05D000463 ORTHO05D004638 7.3e-46 188.7 446 37.7
BcaC01g05313 Brassica carinata HOM05D000463 ORTHO05D004638 1.3e-45 188.0 409 43.3
C06p25040 Brassica napus HOM05D000463 ORTHO05D004638 3.6e-45 186.4 451 37.9
BolC6t37661H Brassica oleracea HOM05D000463 ORTHO05D004638 3.6e-45 186.4 451 37.9
BcaB02g07555 Brassica carinata HOM05D000463 ORTHO05D004638 4.8e-45 186.0 451 37.9
A07p23830 Brassica napus HOM05D000463 ORTHO05D004638 6.2e-45 185.7 451 37.7
BraA07t30036Z Brassica rapa HOM05D000463 ORTHO05D004638 6.2e-45 185.7 451 37.7
Sp5g04690 Schrenkiella parvula HOM05D000463 ORTHO05D004638 8.1e-45 185.3 451 37.7
AL5G39690 Arabidopsis lyrata HOM05D000463 ORTHO05D004638 1.1e-44 184.9 450 37.6
Aa31LG10G12730 Aethionema arabicum HOM05D000463 ORTHO05D004638 1.4e-44 184.5 452 38.1
C08p33590 Brassica napus HOM05D000463 ORTHO05D004638 3.1e-44 183.3 449 37.9
BraA09t40531Z Brassica rapa HOM05D000463 ORTHO05D004638 3.1e-44 183.3 450 37.8
BolC8t50955H Brassica oleracea HOM05D000463 ORTHO05D004638 9.0e-44 181.8 450 37.6
BcaB02g08281 Brassica carinata HOM05D000463 ORTHO05D004638 2.6e-43 180.3 455 36.0
A09p50850 Brassica napus HOM05D000463 ORTHO05D004638 2.6e-43 180.3 450 37.6
Thhalv10005986m.g Eutrema salsugineum HOM05D000463 ORTHO05D004638 3.4e-43 179.9 451 36.8
C04p34360 Brassica napus HOM05D000463 ORTHO05D004638 2.2e-42 177.2 444 37.6
AT3G58030 Arabidopsis thaliana HOM05D000463 ORTHO05D004638 3.8e-42 176.4 450 36.4
BcaC02g09982 Brassica carinata HOM05D000463 ORTHO05D004638 4.9e-42 176.0 444 37.4
BolC4t24998H Brassica oleracea HOM05D000463 ORTHO05D004638 4.9e-42 176.0 444 37.4
CARHR168350 Cardamine hirsuta HOM05D000463 ORTHO05D004638 2.4e-41 173.7 450 35.8
BcaC08g44889 Brassica carinata HOM05D000463 ORTHO05D004638 9.3e-41 171.8 447 36.9
Ciclev10011813m.g Citrus clementina HOM05D000463 ORTHO05D004638 1.8e-39 167.5 438 36.5
Lj1g0000378 Lotus japonicus HOM05D000463 ORTHO05D004638 8.7e-39 165.2 454 36.6
A03p23530 Brassica napus HOM05D000463 ORTHO05D004638 1.5e-38 164.5 402 41.0
BolC3t15176H Brassica oleracea HOM05D000463 ORTHO05D004638 9.6e-38 161.8 384 41.1
FvH4_6g22060 Fragaria vesca HOM05D000463 ORTHO05D004638 1.6e-37 161.0 430 35.8
FAN14G0395 Fragaria x ananassa HOM05D000463 ORTHO05D004638 1.6e-37 161.0 430 35.8
FAN05G5176 Fragaria x ananassa HOM05D000463 ORTHO05D004638 3.7e-37 159.8 425 35.8
Atru.chr8.1131 Acer truncatum HOM05D000463 ORTHO05D004638 4.8e-37 159.5 446 36.1
C03p28070 Brassica napus HOM05D000463 ORTHO05D004638 4.8e-37 159.5 387 40.6
BcaC07g40176 Brassica carinata HOM05D000463 ORTHO05D004638 8.1e-37 158.7 450 36.2
FAN02G3128 Fragaria x ananassa HOM05D000463 ORTHO05D004638 1.4e-36 157.9 430 35.3
FAN09G4568 Fragaria x ananassa HOM05D000463 ORTHO05D004638 4.0e-36 156.4 417 35.7
THA.LOC104802629 Tarenaya hassleriana HOM05D000463 ORTHO05D004638 4.0e-36 156.4 443 36.1
RcHm_v2.0_Chr3g0479391 Rosa chinensis HOM05D000463 ORTHO05D004638 5.3e-36 156.0 438 35.2
THA.LOC104820181 Tarenaya hassleriana HOM05D000463 ORTHO05D004638 5.3e-36 156.0 452 38.1
Prupe.7G079200 Prunus persica HOM05D000463 ORTHO05D004638 1.5e-35 154.5 436 34.9
FAN09G1798 Fragaria x ananassa HOM05D000463 ORTHO05D004638 2.6e-35 153.7 430 34.9
TWI53G0008 Tripterygium wilfordii HOM05D000463 ORTHO05D004638 2.6e-35 153.7 434 35.3
BraA03t11570Z Brassica rapa HOM05D000463 ORTHO05D004638 5.8e-35 152.5 400 40.5
TWI77G0981 Tripterygium wilfordii HOM05D000463 ORTHO05D004638 5.8e-35 152.5 433 35.8
Phvul.001G143400 Phaseolus vulgaris HOM05D000463 ORTHO05D004638 9.9e-35 151.8 454 35.0
FAN09G4131 Fragaria x ananassa HOM05D000463 ORTHO05D004638 1.3e-34 151.4 430 35.1
MD12G1055900 Malus domestica HOM05D000463 ORTHO05D004638 1.7e-34 151.0 427 33.5
Lalb_Chr15g0079031 Lupinus albus HOM05D000463 ORTHO05D004638 8.4e-34 148.7 447 35.1
THA.LOC104824479 Tarenaya hassleriana HOM05D000463 ORTHO05D004638 1.1e-33 148.3 450 36.2
Haze_20006 Corylus avellana HOM05D000463 ORTHO05D004638 1.9e-33 147.5 446 34.3
VMungo1383G3187 Vigna mungo HOM05D000463 ORTHO05D004638 1.9e-33 147.5 464 34.9
Cfa020154 Carpinus fangiana HOM05D000463 ORTHO05D004638 2.5e-33 147.1 433 34.6
Manes.09G036300 Manihot esculenta HOM05D000463 ORTHO05D004638 2.5e-33 147.1 440 34.3
TPR.G18218 Trifolium pratense HOM05D000463 ORTHO05D004638 2.5e-33 147.1 403 36.2
Glyma.19G148900 Glycine max HOM05D000463 ORTHO05D004638 4.2e-33 146.4 453 34.2
CiPaw.09G029500 Carya illinoinensis HOM05D000463 ORTHO05D004638 5.5e-33 146.0 429 35.4
Lalb_Chr18g0047951 Lupinus albus HOM05D000463 ORTHO05D004638 5.5e-33 146.0 451 35.9
arahy.Tifrunner.gnm1.ann1.Y6KX4T Arachis hypogaea HOM05D000463 ORTHO05D004638 7.1e-33 145.6 464 34.3
arahy.Tifrunner.gnm1.ann1.3D8856 Arachis hypogaea HOM05D000044 ORTHO05D004638 1.6e-32 144.4 466 34.1
Glyma.03G145700 Glycine max HOM05D000463 ORTHO05D004638 2.7e-32 143.7 449 33.9
Gohir.D09G124600 Gossypium hirsutum HOM05D000463 ORTHO05D004638 3.5e-32 143.3 439 36.0
Medtr7g093390 Medicago truncatula HOM05D000463 ORTHO05D004638 6.0e-32 142.5 250 45.2
Lalb_Chr04g0259581 Lupinus albus HOM05D000463 ORTHO05D004638 7.9e-32 142.1 247 47.0
Gorai.006G143500 Gossypium raimondii HOM05D000463 ORTHO05D004638 1.0e-31 141.7 439 35.8
Manes.08G043800 Manihot esculenta HOM05D000463 ORTHO05D004638 1.0e-31 141.7 437 33.6
MD14G1055900 Malus domestica HOM05D000463 ORTHO05D004638 1.8e-31 141.0 437 33.0
QL07p024138 Quercus lobata HOM05D000463 ORTHO05D004638 3.0e-31 140.2 433 34.9
CANSAT64G1101 Cannabis sativa HOM05D000463 ORTHO05D004638 3.9e-31 139.8 426 34.3
TWI74G1471 Tripterygium wilfordii HOM05D000463 ORTHO05D004638 3.9e-31 139.8 251 42.6
Potri.016G058300 Populus trichocarpa HOM05D000463 ORTHO05D004638 1.9e-30 137.5 455 33.2
Ca_08529_v3 Cicer arietinum L. HOM05D000463 ORTHO05D004638 3.3e-30 136.7 250 44.0
Duzib093G0445 Durio zibethinus HOM05D000463 ORTHO05D004638 5.6e-30 136.0 421 34.9
Psat3g068080 Pisum sativum HOM05D000463 ORTHO05D004638 5.6e-30 136.0 250 44.8
Sed0011641 Sechium edule HOM05D000463 ORTHO05D004638 5.6e-30 136.0 446 33.2
Thecc.05G173700 Theobroma cacao HOM05D000463 ORTHO05D004638 5.6e-30 136.0 429 33.8
Duzib128G0738 Durio zibethinus HOM05D000463 ORTHO05D004638 9.6e-30 135.2 424 34.4
Oeu032201.1 Olea europaea HOM05D000463 ORTHO05D004638 9.6e-30 135.2 406 34.7
COL.COLO4_29337 Corchorus olitorius HOM05D000463 ORTHO05D004638 1.3e-29 134.8 425 34.8
Potri.006G193600 Populus trichocarpa HOM05D000463 ORTHO05D004638 1.6e-29 134.4 461 31.9
CiPaw.10G025900 Carya illinoinensis HOM05D000463 ORTHO05D004638 2.8e-29 133.7 426 32.9
Dinv24062 Davidia involucrata HOM05D000463 ORTHO05D004638 2.8e-29 133.7 400 34.8
Gohir.D11G331600 Gossypium hirsutum HOM05D000463 ORTHO05D004638 2.8e-29 133.7 434 34.8
Cc06_g15750 Coffea canephora HOM05D000463 ORTHO05D004638 3.7e-29 133.3 250 40.4
Gorai.007G362400 Gossypium raimondii HOM05D000463 ORTHO05D004638 6.2e-29 132.5 438 34.2
Rhsim04G0096400 Rhododendron simsii HOM05D000463 ORTHO05D004638 6.2e-29 132.5 241 41.1
Eucgr.A02461 Eucalyptus grandis HOM05D000463 ORTHO05D004638 1.1e-28 131.7 430 34.2
CsaV3_3G038710 Cucumis sativus L. HOM05D000463 ORTHO05D004638 1.8e-28 131.0 450 33.1
Sabra06G0148700 Salix brachista HOM05D000463 ORTHO05D004638 4.0e-28 129.8 451 31.0
MELO3C009615.2 Cucumis melo HOM05D000463 ORTHO05D004638 9.0e-28 128.6 449 32.3
Peaxi162Scf00480g00032 Petunia axillaris HOM05D000463 ORTHO05D004638 1.5e-27 127.9 248 41.9
DCAR_017034 Daucus carota HOM05D000463 ORTHO05D004638 2.0e-27 127.5 253 39.9
Gohir.A11G314500 Gossypium hirsutum HOM05D000463 ORTHO05D004638 2.6e-27 127.1 436 33.5
CSS0036589 Camellia sinensis var. sinensis HOM05D000463 ORTHO05D004638 5.8e-27 125.9 439 32.1
Oeu063565.1 Olea europaea HOM05D000463 ORTHO05D004638 7.6e-27 125.6 435 33.1
Nitab4.5_0000105g0180 Nicotiana tabacum HOM05D000463 ORTHO05D004638 1.0e-26 125.2 254 40.9
ClCG10G017610 Citrullus lanatus HOM05D000463 ORTHO05D004638 2.2e-26 124.0 454 32.4
SGA_v2.0_scaffold94G28415 Striga asiatica HOM05D000463 ORTHO05D004638 2.2e-26 124.0 431 33.4
PGR004G2023 Punica granatum HOM05D000463 ORTHO05D004638 2.9e-26 123.6 253 43.9
Rhsim03G0005400 Rhododendron simsii HOM05D000463 ORTHO05D004638 2.9e-26 123.6 454 31.7
Sed0027278 Sechium edule HOM05D000463 ORTHO05D004638 4.9e-26 122.9 436 32.3
Nitab4.5_0002343g0040 Nicotiana tabacum HOM05D000463 ORTHO05D004638 6.5e-26 122.5 254 40.2
RcHm_v2.0_Chr3g0479381 Rosa chinensis HOM05D000463 ORTHO05D004638 8.4e-26 122.1 236 42.4
Hma1.2p1_0676F.1_g201940 Hydrangea macrophylla HOM05D000463 ORTHO05D004638 1.4e-25 121.3 252 38.9
Lju124C25T1 Lonicera japonica HOM05D000463 ORTHO05D004638 2.5e-25 120.6 250 40.0
Sabra16G0061700 Salix brachista HOM05D000463 ORTHO05D004638 2.5e-25 120.6 273 39.6
Hma1.2p1_0431F.1_g151550 Hydrangea macrophylla HOM05D000463 ORTHO05D004638 4.2e-25 119.8 252 38.5
Sopen10g029520 Solanum pennellii HOM05D000463 ORTHO05D004638 9.3e-25 118.6 248 41.1
Ah.13g075760 Amaranthus hybridus HOM05D000463 ORTHO05D004638 1.2e-24 118.2 240 43.3
Peaxi162Scf00003g00459 Petunia axillaris HOM05D000463 ORTHO05D004638 1.2e-24 118.2 248 40.3
PGSC0003DMG400011419 Solanum tuberosum HOM05D000463 ORTHO05D004638 1.6e-24 117.9 248 41.1
Eucgr.K01846 Eucalyptus grandis HOM05D000463 ORTHO05D004638 2.7e-24 117.1 245 40.8
MSTRG.10848 Avicennia marina HOM05D000463 ORTHO05D004638 3.5e-24 116.7 254 39.0
AUR62015353 Chenopodium quinoa HOM05D000463 ORTHO05D004638 3.5e-24 116.7 239 42.3
Duzib106G0404 Durio zibethinus HOM05D000463 ORTHO05D004638 3.5e-24 116.7 250 42.0
AUR62012018 Chenopodium quinoa HOM05D000463 ORTHO05D004638 1.3e-23 114.8 239 41.4
AUR62044685 Chenopodium quinoa HOM05D000463 ORTHO05D004638 1.3e-23 114.8 239 41.4
Solyc10g078900.3 Solanum lycopersicum HOM05D000463 ORTHO05D004638 1.3e-23 114.8 245 40.8
EL10Ac3g06897 Beta vulgaris HOM05D000463 ORTHO05D004638 2.3e-23 114.0 248 41.9
vmacro07897 Vaccinium macrocarpon HOM05D000463 ORTHO05D004638 1.1e-22 111.7 260 37.7
MSTRG.26081 Avicennia marina HOM05D000463 ORTHO05D004638 3.3e-22 110.2 261 38.3
Gorai.002G155900 Gossypium raimondii HOM05D000463 ORTHO05D004638 5.7e-22 109.4 254 38.2
Sc13g0002320 Simmondsia chinensis HOM05D000463 ORTHO05D004638 9.7e-22 108.6 254 40.9
Oeu063871.1 Olea europaea HOM05D000463 ORTHO05D004638 1.6e-21 107.8 255 36.5
Gohir.A01G137578 Gossypium hirsutum HOM05D000463 ORTHO05D004638 8.2e-21 105.5 254 38.2
Lsat_1_v5_gn_8_74580 Lactuca sativa HOM05D000463 ORTHO05D004638 1.2e-19 101.7 410 31.5
Actinidia22045 Actinidia chinensis HOM05D000463 ORTHO05D004638 3.4e-19 100.1 400 31.0
ECA236G3685 Erigeron canadensis HOM05D000463 ORTHO05D004638 4.5e-19 99.8 417 30.9
MD02G1306100 Malus domestica HOM05D000463 ORTHO05D004638 7.7e-19 99.0 171 43.3
Migut.K00031 Erythranthe guttata HOM05D000463 ORTHO05D004638 1.0e-18 98.6 264 36.0
HanXRQChr05g0132961 Helianthus annuus HOM05D000463 ORTHO05D004638 1.0e-18 98.6 393 31.8
TAR369G0419 Trochodendron aralioides HOM05D000463 ORTHO05D004638 6.5e-18 95.9 259 36.3
TAR633G0036 Trochodendron aralioides HOM05D000463 ORTHO05D004638 1.6e-16 91.3 256 35.2
TAR623G1638 Trochodendron aralioides HOM05D000463 ORTHO05D004638 7.9e-16 89.0 262 35.1
Oeu024493.1 Olea europaea HOM05D000463 ORTHO05D004638 2.3e-15 87.4 400 29.8
BcaB01g03433 Brassica carinata HOM05D000463 ORTHO05D094705 1.7e-13 81.3 161 41.0
Lj2P365T84 Lonicera japonica HOM05D000463 ORTHO05D004638 1.1e-12 78.6 298 31.9
MSTRG.6487 Avicennia marina HOM05D000463 ORTHO05D004638 1.8e-12 77.8 257 33.1
HanXRQChr01g0009771 Helianthus annuus HOM05D000463 ORTHO05D004638 5.3e-12 76.3 234 32.1
Gohir.A09G128600 Gossypium hirsutum HOM05D000463 ORTHO05D004638 1.5e-11 74.7 285 32.3
FAN09G4847 Fragaria x ananassa HOM05D003666 ORTHO05D004770 2.0e-11 74.3 92 54.3
Dinv14315 Davidia involucrata HOM05D000463 ORTHO05D004638 2.6e-11 73.9 241 32.8
BraA04t16002Z Brassica rapa HOM05D000463 ORTHO05D004638 5.9e-11 72.8 109 45.0
Cpa.g.sc85.55 Carica papaya HOM05D000463 ORTHO05D004638 1.0e-10 72.0 296 28.4
Actinidia32402 Actinidia chinensis HOM05D000463 ORTHO05D004638 5.0e-10 69.7 114 44.7
MD14G1056100 Malus domestica HOM05D000463 ORTHO05D004638 8.5e-10 68.9 191 33.5
unitig_744.g24406 Utricularia gibba HOM05D000463 ORTHO05D004638 2.5e-09 67.4 258 31.4
ECA248G1567 Erigeron canadensis HOM05D000463 ORTHO05D004638 7.2e-09 65.9 191 33.5
Ah.04g152520 Amaranthus hybridus HOM05D000463 ORTHO05D004638 1.6e-08 64.7 253 33.2
Sc19g0006060 Simmondsia chinensis HOM05D000463 ORTHO05D004638 2.1e-08 64.3 253 30.8
Lsat_1_v5_gn_5_163720 Lactuca sativa HOM05D000463 ORTHO05D004638 3.6e-08 63.5 229 32.3
Ciclev10013414m.g Citrus clementina HOM05D000463 ORTHO05D004638 3.0e-07 60.5 247 31.2
unitig_21.g20440 Utricularia gibba HOM05D000463 ORTHO05D004638 3.0e-07 60.5 74 59.5
Haze_03288 Corylus avellana HOM05D000463 ORTHO05D008669 6.7e-07 59.3 211 31.8
Cfa010685 Carpinus fangiana HOM05D000463 ORTHO05D008669 2.0e-06 57.8 270 30.0
Nn2g15706 Nelumbo nucifera HOM05D000463 ORTHO05D004638 2.0e-06 57.8 264 29.9
Potri.009G023300 Populus trichocarpa HOM05D000463 ORTHO05D008669 3.3e-06 57.0 234 31.6


User provided reference genes

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