Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12330 Brassica carinata HOM05D005328 ORTHO05D006049 5.2e-203 711.1 427 100.0
C04p05070 Brassica napus HOM05D005328 ORTHO05D006049 1.1e-195 686.8 448 93.5
BraA05t19414Z Brassica rapa HOM05D005328 ORTHO05D006049 7.9e-191 670.6 448 90.8
A05p04290 Brassica napus HOM05D005328 ORTHO05D006049 8.4e-185 650.6 448 89.5
BcaB02g08879 Brassica carinata HOM05D005328 ORTHO05D006049 1.4e-176 623.2 448 85.7
C03p29470 Brassica napus HOM05D005328 ORTHO05D006049 9.4e-152 540.8 460 77.4
BcaC01g05181 Brassica carinata HOM05D005328 ORTHO05D006049 2.1e-151 539.7 460 77.2
A03p24730 Brassica napus HOM05D005328 ORTHO05D006049 1.3e-145 520.4 462 74.7
BraA03t11679Z Brassica rapa HOM05D005328 ORTHO05D006049 3.8e-145 518.8 462 74.2
Sp4g26280 Schrenkiella parvula HOM05D005328 ORTHO05D006049 3.6e-143 512.3 475 74.5
BolC3t15295H Brassica oleracea HOM05D005328 ORTHO05D006049 5.9e-138 495.0 490 70.6
AL4G43160 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 2.5e-136 489.6 469 71.2
CARHR139360 Cardamine hirsuta HOM05D005328 ORTHO05D006049 4.4e-133 478.8 512 66.6
Aa31LG1G25860 Aethionema arabicum HOM05D005328 ORTHO05D006049 1.8e-131 473.4 461 63.8
Thhalv10001457m.g Eutrema salsugineum HOM05D005328 ORTHO05D006049 2.3e-129 466.5 450 69.1
AT2G44200 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 5.0e-129 465.3 501 66.9
Carub.0004s2678 Capsella rubella HOM05D005328 ORTHO05D006049 5.2e-126 455.3 526 64.1
BcaB01g03324 Brassica carinata HOM05D005328 ORTHO05D006049 3.1e-123 446.0 432 66.2
THA.LOC104804861 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 1.5e-104 384.0 462 63.0
THA.LOC104807080 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 1.5e-104 384.0 462 63.0
Thecc.04G160200 Theobroma cacao HOM05D005328 ORTHO05D006049 9.9e-93 344.7 439 54.2
Manes.03G095600 Manihot esculenta HOM05D005328 ORTHO05D006049 4.2e-91 339.3 449 53.2
Rhsim13G0137800 Rhododendron simsii HOM05D005328 ORTHO05D006049 4.3e-88 329.3 441 52.2
Hma1.2p1_0391F.1_g142830 Hydrangea macrophylla HOM05D005328 ORTHO05D006049 2.0e-85 320.5 436 54.4
COL.COLO4_12851 Corchorus olitorius HOM05D005328 ORTHO05D006049 1.3e-84 317.8 452 54.9
Sc13g0008540 Simmondsia chinensis HOM05D005328 ORTHO05D006049 1.3e-84 317.8 432 55.3
Gohir.A02G007200 Gossypium hirsutum HOM05D005328 ORTHO05D006049 3.8e-84 316.2 440 51.6
Dinv04372 Davidia involucrata HOM05D005328 ORTHO05D006049 8.4e-84 315.1 434 50.5
Gorai.005G008200 Gossypium raimondii HOM05D005328 ORTHO05D006049 1.4e-83 314.3 440 54.1
Cpa.g.sc53.124 Carica papaya HOM05D005328 ORTHO05D006049 9.3e-83 311.6 488 47.7
Gohir.D02G007001 Gossypium hirsutum HOM05D005328 ORTHO05D006049 1.6e-82 310.8 438 51.8
Eucgr.E04239 Eucalyptus grandis HOM05D005328 ORTHO05D006049 3.5e-82 309.7 453 49.9
VMungo0540G0318 Vigna mungo HOM05D005328 ORTHO05D006049 4.6e-82 309.3 481 45.1
ECA234G3238 Erigeron canadensis HOM05D005328 ORTHO05D006049 7.8e-82 308.5 442 50.5
Hund04726 Selenicereus undatus HOM05D005328 ORTHO05D006049 3.0e-81 306.6 454 56.6
Phvul.006G134100 Phaseolus vulgaris HOM05D005328 ORTHO05D006049 3.9e-81 306.2 484 48.6
CAN.G2049.4 Capsicum annuum HOM05D005328 ORTHO05D006049 5.1e-81 305.8 437 50.3
PGR042G0801 Punica granatum HOM05D005328 ORTHO05D006049 8.7e-81 305.1 449 48.8
TWI63G1825 Tripterygium wilfordii HOM05D005328 ORTHO05D006049 1.1e-80 304.7 443 52.6
Actinidia02271 Actinidia chinensis HOM05D005328 ORTHO05D006049 1.9e-80 303.9 439 50.1
CSS0022453 Camellia sinensis var. sinensis HOM05D005328 ORTHO05D006049 1.9e-80 303.9 450 49.6
Lj6g0010372 Lotus japonicus HOM05D005328 ORTHO05D006049 2.8e-79 300.1 456 48.0
Nitab4.5_0005721g0030 Nicotiana tabacum HOM05D005328 ORTHO05D006049 2.8e-79 300.1 440 48.9
Ciclev10015350m.g Citrus clementina HOM05D005328 ORTHO05D006049 3.6e-79 299.7 448 49.1
Duzib151G0457 Durio zibethinus HOM05D005328 ORTHO05D006049 3.6e-79 299.7 446 48.7
CDE03G0050 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 1.1e-78 298.1 434 55.8
THA.LOC104798630 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 4.0e-78 296.2 243 73.7
Migut.M01485 Erythranthe guttata HOM05D005328 ORTHO05D006049 5.3e-78 295.8 439 53.1
Potri.006G000200 Populus trichocarpa HOM05D005328 ORTHO05D006049 5.3e-78 295.8 472 55.9
SGA_v2.0_scaffold7G03648 Striga asiatica HOM05D005328 ORTHO05D006049 1.5e-77 294.3 431 48.0
Sopen02g029040 Solanum pennellii HOM05D005328 ORTHO05D006049 5.8e-77 292.4 442 48.0
Atru.chr1.2204 Acer truncatum HOM05D005328 ORTHO05D006049 7.6e-77 292.0 505 43.6
Glyma.15G123900 Glycine max HOM05D005328 ORTHO05D006049 3.8e-76 289.7 485 43.9
Lsat_1_v5_gn_4_65161 Lactuca sativa HOM05D005328 ORTHO05D006049 6.4e-76 288.9 433 48.3
vmacro03583 Vaccinium macrocarpon HOM05D005328 ORTHO05D006049 1.9e-75 287.3 455 45.3
Solyc02g084340.3 Solanum lycopersicum HOM05D005328 ORTHO05D006049 3.2e-75 286.6 465 46.7
HanXRQChr17g0558521 Helianthus annuus HOM05D005328 ORTHO05D006049 1.6e-74 284.3 427 52.0
HPP92_007484 Vanilla planifolia HOM05D005328 ORTHO05D006049 1.6e-74 284.3 428 47.7
Oeu016925.1 Olea europaea HOM05D005328 ORTHO05D006049 6.0e-74 282.3 467 45.8
Aqoxy6G01137 Aquilegia oxysepala HOM05D005328 ORTHO05D006049 1.0e-73 281.6 541 41.2
AUR62021212 Chenopodium quinoa HOM05D005328 ORTHO05D006049 1.8e-73 280.8 453 53.9
Nitab4.5_0002880g0010 Nicotiana tabacum HOM05D005328 ORTHO05D006049 3.9e-73 279.6 431 52.4
Ah.07g207330 Amaranthus hybridus HOM05D005328 ORTHO05D002024 8.7e-73 278.5 555 45.9
Ca_00786_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 4.3e-72 276.2 435 54.3
Ca_11373_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 4.3e-72 276.2 435 54.3
TPR.G10498 Trifolium pratense HOM05D005328 ORTHO05D006049 9.6e-72 275.0 461 49.9
unitig_748.g7855 Utricularia gibba HOM05D005328 ORTHO05D006049 1.1e-70 271.6 446 46.4
TAR626G1462 Trochodendron aralioides HOM05D005328 ORTHO05D006049 1.4e-70 271.2 451 51.7
QL05p066147 Quercus lobata HOM05D005328 ORTHO05D006049 9.0e-70 268.5 454 50.2
Peaxi162Scf00083g00091 Petunia axillaris HOM05D005328 ORTHO05D006049 1.2e-69 268.1 436 53.7
Sabra06G0000700 Salix brachista HOM05D005328 ORTHO05D006049 1.5e-69 267.7 471 51.6
arahy.Tifrunner.gnm1.ann1.B05UD4 Arachis hypogaea HOM05D005328 ORTHO05D006049 2.0e-69 267.3 471 47.8
Sed0006700 Sechium edule HOM05D005328 ORTHO05D006049 2.6e-69 266.9 510 47.3
Medtr2g028200 Medicago truncatula HOM05D005328 ORTHO05D006049 2.2e-68 263.8 516 47.1
EL10Ac3g05669 Beta vulgaris HOM05D005328 ORTHO05D006049 1.9e-67 260.8 499 46.9
CiPaw.10G085200 Carya illinoinensis HOM05D005328 ORTHO05D006049 4.2e-67 259.6 445 54.4
Lalb_Chr15g0088491 Lupinus albus HOM05D005328 ORTHO05D006049 7.1e-67 258.8 514 41.2
MD04G1014200 Malus domestica HOM05D005328 ORTHO05D006049 9.3e-67 258.5 533 46.7
PSO017G7149 Papaver somniferum HOM05D005328 ORTHO05D006049 3.9e-65 253.1 514 46.3
arahy.Tifrunner.gnm1.ann1.QMQM64 Arachis hypogaea HOM05D005328 ORTHO05D006049 3.7e-63 246.5 538 41.6
FAN17G2578 Fragaria x ananassa HOM05D005328 ORTHO05D006049 1.1e-62 245.0 583 39.5
GSVIVG01018754001 Vitis vinifera HOM05D005328 ORTHO05D006049 1.1e-62 245.0 577 43.2
Psat1g170800 Pisum sativum HOM05D005328 ORTHO05D006049 2.4e-62 243.8 490 46.9
Os08g0500200 Oryza sativa ssp. japonica HOM05D005328 ORTHO05D006049 4.0e-62 243.0 531 43.5
FAN07G1972 Fragaria x ananassa HOM05D005328 ORTHO05D006049 6.9e-62 242.3 603 40.6
FvH4_4g13451 Fragaria vesca HOM05D005328 ORTHO05D006049 2.0e-61 240.7 625 42.4
FAN12G3626 Fragaria x ananassa HOM05D005328 ORTHO05D006049 2.6e-61 240.4 623 41.9
FAN22G2230 Fragaria x ananassa HOM05D005328 ORTHO05D006049 4.9e-60 236.1 623 40.3
PSO170G6444 Papaver somniferum HOM05D005328 ORTHO05D006049 1.1e-59 235.0 556 43.7
MELO3C017635.2 Cucumis melo HOM05D005328 ORTHO05D006049 1.6e-58 231.1 443 42.2
RcHm_v2.0_Chr4g0414011 Rosa chinensis HOM05D005328 ORTHO05D006049 1.6e-58 231.1 528 45.5
SalBow8G1780 Salvia bowleyana HOM05D005328 ORTHO05D006049 1.6e-58 231.1 523 44.4
ClCG07G017100 Citrullus lanatus HOM05D005328 ORTHO05D006049 3.5e-58 229.9 441 41.5
Glyma.09G018000 Glycine max HOM05D005328 ORTHO05D006049 3.5e-58 229.9 556 37.2
Cc09_g00040 Coffea canephora HOM05D005328 ORTHO05D006049 7.9e-58 228.8 578 36.3
CsaV3_4G004310 Cucumis sativus L. HOM05D005328 ORTHO05D006049 8.7e-57 225.3 441 42.2
Prupe.1G161200 Prunus persica HOM05D005328 ORTHO05D006049 7.4e-56 222.2 597 38.5
DCAR_022839 Daucus carota HOM05D005328 ORTHO05D006049 2.8e-55 220.3 167 72.5
PGSC0003DMG400003630 Solanum tuberosum HOM05D005328 ORTHO05D006049 1.1e-54 218.4 623 37.6
SMO143G0138 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 2.5e-51 207.2 437 44.2
SEGI_06923 Sequoiadendron giganteum HOM05D005328 ORTHO05D006049 2.5e-51 207.2 625 33.9
AagrBONN_evm.TU.Sc2ySwM_228.5016 Anthoceros agrestis HOM05D005328 ORTHO05D006049 1.5e-48 198.0 224 56.2
Pp3c3_9980 Physcomitrium patens HOM05D005328 ORTHO05D006049 3.3e-48 196.8 173 64.7
Zm00001eb034090 Zea mays HOM05D005328 ORTHO05D006049 2.9e-44 183.7 512 40.2
BcaB02g08878 Brassica carinata HOM05D005328 ORTHO05D006049 1.6e-42 177.9 112 88.4
Carub.0004s2677 Capsella rubella HOM05D005328 ORTHO05D006049 2.8e-39 167.2 180 58.9
SMO114G0026 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 3.7e-39 166.8 409 36.4
AUR62016004 Chenopodium quinoa HOM05D005328 ORTHO05D006049 2.2e-36 157.5 355 45.6
AT2G44195 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 9.4e-35 152.1 153 59.5
Nn1g08402 Nelumbo nucifera HOM05D005328 ORTHO05D006049 9.4e-35 152.1 440 35.2
CBR_g2953 Chara braunii HOM05D005328 ORTHO05D006049 1.2e-34 151.8 181 51.9
CDE06G1717 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 4.8e-31 139.8 85 82.4
ATR0751G077 Amborella trichopoda HOM05D005328 ORTHO05D006049 8.2e-31 139.0 117 67.5
Mapoly0104s0032 Marchantia polymorpha HOM05D005328 ORTHO05D006049 1.8e-30 137.9 382 34.6
QL05p065813 Quercus lobata HOM05D005328 ORTHO05D006049 1.8e-30 137.9 91 78.0
AUR62016005 Chenopodium quinoa HOM05D005328 ORTHO05D006049 7.0e-30 136.0 85 81.2
ATR0751G111 Amborella trichopoda HOM05D005328 ORTHO05D006049 2.9e-28 130.6 366 37.7
Prupe.1G162300 Prunus persica HOM05D005328 ORTHO05D006049 6.1e-26 122.9 355 43.7
SMO117G0350 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 3.0e-25 120.6 429 31.2
AL4G43150 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 4.8e-23 113.2 179 48.0
Zm00001eb097520 Zea mays HOM05D005328 ORTHO05D006049 7.0e-22 109.4 136 52.2
Prupe.1G161500 Prunus persica HOM05D005328 ORTHO05D006049 1.6e-21 108.2 130 52.3
DCAR_022842 Daucus carota HOM05D005328 ORTHO05D006049 2.7e-21 107.5 152 52.6
Cre01.g021400 Chlamydomonas reinhardtii HOM05D005328 ORTHO05D006049 1.9e-19 101.3 184 37.0
CDE06G0152 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 4.2e-19 100.1 155 47.7
SMO246G0007 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 6.8e-17 92.8 63 73.0
PRCOL_00001794 Prasinoderma coloniale HOM05D005328 ORTHO05D006049 2.0e-16 91.3 180 35.0
SMO117G0022 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.3e-15 88.6 119 46.2
TAR371G0561 Trochodendron aralioides HOM05D005328 ORTHO05D006049 1.7e-15 88.2 97 55.7
SMO117G0182 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.1e-14 85.5 100 48.0
VMungo1383G0559 Vigna mungo HOM05D005328 ORTHO05D006049 1.2e-13 82.0 53 77.4
SMO117G0245 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 2.0e-13 81.3 91 47.3
BcaB05g23360 Brassica carinata HOM05D000598 ORTHO05D006049 8.0e-10 69.3 48 75.0
Actinidia26768 Actinidia chinensis HOM05D005328 ORTHO05D006049 2.6e-08 64.3 90 44.4
Sabra16G0007800 Salix brachista HOM05D000040 ORTHO05D001305 9.8e-08 62.4 107 40.2
Haze_07067 Corylus avellana HOM05D005328 ORTHO05D006049 3.7e-07 60.5 227 32.2


User provided reference genes

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