Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12086 Brassica carinata HOM05D005501 ORTHO05D007485 3.8e-48 194.5 98 100.0
C04p08020 Brassica napus HOM05D005501 ORTHO05D007485 4.6e-46 187.6 95 100.0
Sp4g27290 Schrenkiella parvula HOM05D005501 ORTHO05D007485 4.1e-34 147.9 80 92.5
SpUn0031_0030 Schrenkiella parvula HOM05D005501 ORTHO05D007485 4.1e-34 147.9 80 92.5
BcaB02g08946 Brassica carinata HOM05D005501 ORTHO05D007485 9.1e-34 146.7 80 92.5
BolC4t22243H Brassica oleracea HOM05D005501 ORTHO05D007485 1.5e-33 146.0 80 92.5
BcaC02g12231 Brassica carinata HOM05D005501 ORTHO05D007485 3.4e-33 144.8 80 91.2
C04p06180 Brassica napus HOM05D005501 ORTHO05D007485 3.4e-33 144.8 80 91.2
A05p05250 Brassica napus HOM05D005501 ORTHO05D007485 5.9e-33 144.1 80 91.2
BraA05t19495Z Brassica rapa HOM05D005501 ORTHO05D007485 5.9e-33 144.1 80 91.2
Thhalv10001427m.g Eutrema salsugineum HOM05D005501 ORTHO05D007485 1.0e-32 143.3 80 90.0
CARHR140480 Cardamine hirsuta HOM05D005501 ORTHO05D007485 1.7e-32 142.5 80 90.0
AL4G44370 Arabidopsis lyrata HOM05D005501 ORTHO05D007485 2.9e-32 141.7 80 88.8
Aa31LG1G26800 Aethionema arabicum HOM05D005501 ORTHO05D007485 3.8e-32 141.4 80 90.0
AT2G45270 Arabidopsis thaliana HOM05D005501 ORTHO05D007485 3.8e-32 141.4 80 87.5
BcaB02g08945 Brassica carinata HOM05D005501 ORTHO05D007485 1.4e-29 132.9 105 70.5
Carub.0004s2787 Capsella rubella HOM05D005501 ORTHO05D007485 2.3e-29 132.1 80 83.8
THA.LOC104817237 Tarenaya hassleriana HOM05D005501 ORTHO05D007485 9.7e-28 126.7 80 76.2
RcHm_v2.0_Chr1g0349931 Rosa chinensis HOM05D005501 ORTHO05D007485 7.7e-25 117.1 80 71.2
FvH4_7g11490 Fragaria vesca HOM05D005501 ORTHO05D007485 1.0e-24 116.7 80 72.5
FAN06G2192 Fragaria x ananassa HOM05D005501 ORTHO05D007485 1.0e-24 116.7 80 72.5
FAN10G2758 Fragaria x ananassa HOM05D005501 ORTHO05D007485 1.0e-24 116.7 80 72.5
FAN06G3216 Fragaria x ananassa HOM05D005501 ORTHO05D007485 1.3e-24 116.3 80 71.2
FAN03G0203 Fragaria x ananassa HOM05D005501 ORTHO05D007485 1.7e-24 115.9 80 72.5
FAN01G2666 Fragaria x ananassa HOM05D005501 ORTHO05D007485 2.2e-24 115.5 80 72.5
Hund17031 Selenicereus undatus HOM05D005501 ORTHO05D007485 2.2e-24 115.5 80 70.0
FAN10G2689 Fragaria x ananassa HOM05D005501 ORTHO05D007485 2.9e-24 115.2 80 71.2
Ca_19945_v3 Cicer arietinum L. HOM05D005501 ORTHO05D007485 3.8e-24 114.8 80 71.2
SGA_v2.0_scaffold95G28910 Striga asiatica HOM05D005501 ORTHO05D007485 5.0e-24 114.4 80 71.2
Psat0s3070g0040 Pisum sativum HOM05D005501 ORTHO05D007485 6.5e-24 114.0 80 70.0
TPR.G7589 Trifolium pratense HOM05D005501 ORTHO05D007485 8.5e-24 113.6 80 70.0
GSVIVG01027664001 Vitis vinifera HOM05D005501 ORTHO05D007485 1.1e-23 113.2 80 68.8
Cpa.g.sc18.102 Carica papaya HOM05D005501 ORTHO05D007485 1.5e-23 112.8 80 67.5
COL.COLO4_12526 Corchorus olitorius HOM05D005501 ORTHO05D007485 1.5e-23 112.8 80 68.8
Sabra14G0047700 Salix brachista HOM05D005501 ORTHO05D007485 1.9e-23 112.5 76 71.1
Oeu055503.2 Olea europaea HOM05D005501 ORTHO05D007485 2.5e-23 112.1 76 75.0
Potri.014G067800 Populus trichocarpa HOM05D005501 ORTHO05D007485 2.5e-23 112.1 80 67.5
QL08p052809 Quercus lobata HOM05D005501 ORTHO05D007485 2.5e-23 112.1 80 67.5
MSTRG.20738 Avicennia marina HOM05D005501 ORTHO05D007485 3.2e-23 111.7 80 71.2
MD02G1206900 Malus domestica HOM05D005501 ORTHO05D007485 3.2e-23 111.7 76 71.1
vmacro13416 Vaccinium macrocarpon HOM05D005501 ORTHO05D007485 4.2e-23 111.3 79 69.6
HanXRQChr16g0519981 Helianthus annuus HOM05D005501 ORTHO05D007485 5.5e-23 110.9 80 70.0
CANSAT56G2357 Cannabis sativa HOM05D005501 ORTHO05D007485 7.2e-23 110.5 80 67.5
Gohir.A08G135800 Gossypium hirsutum HOM05D005501 ORTHO05D007485 7.2e-23 110.5 80 67.5
Gohir.D08G156600 Gossypium hirsutum HOM05D005501 ORTHO05D007485 7.2e-23 110.5 80 67.5
Gorai.004G162900 Gossypium raimondii HOM05D005501 ORTHO05D007485 7.2e-23 110.5 80 67.5
Medtr4g024920 Medicago truncatula HOM05D005501 ORTHO05D007485 7.2e-23 110.5 80 68.8
VMungo0331G1483 Vigna mungo HOM05D005501 ORTHO05D007485 7.2e-23 110.5 80 67.5
Lj3g0016597 Lotus japonicus HOM05D005501 ORTHO05D007485 9.4e-23 110.2 80 67.5
Prupe.2G143300 Prunus persica HOM05D005501 ORTHO05D007485 9.4e-23 110.2 80 66.2
Sc02g0002650 Simmondsia chinensis HOM05D005501 ORTHO05D007485 9.4e-23 110.2 80 67.5
AUR62004192 Chenopodium quinoa HOM05D005501 ORTHO05D007485 1.2e-22 109.8 80 68.8
Duzib133G0079 Durio zibethinus HOM05D005501 ORTHO05D007485 1.2e-22 109.8 79 67.1
Eucgr.E01449 Eucalyptus grandis HOM05D005501 ORTHO05D007485 1.2e-22 109.8 80 66.2
Glyma.03G027900 Glycine max HOM05D005501 ORTHO05D007485 1.2e-22 109.8 80 67.5
Lj7C531T10 Lonicera japonica HOM05D005501 ORTHO05D007485 1.2e-22 109.8 80 67.5
EL10Ac1g00871 Beta vulgaris HOM05D005501 ORTHO05D007485 1.6e-22 109.4 80 65.0
Manes.01G266900 Manihot esculenta HOM05D005501 ORTHO05D007485 1.6e-22 109.4 80 67.5
Sed0021448 Sechium edule HOM05D005501 ORTHO05D007485 1.6e-22 109.4 80 67.5
Nn1g01133 Nelumbo nucifera HOM05D005501 ORTHO05D007485 2.1e-22 109.0 79 68.4
Nitab4.5_0003912g0080 Nicotiana tabacum HOM05D005501 ORTHO05D007485 2.7e-22 108.6 80 67.5
unitig_37.g12896 Utricularia gibba HOM05D005501 ORTHO05D007485 2.7e-22 108.6 80 68.8
CSS0010588 Camellia sinensis var. sinensis HOM05D005501 ORTHO05D007485 3.6e-22 108.2 80 66.2
CSS0024830 Camellia sinensis var. sinensis HOM05D005501 ORTHO05D007485 3.6e-22 108.2 80 66.2
DCAR_002088 Daucus carota HOM05D005501 ORTHO05D007485 3.6e-22 108.2 80 65.0
Phvul.010G081700 Phaseolus vulgaris HOM05D005501 ORTHO05D007485 3.6e-22 108.2 80 65.0
ClCG05G002370 Citrullus lanatus HOM05D005501 ORTHO05D007485 4.7e-22 107.8 80 67.5
Dinv43691 Davidia involucrata HOM05D005501 ORTHO05D007485 4.7e-22 107.8 80 66.2
TWI14G0369 Tripterygium wilfordii HOM05D005501 ORTHO05D007485 4.7e-22 107.8 80 66.2
arahy.Tifrunner.gnm1.ann1.J20DWG Arachis hypogaea HOM05D005501 ORTHO05D007485 6.1e-22 107.5 80 63.8
CiPaw.01G263800 Carya illinoinensis HOM05D005501 ORTHO05D007485 8.0e-22 107.1 80 65.0
Sed0024444 Sechium edule HOM05D005501 ORTHO05D007485 8.0e-22 107.1 80 67.5
AUR62025959 Chenopodium quinoa HOM05D005501 ORTHO05D007485 1.0e-21 106.7 80 67.5
Migut.B01618 Erythranthe guttata HOM05D005501 ORTHO05D007485 1.0e-21 106.7 80 66.2
TAR374G0513 Trochodendron aralioides HOM05D005501 ORTHO05D007485 1.0e-21 106.7 76 69.7
TAR374G1545 Trochodendron aralioides HOM05D005501 ORTHO05D007485 1.0e-21 106.7 76 69.7
CsaV3_3G009810 Cucumis sativus L. HOM05D005501 ORTHO05D007485 1.8e-21 105.9 80 66.2
Lsat_1_v5_gn_4_43120 Lactuca sativa HOM05D005501 ORTHO05D007485 1.8e-21 105.9 80 67.5
Aqoxy7G00665 Aquilegia oxysepala HOM05D005501 ORTHO05D007485 2.3e-21 105.5 80 66.2
AUR62013652 Chenopodium quinoa HOM05D005501 ORTHO05D007485 2.3e-21 105.5 80 67.5
MELO3C006202.2 Cucumis melo HOM05D005501 ORTHO05D007485 3.0e-21 105.1 80 65.0
Nitab4.5_0001329g0140 Nicotiana tabacum HOM05D005501 ORTHO05D007485 3.0e-21 105.1 80 65.0
CAN.G295.11 Capsicum annuum HOM05D005501 ORTHO05D007485 4.0e-21 104.8 80 65.0
Cc02_g24090 Coffea canephora HOM05D005501 ORTHO05D007485 5.2e-21 104.4 80 63.8
ECA234G2802 Erigeron canadensis HOM05D003566 ORTHO05D007485 5.2e-21 104.4 80 65.0
Lalb_Chr07g0189951 Lupinus albus HOM05D005501 ORTHO05D007485 6.7e-21 104.0 80 63.8
PGSC0003DMG401007021 Solanum tuberosum HOM05D005501 ORTHO05D007485 8.8e-21 103.6 80 63.8
arahy.Tifrunner.gnm1.ann1.M89JWR Arachis hypogaea HOM05D005501 ORTHO05D007485 2.0e-20 102.4 96 55.2
CDE11G1124 Ceratophyllum demersum HOM05D005501 ORTHO05D007485 2.0e-20 102.4 93 57.0
Peaxi162Scf00959g00124 Petunia axillaris HOM05D005501 ORTHO05D007485 2.0e-20 102.4 80 63.8
Solyc05g050940.4 Solanum lycopersicum HOM05D005501 ORTHO05D007485 3.3e-20 101.7 80 63.8
Sopen05g029410 Solanum pennellii HOM05D005501 ORTHO05D007485 4.4e-20 101.3 74 67.6
TAR375G0004 Trochodendron aralioides HOM05D005501 ORTHO05D007485 4.4e-20 101.3 80 62.5
Zm00001eb129920 Zea mays HOM05D005501 ORTHO05D007485 4.4e-20 101.3 76 63.2
MBI04_g44162_MAGBIO Magnolia biondii HOM05D005501 ORTHO05D007485 7.4e-20 100.5 74 67.6
PSO478G3019 Papaver somniferum HOM05D005501 ORTHO05D007485 9.7e-20 100.1 80 65.0
Ah.05g176650 Amaranthus hybridus HOM05D005501 ORTHO05D007485 2.8e-19 98.6 76 63.2
SEGI_07028 Sequoiadendron giganteum HOM05D005501 ORTHO05D007485 2.8e-19 98.6 76 64.5
ATR0757G194 Amborella trichopoda HOM05D005501 ORTHO05D007485 3.7e-19 98.2 74 66.2
PSO782G1940 Papaver somniferum HOM05D005501 ORTHO05D007485 8.2e-19 97.1 80 62.5
HPP92_000383 Vanilla planifolia HOM05D005501 ORTHO05D007485 3.1e-18 95.1 78 64.1
Pp3c15_10750 Physcomitrium patens HOM05D005501 ORTHO05D007485 3.5e-17 91.7 80 57.5
RcHm_v2.0_Chr1g0349801 Rosa chinensis HOM05D005501 ORTHO05D007485 2.5e-15 85.5 54 75.9
Mapoly0019s0039 Marchantia polymorpha HOM05D005501 ORTHO05D007485 3.2e-15 85.1 76 57.9
SMO271G0013 Selaginella moellendorffii HOM05D005501 ORTHO05D007485 1.6e-14 82.8 76 51.3
AagrBONN_evm.TU.Sc2ySwM_117.1161 Anthoceros agrestis HOM05D005501 ORTHO05D007485 2.1e-14 82.4 76 52.6
CBR_g10969 Chara braunii HOM05D005052 ORTHO05D006226 8.0e-14 80.5 79 53.2
Thecc.01G378900 Theobroma cacao HOM05D005501 ORTHO05D007485 1.8e-13 79.3 53 69.8
Actinidia12246 Actinidia chinensis HOM05D005501 ORTHO05D007485 1.2e-12 76.6 108 44.4
arahy.Tifrunner.gnm1.ann1.R3VUJN Arachis hypogaea HOM05D005501 ORTHO05D002299 2.2e-11 72.4 81 50.6
Cre14.g615500 Chlamydomonas reinhardtii HOM05D005501 ORTHO05D007485 5.4e-10 67.8 66 50.0


User provided reference genes

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