Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11169 Brassica carinata HOM05D005041 ORTHO05D006003 2.2e-224 781.9 380 100.0
C04p19760 Brassica napus HOM05D005041 ORTHO05D006003 2.2e-224 781.9 380 100.0
BolC4t23509H Brassica oleracea HOM05D005041 ORTHO05D006003 2.2e-224 781.9 380 100.0
A05p14760 Brassica napus HOM05D005041 ORTHO05D006003 5.9e-222 773.9 380 98.9
BcaB02g10347 Brassica carinata HOM05D005041 ORTHO05D006003 3.2e-220 768.1 380 97.9
A03p17270 Brassica napus HOM05D005041 ORTHO05D006003 1.6e-219 765.8 380 97.6
BraA03t11001Z Brassica rapa HOM05D005041 ORTHO05D006003 3.6e-219 764.6 380 97.4
BraA05t20405Z Brassica rapa HOM05D005041 ORTHO05D006003 7.9e-219 763.5 382 97.6
BcaB01g04071 Brassica carinata HOM05D005041 ORTHO05D006003 1.1e-217 759.6 380 96.6
C03p20380 Brassica napus HOM05D005041 ORTHO05D006003 2.0e-217 758.8 380 96.1
BolC3t14416H Brassica oleracea HOM05D005041 ORTHO05D006003 2.0e-217 758.8 380 96.1
Sp4g13380 Schrenkiella parvula HOM05D005041 ORTHO05D006003 2.4e-215 751.9 380 95.5
AT2G30910 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 3.3e-209 731.5 382 93.7
Carub.0004s1211 Capsella rubella HOM05D005041 ORTHO05D006003 2.4e-207 725.3 382 93.2
AL4G25850 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 7.0e-207 723.8 382 92.9
AL283U10030 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 2.6e-206 721.8 382 92.7
A04p23600 Brassica napus HOM05D005041 ORTHO05D006003 1.9e-196 689.1 391 87.5
Aa31LG5G6010 Aethionema arabicum HOM05D005041 ORTHO05D006003 2.3e-194 682.2 412 82.5
AT2G31300 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 8.8e-194 680.2 361 92.8
C04p60050 Brassica napus HOM05D005041 ORTHO05D006003 9.1e-191 670.2 366 91.8
BolC4t27508H Brassica oleracea HOM05D005041 ORTHO05D006003 8.6e-189 663.7 376 89.1
Thhalv10017625m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 3.1e-183 645.2 328 96.0
TWI63G0392 Tripterygium wilfordii HOM05D005041 ORTHO05D006003 2.0e-182 642.5 373 79.1
GSVIVG01020787001 Vitis vinifera HOM05D005041 ORTHO05D006003 5.9e-182 641.0 373 79.4
Ciclev10015615m.g Citrus clementina HOM05D005041 ORTHO05D006003 2.3e-181 639.0 380 78.2
Eucgr.K01189 Eucalyptus grandis HOM05D005041 ORTHO05D006003 2.9e-181 638.6 375 78.9
Atru.chr6.3564 Acer truncatum HOM05D005041 ORTHO05D006003 2.5e-180 635.6 377 77.2
BcaB06g28392 Brassica carinata HOM05D005041 ORTHO05D006003 2.5e-180 635.6 335 92.8
PGR142G0148 Punica granatum HOM05D005041 ORTHO05D006003 2.5e-180 635.6 373 78.8
Thecc.01G157600 Theobroma cacao HOM05D005041 ORTHO05D006003 4.3e-180 634.8 372 79.6
COL.COLO4_33676 Corchorus olitorius HOM05D005041 ORTHO05D006003 5.6e-180 634.4 372 79.3
Lalb_Chr20g0114161 Lupinus albus HOM05D005041 ORTHO05D006003 3.0e-178 628.6 375 77.9
Manes.02G087100 Manihot esculenta HOM05D005041 ORTHO05D006003 4.0e-178 628.2 373 77.7
BraA04t17886Z Brassica rapa HOM05D005041 ORTHO05D006003 3.4e-177 625.2 374 84.2
CSS0038733 Camellia sinensis var. sinensis HOM05D005041 ORTHO05D006003 1.3e-176 623.2 373 76.1
Actinidia11183 Actinidia chinensis HOM05D005041 ORTHO05D006003 3.7e-176 621.7 373 76.1
MELO3C031066.2 Cucumis melo HOM05D005041 ORTHO05D006003 8.3e-176 620.5 373 76.1
Nn3g21016 Nelumbo nucifera HOM05D005041 ORTHO05D006003 8.3e-176 620.5 373 77.7
Dinv26517 Davidia involucrata HOM05D005041 ORTHO05D006003 1.1e-175 620.2 372 76.3
CsaV3_6G037940 Cucumis sativus L. HOM05D005041 ORTHO05D006003 2.0e-174 615.9 375 76.3
Sed0005186 Sechium edule HOM05D005041 ORTHO05D006003 2.7e-174 615.5 373 75.9
Gohir.A10G154500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 3.5e-174 615.1 373 76.9
Gorai.011G123100 Gossypium raimondii HOM05D005041 ORTHO05D006003 3.5e-174 615.1 373 76.9
Peaxi162Scf00828g00019 Petunia axillaris HOM05D005041 ORTHO05D006003 3.5e-174 615.1 377 75.6
THA.LOC104826236 Tarenaya hassleriana HOM05D005041 ORTHO05D006003 3.5e-174 615.1 375 79.7
Gohir.D10G111500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 1.7e-173 612.8 373 76.7
Cc05_g09060 Coffea canephora HOM05D005041 ORTHO05D006003 3.9e-173 611.7 378 74.6
Ah.01g004760 Amaranthus hybridus HOM05D005041 ORTHO05D006003 8.6e-173 610.5 372 76.1
Hma1.2p1_0178F.1_g078240 Hydrangea macrophylla HOM05D005041 ORTHO05D006003 1.9e-172 609.4 369 76.4
MD09G1156800 Malus domestica HOM05D005041 ORTHO05D006003 7.3e-172 607.4 382 75.1
EL10Ac9g21025 Beta vulgaris HOM05D005041 ORTHO05D006003 1.2e-169 600.1 372 75.8
Solyc05g006470.4 Solanum lycopersicum HOM05D005041 ORTHO05D006003 1.2e-169 600.1 378 73.8
Lsat_1_v5_gn_4_52360 Lactuca sativa HOM05D005041 ORTHO05D006003 5.8e-169 597.8 379 74.1
ECA234G0116 Erigeron canadensis HOM05D005041 ORTHO05D006003 7.5e-169 597.4 377 72.7
Migut.D00514 Erythranthe guttata HOM05D005041 ORTHO05D006003 7.5e-169 597.4 379 76.0
HanXRQChr16g0518211 Helianthus annuus HOM05D005041 ORTHO05D006003 2.2e-168 595.9 377 74.3
Manes.01G129200 Manihot esculenta HOM05D005041 ORTHO05D006003 8.3e-168 594.0 373 73.2
PSO541G3312 Papaver somniferum HOM05D005041 ORTHO05D006003 1.1e-167 593.6 372 72.8
PSO675G8631 Papaver somniferum HOM05D005041 ORTHO05D006003 3.2e-167 592.0 372 72.8
DCAR_013571 Daucus carota HOM05D005041 ORTHO05D006003 7.0e-167 590.9 370 73.0
Nitab4.5_0004310g0020 Nicotiana tabacum HOM05D005041 ORTHO05D006003 2.7e-166 589.0 414 67.9
Aqoxy1G01950 Aquilegia oxysepala HOM05D005041 ORTHO05D006003 2.3e-165 585.9 373 74.3
Sed0006581 Sechium edule HOM05D005041 ORTHO05D006003 2.3e-165 585.9 341 78.9
MSTRG.15060 Avicennia marina HOM05D005041 ORTHO05D006003 3.0e-165 585.5 369 74.5
MBI06_g08528_MAGBIO Magnolia biondii HOM05D005041 ORTHO05D006003 7.3e-164 580.9 380 72.4
TPR.G13543 Trifolium pratense HOM05D005041 ORTHO05D006003 7.3e-164 580.9 393 71.0
ClCG09G022250 Citrullus lanatus HOM05D005041 ORTHO05D006003 2.1e-163 579.3 382 72.0
Os02g0817200 Oryza sativa ssp. japonica HOM05D005041 ORTHO05D006003 3.6e-163 578.6 370 72.4
SGA_v2.0_scaffold1G00710 Striga asiatica HOM05D005041 ORTHO05D006003 1.1e-162 577.0 375 72.3
Zm00001eb258930 Zea mays HOM05D005041 ORTHO05D006003 1.8e-162 576.2 370 71.1
CDE10G0970 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 9.9e-161 570.5 369 72.6
vmacro12428 Vaccinium macrocarpon HOM05D005041 ORTHO05D006003 7.1e-159 564.3 383 71.0
SGA_v2.0_scaffold8G04656 Striga asiatica HOM05D005041 ORTHO05D006003 1.2e-158 563.5 375 70.4
Glyma.10G216300 Glycine max HOM05D005041 ORTHO05D006003 5.1e-157 558.1 335 77.6
FAN14G1924 Fragaria x ananassa HOM05D000054 ORTHO05D006003 8.6e-157 557.4 350 74.9
CiPaw.04G135200 Carya illinoinensis HOM05D005041 ORTHO05D006003 6.2e-155 551.2 373 69.7
unitig_37.g12857 Utricularia gibba HOM05D005041 ORTHO05D006003 1.1e-154 550.4 368 69.6
VMungo0540G2345 Vigna mungo HOM05D005041 ORTHO05D006003 4.0e-154 548.5 335 76.1
CDE10G1309 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 1.5e-153 546.6 369 71.3
TAR626G0242 Trochodendron aralioides HOM05D005041 ORTHO05D006003 1.5e-153 546.6 370 69.7
Cfa022568 Carpinus fangiana HOM05D005041 ORTHO05D006003 5.8e-153 544.7 374 69.0
Dinv06276 Davidia involucrata HOM05D005041 ORTHO05D006003 3.8e-152 542.0 321 78.2
FAN02G2360 Fragaria x ananassa HOM05D000054 ORTHO05D006003 4.1e-151 538.5 377 68.7
Potri.014G141700 Populus trichocarpa HOM05D005041 ORTHO05D006003 4.6e-150 535.0 377 67.6
Haze_13460 Corylus avellana HOM05D005041 ORTHO05D006003 6.0e-150 534.6 382 67.0
Prupe.3G170000 Prunus persica HOM05D005041 ORTHO05D006003 6.0e-150 534.6 373 68.4
FAN09G1464 Fragaria x ananassa HOM05D000054 ORTHO05D006003 6.2e-147 524.6 373 67.0
MD17G1143300 Malus domestica HOM05D005041 ORTHO05D006003 1.8e-146 523.1 373 67.0
QL08p043305 Quercus lobata HOM05D005041 ORTHO05D006003 1.8e-146 523.1 373 67.0
Lju124A34T49 Lonicera japonica HOM05D005041 ORTHO05D006003 7.6e-145 517.7 281 83.6
Medtr3g049070 Medicago truncatula HOM05D005041 ORTHO05D006003 1.3e-144 516.9 375 66.4
RcHm_v2.0_Chr2g0150441 Rosa chinensis HOM05D005041 ORTHO05D006003 1.3e-144 516.9 373 65.7
HPP92_025809 Vanilla planifolia HOM05D005041 ORTHO05D006003 1.3e-144 516.9 370 65.9
Ca_14633_v3 Cicer arietinum L. HOM05D005041 ORTHO05D006003 4.9e-144 515.0 375 66.4
Hund00824 Selenicereus undatus HOM05D005041 ORTHO05D006003 8.4e-144 514.2 368 66.0
CANSAT11G1484 Cannabis sativa HOM05D005041 ORTHO05D006003 1.4e-143 513.5 374 65.8
Glyma.18G103800 Glycine max HOM05D005041 ORTHO05D006003 2.7e-142 509.2 375 65.6
Glyma.08G311700 Glycine max HOM05D005041 ORTHO05D006003 7.8e-142 507.7 375 65.9
Lj6g0019726 Lotus japonicus HOM05D005041 ORTHO05D006003 1.7e-141 506.5 375 65.6
Psat5g186840 Pisum sativum HOM05D005041 ORTHO05D006003 9.6e-140 500.7 375 64.5
Phvul.005G127400 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 1.6e-139 500.0 375 64.5
arahy.Tifrunner.gnm1.ann1.5LHA9P Arachis hypogaea HOM05D005041 ORTHO05D006003 2.8e-139 499.2 375 65.1
arahy.Tifrunner.gnm1.ann1.RC242R Arachis hypogaea HOM05D005041 ORTHO05D006003 2.8e-139 499.2 375 65.1
VMungo1080G0034 Vigna mungo HOM05D005041 ORTHO05D006003 1.4e-138 496.9 375 64.0
Nitab4.5_0002312g0010 Nicotiana tabacum HOM05D005041 ORTHO05D006003 4.0e-138 495.4 375 63.2
SMO364G0091 Selaginella moellendorffii HOM05D005041 ORTHO05D006003 1.7e-136 490.0 379 59.9
Cpa.g.sc50.61 Carica papaya HOM05D005041 ORTHO05D006003 3.8e-136 488.8 253 88.1
Lj2A374G38 Lonicera japonica HOM05D005041 ORTHO05D006003 1.0e-133 480.7 349 68.8
Thhalv10017010m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 1.1e-132 477.2 383 67.4
Sc12g0003800 Simmondsia chinensis HOM05D005041 ORTHO05D006003 1.5e-132 476.9 377 61.3
Phvul.006G036500 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 9.0e-130 467.6 375 61.3
Sopen05g002420 Solanum pennellii HOM05D005041 ORTHO05D006003 1.7e-128 463.4 257 81.7
AagrBONN_evm.TU.Sc2ySwM_228.2899 Anthoceros agrestis HOM05D005041 ORTHO05D006003 3.5e-126 455.7 366 60.1
Mapoly0116s0052 Marchantia polymorpha HOM05D005041 ORTHO05D006003 1.0e-125 454.1 387 55.8
Zm00001eb191400 Zea mays HOM05D005041 ORTHO05D006003 1.8e-122 443.4 253 78.3
Duzib187G1062 Durio zibethinus HOM05D005041 ORTHO05D006003 3.4e-121 439.1 373 60.1
Mapoly0090s0056 Marchantia polymorpha HOM05D005041 ORTHO05D006003 4.5e-121 438.7 387 54.0
FvH4_6g37551 Fragaria vesca HOM05D005041 ORTHO05D006003 2.5e-119 433.0 281 72.2
Pp3c19_12930 Physcomitrium patens HOM05D005041 ORTHO05D006003 2.5e-119 433.0 386 54.4
Pp3c18_4810 Physcomitrium patens HOM05D005041 ORTHO05D006003 1.8e-117 426.8 382 53.7
AUR62031794 Chenopodium quinoa HOM05D005041 ORTHO05D006003 5.9e-105 385.2 306 64.1
ATR0787G051 Amborella trichopoda HOM05D005041 ORTHO05D006003 2.1e-102 376.7 224 76.3
AUR62024003 Chenopodium quinoa HOM05D005041 ORTHO05D006003 1.8e-93 347.1 309 56.0
CBR_g18699 Chara braunii HOM05D005041 ORTHO05D006003 6.7e-85 318.5 532 37.2
CARHR124910 Cardamine hirsuta HOM05D005041 ORTHO05D006003 5.9e-81 305.4 147 96.6
CARHR124390 Cardamine hirsuta HOM05D005041 ORTHO05D006003 6.1e-78 295.4 144 95.1
Nn6g34435 Nelumbo nucifera HOM05D005041 ORTHO05D006003 4.7e-70 269.2 218 61.5
SalBow4G0308 Salvia bowleyana HOM05D005041 ORTHO05D006003 6.1e-70 268.9 213 64.3
Sabra14G0106900 Salix brachista HOM05D005041 ORTHO05D006003 4.0e-69 266.2 218 61.9
Sopen05g002410 Solanum pennellii HOM05D005041 ORTHO05D006003 2.6e-68 263.5 271 50.6
Cfa026893 Carpinus fangiana HOM05D005041 ORTHO05D006003 7.8e-65 251.9 370 37.6
SHI23137 Sapria himalayana HOM05D005041 ORTHO05D006003 5.6e-55 219.2 134 73.9
Oeu032123.1 Olea europaea HOM05D005041 ORTHO05D006003 5.2e-53 212.6 146 68.5
Actinidia12824 Actinidia chinensis HOM05D005041 ORTHO05D006003 1.2e-52 211.5 144 68.8
TAR383G0169 Trochodendron aralioides HOM05D005041 ORTHO05D006003 6.4e-43 179.1 112 70.5
Cre16.g648100 Chlamydomonas reinhardtii HOM05D005041 ORTHO05D006003 1.2e-41 174.9 295 32.9
SEGI_31471 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 4.3e-39 166.4 139 56.8
SEGI_36522 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 2.2e-35 154.1 92 73.9
Haze_27289 Corylus avellana HOM05D005041 ORTHO05D006003 2.5e-31 140.6 316 29.4
Duzib147G0812 Durio zibethinus HOM05D005041 ORTHO05D006003 9.3e-26 122.1 146 47.9
BolC2t10705H Brassica oleracea HOM05D005041 ORTHO05D006003 2.3e-24 117.5 57 89.5
CARHR285180 Cardamine hirsuta HOM05D005041 ORTHO05D006003 7.3e-23 112.5 52 96.2
SEGI_23574 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 1.1e-21 108.6 66 72.7
Duzib147G0224 Durio zibethinus HOM05D005041 ORTHO05D006003 1.8e-21 107.8 59 81.4
CARHR059870 Cardamine hirsuta HOM05D005041 ORTHO05D006003 6.7e-16 89.4 57 78.9
Lsat_1_v5_gn_9_20280 Lactuca sativa HOM05D005041 ORTHO05D002973 8.1e-14 82.4 76 55.3
AUR62031783 Chenopodium quinoa HOM05D004756 ORTHO05D005793 4.5e-12 76.6 48 77.1
BolC2t10510H Brassica oleracea HOM05D052141 ORTHO05D107015 2.8e-06 57.4 40 67.5
Glyma.02G162651 Glycine max HOM05D005041 ORTHO05D006003 2.8e-06 57.4 37 64.9
Mapoly0025s0096 Marchantia polymorpha HOM05D003955 ORTHO05D004684 6.2e-06 56.2 153 26.8


User provided reference genes

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