Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10967 Brassica carinata HOM05D000271 ORTHO05D002798 9.3e-54 213.4 115 100.0
C04p22810 Brassica napus HOM05D000271 ORTHO05D002798 4.6e-37 157.9 86 98.8
C02p36400 Brassica napus HOM05D000271 ORTHO05D002798 6.7e-36 154.1 109 82.6
BraA06t26081Z Brassica rapa HOM05D000271 ORTHO05D002798 6.7e-36 154.1 109 82.6
BcaC03g15551 Brassica carinata HOM05D000271 ORTHO05D002798 8.7e-36 153.7 109 82.6
BolC2t09269H Brassica oleracea HOM05D000271 ORTHO05D002798 8.7e-36 153.7 109 82.6
BcaC01g02696 Brassica carinata HOM05D000271 ORTHO05D002798 1.5e-35 152.9 109 81.7
A06p31450 Brassica napus HOM05D000271 ORTHO05D002798 1.5e-35 152.9 109 81.7
C03p61530 Brassica napus HOM05D000271 ORTHO05D002798 1.5e-35 152.9 109 81.7
BolC3t18413H Brassica oleracea HOM05D000271 ORTHO05D002798 1.5e-35 152.9 109 81.7
BcaB02g09809 Brassica carinata HOM05D000271 ORTHO05D002798 5.6e-35 151.0 109 80.7
Sp2g27720 Schrenkiella parvula HOM05D000271 ORTHO05D002798 3.1e-33 145.2 109 78.9
Thhalv10004299m.g Eutrema salsugineum HOM05D000271 ORTHO05D002798 1.5e-32 142.9 109 78.9
CARHR278630 Cardamine hirsuta HOM05D000271 ORTHO05D002798 1.3e-31 139.8 109 76.1
Aa31LG1G17290 Aethionema arabicum HOM05D000271 ORTHO05D002798 1.4e-30 136.3 110 75.5
AL8G42070 Arabidopsis lyrata HOM05D000271 ORTHO05D002798 5.5e-30 134.4 109 73.4
AT5G64660 Arabidopsis thaliana HOM05D000271 ORTHO05D002798 1.2e-29 133.3 110 73.6
A10p01330 Brassica napus HOM05D000271 ORTHO05D002798 6.0e-29 131.0 80 90.0
C03p49440 Brassica napus HOM05D000271 ORTHO05D002798 6.0e-29 131.0 80 90.0
C02p46770 Brassica napus HOM05D000271 ORTHO05D002798 1.8e-28 129.4 80 88.8
BraA07t30495Z Brassica rapa HOM05D000271 ORTHO05D002798 1.8e-28 129.4 80 88.8
THA.LOC104799472 Tarenaya hassleriana HOM05D000271 ORTHO05D002798 1.1e-25 120.2 114 64.9
THA.LOC104818463 Tarenaya hassleriana HOM05D000271 ORTHO05D002798 8.4e-23 110.5 115 60.9
BcaC04g23301 Brassica carinata HOM05D000271 ORTHO05D002798 2.5e-22 109.0 100 70.0
AL6G20200 Arabidopsis lyrata HOM05D000271 ORTHO05D002798 4.2e-22 108.2 109 64.2
AT5G09800 Arabidopsis thaliana HOM05D000271 ORTHO05D002798 7.9e-21 104.0 109 62.4
Carub.0006s0821 Capsella rubella HOM05D000271 ORTHO05D002798 3.9e-20 101.7 110 63.6
BcaC01g03683 Brassica carinata HOM05D000271 ORTHO05D002798 1.5e-16 89.7 111 52.3
C03p49660 Brassica napus HOM05D000271 ORTHO05D002798 1.5e-16 89.7 111 52.3
BolC3t17263H Brassica oleracea HOM05D000271 ORTHO05D002798 1.5e-16 89.7 111 52.3
A03p40780 Brassica napus HOM05D000271 ORTHO05D002798 2.6e-16 89.0 111 50.5
BolC9t53901H Brassica oleracea HOM05D000271 ORTHO05D002798 2.6e-16 89.0 69 78.3
BraA03t13236Z Brassica rapa HOM05D000271 ORTHO05D002798 2.6e-16 89.0 111 50.5
C03p53330 Brassica napus HOM05D000271 ORTHO05D002798 3.4e-16 88.6 48 93.8
BraA05t21934Z Brassica rapa HOM05D000271 ORTHO05D002798 7.7e-16 87.4 110 48.2
A05p30920 Brassica napus HOM05D000271 ORTHO05D002798 1.3e-15 86.7 110 47.3
BcaB04g18999 Brassica carinata HOM05D000271 ORTHO05D002798 1.7e-15 86.3 111 49.5
C09p09940 Brassica napus HOM05D000271 ORTHO05D002798 2.9e-15 85.5 68 76.5
Sp3g16770 Schrenkiella parvula HOM05D000271 ORTHO05D002798 3.8e-15 85.1 111 47.7
BraA01t03657Z Brassica rapa HOM05D000271 ORTHO05D002798 6.5e-15 84.3 108 48.1
Carub.0003s1848 Capsella rubella HOM05D000271 ORTHO05D002798 8.5e-15 84.0 114 48.2
THA.LOC104821858 Tarenaya hassleriana HOM05D000271 ORTHO05D002798 8.5e-15 84.0 113 49.6
TPR.G37415 Trifolium pratense HOM05D000271 ORTHO05D002798 1.1e-14 83.6 109 47.7
Thhalv10020785m.g Eutrema salsugineum HOM05D000271 ORTHO05D002798 1.9e-14 82.8 111 47.7
BcaB04g20755 Brassica carinata HOM05D000271 ORTHO05D002798 2.5e-14 82.4 108 45.4
Glyma.05G189600 Glycine max HOM05D000271 ORTHO05D002798 2.5e-14 82.4 111 47.7
BcaB06g25921 Brassica carinata HOM05D000271 ORTHO05D002798 1.2e-13 80.1 110 48.2
BcaC09g48827 Brassica carinata HOM05D000271 ORTHO05D002798 1.2e-13 80.1 108 46.3
C01p45510 Brassica napus HOM05D000271 ORTHO05D002798 1.2e-13 80.1 108 46.3
CARHR094080 Cardamine hirsuta HOM05D000271 ORTHO05D002798 1.2e-13 80.1 111 48.6
Ca_17651_v3 Cicer arietinum L. HOM05D000271 ORTHO05D002798 1.2e-13 80.1 109 46.8
AT3G18710 Arabidopsis thaliana HOM05D000271 ORTHO05D002798 1.6e-13 79.7 111 45.9
A01p35780 Brassica napus HOM05D000271 ORTHO05D002798 1.6e-13 79.7 108 46.3
Cpa.g.sc42.110 Carica papaya HOM05D000271 ORTHO05D002798 1.6e-13 79.7 106 45.3
Atru.chr4.777 Acer truncatum HOM05D000271 ORTHO05D002798 2.1e-13 79.3 111 47.7
BcaC05g28581 Brassica carinata HOM05D000271 ORTHO05D002798 2.7e-13 79.0 110 47.3
C05p46840 Brassica napus HOM05D000271 ORTHO05D002798 2.7e-13 79.0 110 47.3
BolC5t33414H Brassica oleracea HOM05D000271 ORTHO05D002798 2.7e-13 79.0 110 47.3
Medtr8g092870 Medicago truncatula HOM05D000271 ORTHO05D002798 3.6e-13 78.6 109 46.8
Glyma.08G147200 Glycine max HOM05D000271 ORTHO05D002798 4.6e-13 78.2 111 46.8
Phvul.002G270300 Phaseolus vulgaris HOM05D000271 ORTHO05D002798 4.6e-13 78.2 109 47.7
CANSAT01G0085 Cannabis sativa HOM05D000271 ORTHO05D002798 7.9e-13 77.4 109 48.6
Potri.005G057500 Populus trichocarpa HOM05D000271 ORTHO05D002798 1.0e-12 77.0 113 44.2
Sabra05G0049400 Salix brachista HOM05D000271 ORTHO05D002798 1.0e-12 77.0 113 44.2
QL06p029766 Quercus lobata HOM05D000271 ORTHO05D002798 1.8e-12 76.3 110 42.7
Haze_25133 Corylus avellana HOM05D000271 ORTHO05D002798 2.3e-12 75.9 109 46.8
AL3G32040 Arabidopsis lyrata HOM05D000271 ORTHO05D002798 3.0e-12 75.5 90 51.1
Duzib147G0687 Durio zibethinus HOM05D000271 ORTHO05D002798 3.9e-12 75.1 105 49.5
Duzib187G1115 Durio zibethinus HOM05D000271 ORTHO05D002798 3.9e-12 75.1 105 48.6
Potri.007G110600 Populus trichocarpa HOM05D000271 ORTHO05D002798 3.9e-12 75.1 109 45.0
TPR.G24056 Trifolium pratense HOM05D000271 ORTHO05D002798 3.9e-12 75.1 111 44.1
VMungo0251G2475 Vigna mungo HOM05D000271 ORTHO05D002798 3.9e-12 75.1 109 47.7
ClCG01G015580 Citrullus lanatus HOM05D000271 ORTHO05D002798 5.1e-12 74.7 112 44.6
MELO3C008040.2 Cucumis melo HOM05D000271 ORTHO05D002798 5.1e-12 74.7 112 44.6
Aa31LG8G5530 Aethionema arabicum HOM05D000271 ORTHO05D002798 6.7e-12 74.3 114 45.6
CiPaw.04G085900 Carya illinoinensis HOM05D000271 ORTHO05D002798 6.7e-12 74.3 109 45.9
COL.COLO4_14001 Corchorus olitorius HOM05D000271 ORTHO05D002798 6.7e-12 74.3 105 49.5
Duzib264G1027 Durio zibethinus HOM05D000271 ORTHO05D002798 6.7e-12 74.3 105 48.6
FvH4_1g24000 Fragaria vesca HOM05D000271 ORTHO05D002798 6.7e-12 74.3 116 41.4
CiPaw.03G127800 Carya illinoinensis HOM05D000271 ORTHO05D002798 8.8e-12 73.9 109 45.9
Psat7g046840 Pisum sativum HOM05D000271 ORTHO05D002798 8.8e-12 73.9 109 45.9
Lalb_Chr07g0184501 Lupinus albus HOM05D000271 ORTHO05D002798 1.1e-11 73.6 109 44.0
CsaV3_6G041810 Cucumis sativus L. HOM05D000271 ORTHO05D002798 1.5e-11 73.2 112 44.6
Sabra07G0090500 Salix brachista HOM05D000271 ORTHO05D002798 1.5e-11 73.2 109 44.0
Ca_16924_v3 Cicer arietinum L. HOM05D000271 ORTHO05D002798 2.0e-11 72.8 109 45.0
Manes.13G071800 Manihot esculenta HOM05D000271 ORTHO05D002798 2.0e-11 72.8 111 44.1
Cfa002836 Carpinus fangiana HOM05D000271 ORTHO05D002798 2.5e-11 72.4 109 45.0
Prupe.6G159600 Prunus persica HOM05D000271 ORTHO05D002798 2.5e-11 72.4 111 44.1
TWI75G0086 Tripterygium wilfordii HOM05D000271 ORTHO05D002798 2.5e-11 72.4 109 45.0
ClCG02G000630 Citrullus lanatus HOM05D000271 ORTHO05D002798 3.3e-11 72.0 109 47.7
FAN23G0093 Fragaria x ananassa HOM05D000271 ORTHO05D002798 3.3e-11 72.0 116 40.5
FAN26G2567 Fragaria x ananassa HOM05D000271 ORTHO05D002798 3.3e-11 72.0 116 40.5
MD01G1010900 Malus domestica HOM05D000271 ORTHO05D002798 3.3e-11 72.0 109 44.0
Thecc.01G124800 Theobroma cacao HOM05D000271 ORTHO05D002798 3.3e-11 72.0 105 46.7
Lj4g0017524 Lotus japonicus HOM05D000271 ORTHO05D002798 4.3e-11 71.6 109 45.9
Glyma.06G151200 Glycine max HOM05D000271 ORTHO05D002798 5.7e-11 71.2 110 42.7
FAN19G1521 Fragaria x ananassa HOM05D000271 ORTHO05D002798 7.4e-11 70.9 116 39.7
TWI79G1625 Tripterygium wilfordii HOM05D000271 ORTHO05D002798 7.4e-11 70.9 113 42.5
Dinv11330 Davidia involucrata HOM05D000271 ORTHO05D002798 9.7e-11 70.5 109 44.0
Manes.12G152200 Manihot esculenta HOM05D000271 ORTHO05D002798 1.3e-10 70.1 111 45.0
FAN28G1821 Fragaria x ananassa HOM05D000271 ORTHO05D002798 1.7e-10 69.7 116 39.7
Gohir.A01G128175 Gossypium hirsutum HOM05D000271 ORTHO05D002798 1.7e-10 69.7 111 45.9
Gohir.A11G225800 Gossypium hirsutum HOM05D000271 ORTHO05D002798 1.7e-10 69.7 111 45.9
Gohir.D11G234400 Gossypium hirsutum HOM05D000271 ORTHO05D002798 1.7e-10 69.7 111 45.9
Gorai.007G246700 Gossypium raimondii HOM05D000271 ORTHO05D002798 1.7e-10 69.7 111 45.9
THA.LOC104820423 Tarenaya hassleriana HOM05D000271 ORTHO05D002798 1.7e-10 69.7 84 52.4
CSS0011867 Camellia sinensis var. sinensis HOM05D000271 ORTHO05D002798 2.2e-10 69.3 111 43.2
CSS0015766 Camellia sinensis var. sinensis HOM05D000271 ORTHO05D002798 2.2e-10 69.3 111 43.2
Ciclev10025637m.g Citrus clementina HOM05D000271 ORTHO05D002798 2.2e-10 69.3 131 40.5
Lalb_Chr12g0203261 Lupinus albus HOM05D000271 ORTHO05D002798 2.2e-10 69.3 109 44.0
Psat5g063520 Pisum sativum HOM05D000271 ORTHO05D002798 2.8e-10 68.9 109 42.2
RcHm_v2.0_Chr2g0120131 Rosa chinensis HOM05D000271 ORTHO05D002798 2.8e-10 68.9 116 39.7
Actinidia09826 Actinidia chinensis HOM05D000271 ORTHO05D002798 3.7e-10 68.6 109 45.0
Dinv24314 Davidia involucrata HOM05D000271 ORTHO05D002798 3.7e-10 68.6 109 43.1
VMungo1309G2205 Vigna mungo HOM05D000271 ORTHO05D002798 3.7e-10 68.6 109 42.2
Cc07_g17800 Coffea canephora HOM05D000271 ORTHO05D002798 4.8e-10 68.2 109 42.2
Eucgr.I00230 Eucalyptus grandis HOM05D000271 ORTHO05D002798 4.8e-10 68.2 103 44.7
Phvul.009G148200 Phaseolus vulgaris HOM05D000271 ORTHO05D002798 4.8e-10 68.2 109 42.2
Rhsim10G0138500 Rhododendron simsii HOM05D000271 ORTHO05D002798 4.8e-10 68.2 106 43.4
A03p07860 Brassica napus HOM05D000271 ORTHO05D002798 8.2e-10 67.4 48 83.3
Gohir.A11G055900 Gossypium hirsutum HOM05D000271 ORTHO05D002798 1.1e-09 67.0 106 47.2
Medtr3g095730 Medicago truncatula HOM05D000271 ORTHO05D002798 1.1e-09 67.0 109 42.2
Gohir.D11G060000 Gossypium hirsutum HOM05D000271 ORTHO05D002798 1.4e-09 66.6 106 47.2
GSVIVG01026542001 Vitis vinifera HOM05D000271 ORTHO05D002798 1.4e-09 66.6 79 48.1
TAR579G0005 Trochodendron aralioides HOM05D000271 ORTHO05D002798 1.8e-09 66.2 107 42.1
Gorai.007G064700 Gossypium raimondii HOM05D000271 ORTHO05D002798 2.4e-09 65.9 106 45.3
PGR102G1022 Punica granatum HOM05D000271 ORTHO05D002798 3.1e-09 65.5 111 42.3
TAR376G0047 Trochodendron aralioides HOM05D000271 ORTHO05D002798 4.1e-09 65.1 111 39.6
CsaV3_2G018140 Cucumis sativus L. HOM05D000271 ORTHO05D002798 6.9e-09 64.3 109 44.0
TAR628G1731 Trochodendron aralioides HOM05D000271 ORTHO05D002798 6.9e-09 64.3 111 39.6
Migut.H00758 Erythranthe guttata HOM05D000271 ORTHO05D002798 1.2e-08 63.5 80 48.8
MSTRG.1082 Avicennia marina HOM05D000271 ORTHO05D002798 1.5e-08 63.2 111 39.6
HanXRQChr05g0161711 Helianthus annuus HOM05D000271 ORTHO05D002798 1.5e-08 63.2 109 40.4
Sed0008178 Sechium edule HOM05D000271 ORTHO05D002798 1.5e-08 63.2 111 41.4
Solyc04g071030.1 Solanum lycopersicum HOM05D000271 ORTHO05D002798 1.5e-08 63.2 111 40.5
Sopen04g026970 Solanum pennellii HOM05D000271 ORTHO05D002798 1.5e-08 63.2 111 40.5
PGSC0003DMG400000791 Solanum tuberosum HOM05D000271 ORTHO05D002798 1.5e-08 63.2 111 39.6
Lj4A851T41 Lonicera japonica HOM05D000271 ORTHO05D002798 2.0e-08 62.8 105 40.0
Nitab4.5_0002909g0060 Nicotiana tabacum HOM05D000271 ORTHO05D002798 2.0e-08 62.8 111 35.1
Nitab4.5_0004019g0010 Nicotiana tabacum HOM05D000271 ORTHO05D002798 3.4e-08 62.0 109 41.3
Oeu037793.1 Olea europaea HOM05D000271 ORTHO05D002798 3.4e-08 62.0 106 40.6
Solyc11g005700.1 Solanum lycopersicum HOM05D000271 ORTHO05D002798 3.4e-08 62.0 107 38.3
Aqoxy5G02157 Aquilegia oxysepala HOM05D000271 ORTHO05D002798 4.5e-08 61.6 103 40.8
Sopen11g001660 Solanum pennellii HOM05D000271 ORTHO05D002798 4.5e-08 61.6 107 38.3
Nitab4.5_0011504g0010 Nicotiana tabacum HOM05D000271 ORTHO05D002798 7.7e-08 60.8 111 35.1
Dinv25838 Davidia involucrata HOM05D000271 ORTHO05D002798 1.0e-07 60.5 111 37.8
RcHm_v2.0_Chr6g0276541 Rosa chinensis HOM05D000271 ORTHO05D002798 1.0e-07 60.5 111 38.7
Oeu047675.1 Olea europaea HOM05D000271 ORTHO05D002798 1.3e-07 60.1 109 38.5
PGR119G0594 Punica granatum HOM05D000271 ORTHO05D002798 1.3e-07 60.1 106 38.7
PGSC0003DMG400025560 Solanum tuberosum HOM05D000271 ORTHO05D002798 1.3e-07 60.1 107 37.4
Peaxi162Scf00012g00231 Petunia axillaris HOM05D000271 ORTHO05D002798 1.7e-07 59.7 106 35.8
Gohir.D10G105900 Gossypium hirsutum HOM05D000271 ORTHO05D002798 2.2e-07 59.3 106 41.5
Gorai.011G115700 Gossypium raimondii HOM05D000271 ORTHO05D002798 2.2e-07 59.3 106 41.5
BcaNung06139 Brassica carinata HOM05D000271 ORTHO05D002798 2.9e-07 58.9 110 40.9
CDE06G1476 Ceratophyllum demersum HOM05D000271 ORTHO05D002798 2.9e-07 58.9 111 37.8
CDE08G1562 Ceratophyllum demersum HOM05D000271 ORTHO05D002798 2.9e-07 58.9 111 36.9
MBI05_g07869_MAGBIO Magnolia biondii HOM05D000271 ORTHO05D002798 2.9e-07 58.9 111 37.8
HPP92_009306 Vanilla planifolia HOM05D000271 ORTHO05D002798 3.8e-07 58.5 105 37.1
Actinidia06644 Actinidia chinensis HOM05D000271 ORTHO05D002798 5.0e-07 58.2 80 45.0
Actinidia15149 Actinidia chinensis HOM05D000271 ORTHO05D002798 5.0e-07 58.2 111 36.0
Sabra05G0145000 Salix brachista HOM05D000271 ORTHO05D002798 5.0e-07 58.2 111 36.0
MSTRG.23433 Avicennia marina HOM05D000271 ORTHO05D002798 6.5e-07 57.8 106 36.8
Hma1.2p1_0483F.1_g162770 Hydrangea macrophylla HOM05D000271 ORTHO05D002798 1.1e-06 57.0 110 38.2
Lj7C368T1 Lonicera japonica HOM05D000271 ORTHO05D002798 1.9e-06 56.2 104 37.5
Nitab4.5_0012312g0010 Nicotiana tabacum HOM05D000271 ORTHO05D002798 1.9e-06 56.2 111 36.0
Peaxi162Scf00263g00104 Petunia axillaris HOM05D000271 ORTHO05D002798 1.9e-06 56.2 111 36.0
DCAR_001354 Daucus carota HOM05D000271 ORTHO05D002798 2.5e-06 55.8 111 36.9
Dinv41104 Davidia involucrata HOM05D000271 ORTHO05D002798 2.5e-06 55.8 110 37.3
HPP92_026216 Vanilla planifolia HOM05D000271 ORTHO05D002798 3.2e-06 55.5 102 36.3
Gorai.005G080600 Gossypium raimondii HOM05D000271 ORTHO05D002798 4.2e-06 55.1 100 42.0
MD05G1020500 Malus domestica HOM05D000271 ORTHO05D002798 4.2e-06 55.1 113 35.4
HPP92_016161 Vanilla planifolia HOM05D000271 ORTHO05D002798 4.2e-06 55.1 102 36.3
Cc10_g14120 Coffea canephora HOM05D000271 ORTHO05D002798 5.5e-06 54.7 111 36.0
Gohir.A02G065600 Gossypium hirsutum HOM05D000271 ORTHO05D002798 5.5e-06 54.7 80 46.2
Gohir.D02G071400 Gossypium hirsutum HOM05D000271 ORTHO05D002798 5.5e-06 54.7 100 42.0
Gorai.005G080700 Gossypium raimondii HOM05D000271 ORTHO05D002798 5.5e-06 54.7 100 42.0
Potri.005G189800 Populus trichocarpa HOM05D000271 ORTHO05D002798 5.5e-06 54.7 111 33.3
CSS0036300 Camellia sinensis var. sinensis HOM05D000271 ORTHO05D002798 7.2e-06 54.3 111 36.0
Migut.C00993 Erythranthe guttata HOM05D000271 ORTHO05D002798 7.2e-06 54.3 111 36.0
FAN20G3108 Fragaria x ananassa HOM05D000271 ORTHO05D002798 7.2e-06 54.3 113 36.3
CANSAT25G3900 Cannabis sativa HOM05D000271 ORTHO05D002798 9.4e-06 53.9 109 37.6
Duzib093G0785 Durio zibethinus HOM05D000271 ORTHO05D002798 9.4e-06 53.9 80 47.5
FvH4_2g14260 Fragaria vesca HOM05D000271 ORTHO05D002798 9.4e-06 53.9 111 36.9
FAN15G0979 Fragaria x ananassa HOM05D000271 ORTHO05D002798 9.4e-06 53.9 113 36.3
FAN24G2485 Fragaria x ananassa HOM05D000271 ORTHO05D002798 9.4e-06 53.9 111 36.9
Gohir.D02G071500 Gossypium hirsutum HOM05D000271 ORTHO05D002798 9.4e-06 53.9 100 42.0


User provided reference genes

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