Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10761 Brassica carinata HOM05D006705 ORTHO05D008179 3.2e-165 586.3 304 100.0
C04p25410 Brassica napus HOM05D006705 ORTHO05D008179 3.2e-165 586.3 304 100.0
BolC4t24049H Brassica oleracea HOM05D006705 ORTHO05D008179 3.2e-165 586.3 304 100.0
A03p65890 Brassica napus HOM05D006705 ORTHO05D008179 4.6e-156 555.8 307 96.1
BraA03t15643Z Brassica rapa HOM05D006705 ORTHO05D008179 4.6e-156 555.8 307 96.1
Sp7g08260 Schrenkiella parvula HOM05D006705 ORTHO05D008179 3.9e-139 499.6 310 86.5
BcaC06g31759 Brassica carinata HOM05D006705 ORTHO05D008179 1.8e-136 490.7 306 86.6
Thhalv10027665m.g Eutrema salsugineum HOM05D006705 ORTHO05D008179 6.9e-136 488.8 308 86.0
AT5G42310 Arabidopsis thaliana HOM05D006705 ORTHO05D008179 3.2e-125 453.4 310 78.7
Aa31LG9G12430 Aethionema arabicum HOM05D006705 ORTHO05D008179 2.2e-121 440.7 320 76.6
AL8G19290 Arabidopsis lyrata HOM05D006705 ORTHO05D008179 5.3e-120 436.0 314 76.1
CARHR284920 Cardamine hirsuta HOM05D006705 ORTHO05D008179 4.5e-119 433.0 307 74.9
Carub.0008s0687 Capsella rubella HOM05D006705 ORTHO05D008179 1.7e-118 431.0 311 75.9
THA.LOC104825423 Tarenaya hassleriana HOM05D006705 ORTHO05D008179 9.5e-109 398.7 317 69.1
Cpa.g.sc26.199 Carica papaya HOM05D006705 ORTHO05D008179 7.3e-101 372.5 310 66.5
QL02p014030 Quercus lobata HOM05D006705 ORTHO05D008179 6.6e-94 349.4 313 62.9
Haze_22772 Corylus avellana HOM05D006705 ORTHO05D008179 1.5e-93 348.2 313 62.6
Cfa014075 Carpinus fangiana HOM05D006705 ORTHO05D008179 5.6e-93 346.3 310 61.9
ClCG08G009460 Citrullus lanatus HOM05D006705 ORTHO05D008179 3.6e-92 343.6 323 58.8
CsaV3_6G031600 Cucumis sativus L. HOM05D006705 ORTHO05D008179 3.6e-92 343.6 328 60.4
Dinv05535 Davidia involucrata HOM05D006705 ORTHO05D008179 6.2e-92 342.8 306 62.7
Sabra05G0193800 Salix brachista HOM05D006705 ORTHO05D008179 8.0e-92 342.4 314 61.1
MELO3C026541.2 Cucumis melo HOM05D006705 ORTHO05D008179 8.9e-91 339.0 327 58.1
Manes.05G134500 Manihot esculenta HOM05D006705 ORTHO05D008179 5.8e-90 336.3 271 66.1
COL.COLO4_06661 Corchorus olitorius HOM05D006705 ORTHO05D008179 7.5e-90 335.9 316 61.1
FAN27G0286 Fragaria x ananassa HOM05D006705 ORTHO05D008179 1.3e-89 335.1 313 60.4
Thecc.08G058800 Theobroma cacao HOM05D006705 ORTHO05D008179 2.9e-89 334.0 240 72.1
Atru.chr13.134 Acer truncatum HOM05D006705 ORTHO05D008179 3.7e-89 333.6 249 69.1
GSVIVG01013362001 Vitis vinifera HOM05D006705 ORTHO05D008179 4.9e-89 333.2 309 60.8
FvH4_2g37460 Fragaria vesca HOM05D006705 ORTHO05D008179 6.4e-89 332.8 313 60.4
CiPaw.08G072900 Carya illinoinensis HOM05D006705 ORTHO05D008179 8.3e-89 332.4 311 61.1
Gohir.A01G105700 Gossypium hirsutum HOM05D006705 ORTHO05D008179 1.9e-88 331.3 240 70.8
Nn5g30939 Nelumbo nucifera HOM05D006705 ORTHO05D008179 1.9e-88 331.3 305 60.3
FAN15G2229 Fragaria x ananassa HOM05D006705 ORTHO05D008179 2.4e-88 330.9 314 60.5
Actinidia15490 Actinidia chinensis HOM05D006705 ORTHO05D008179 3.2e-88 330.5 306 59.5
Gorai.002G117100 Gossypium raimondii HOM05D006705 ORTHO05D008179 1.6e-87 328.2 311 59.2
Gohir.D01G092000 Gossypium hirsutum HOM05D006705 ORTHO05D008179 2.0e-87 327.8 310 59.0
Sed0011006 Sechium edule HOM05D006705 ORTHO05D008179 2.0e-87 327.8 304 58.9
Potri.005G250200 Populus trichocarpa HOM05D006705 ORTHO05D008179 3.5e-87 327.0 318 58.2
CANSAT25G1831 Cannabis sativa HOM05D006705 ORTHO05D008179 1.7e-86 324.7 304 58.9
Glyma.06G018300 Glycine max HOM05D006705 ORTHO05D008179 3.0e-86 323.9 246 67.5
RcHm_v2.0_Chr6g0304261 Rosa chinensis HOM05D006705 ORTHO05D008179 3.9e-86 323.6 311 59.5
CSS0004504 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 5.0e-86 323.2 304 59.5
CSS0019684 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 5.0e-86 323.2 304 59.5
arahy.Tifrunner.gnm1.ann1.A2XG10 Arachis hypogaea HOM05D006705 ORTHO05D008179 6.6e-86 322.8 243 66.7
Ciclev10000451m.g Citrus clementina HOM05D006705 ORTHO05D008179 6.6e-86 322.8 314 58.6
Phvul.009G010700 Phaseolus vulgaris HOM05D006705 ORTHO05D008179 8.6e-86 322.4 311 56.9
Prupe.1G354600 Prunus persica HOM05D006705 ORTHO05D008179 1.9e-85 321.2 234 70.5
Nitab4.5_0000337g0230 Nicotiana tabacum HOM05D006705 ORTHO05D008179 4.3e-85 320.1 304 58.2
arahy.Tifrunner.gnm1.ann1.1DQJ64 Arachis hypogaea HOM05D006705 ORTHO05D008179 5.6e-85 319.7 243 66.3
Nitab4.5_0025577g0010 Nicotiana tabacum HOM05D006705 ORTHO05D008179 4.7e-84 316.6 304 57.9
TAR376G0550 Trochodendron aralioides HOM05D006705 ORTHO05D008179 8.1e-84 315.8 249 65.1
VMungo1309G2580 Vigna mungo HOM05D006705 ORTHO05D008179 8.1e-84 315.8 303 57.4
Aqoxy5G01043 Aquilegia oxysepala HOM05D006705 ORTHO05D008179 1.1e-83 315.5 314 56.4
Glyma.04G018000 Glycine max HOM05D006705 ORTHO05D008179 1.1e-83 315.5 249 66.3
Potri.002G010900 Populus trichocarpa HOM05D006705 ORTHO05D008179 1.8e-83 314.7 319 55.5
Lalb_Chr11g0061641 Lupinus albus HOM05D006705 ORTHO05D008179 3.1e-83 313.9 234 68.8
MD12G1003200 Malus domestica HOM05D006705 ORTHO05D008179 4.0e-83 313.5 249 65.9
Hund05113 Selenicereus undatus HOM05D006705 ORTHO05D008179 4.0e-83 313.5 298 57.0
Medtr3g115270 Medicago truncatula HOM05D006705 ORTHO05D008179 1.2e-82 312.0 311 56.9
CAN.G985.2 Capsicum annuum HOM05D006705 ORTHO05D008179 3.4e-82 310.5 309 56.6
Hma1.2p1_0507F.1_g168450 Hydrangea macrophylla HOM05D006705 ORTHO05D008179 5.8e-82 309.7 242 64.9
Ca_15434_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 1.7e-81 308.1 246 63.4
Ca_15459_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 1.7e-81 308.1 246 63.4
Rhsim06G0007500 Rhododendron simsii HOM05D006705 ORTHO05D008179 1.7e-81 308.1 310 56.1
Lsat_1_v5_gn_9_45140 Lactuca sativa HOM05D006705 ORTHO05D008179 1.1e-80 305.4 313 56.5
Psat5g159080 Pisum sativum HOM05D006705 ORTHO05D008179 1.1e-80 305.4 311 55.3
PGSC0003DMG400011663 Solanum tuberosum HOM05D006705 ORTHO05D008179 1.4e-80 305.1 264 62.1
MD15G1002100 Malus domestica HOM05D006705 ORTHO05D008179 2.4e-80 304.3 234 67.1
PSO170G2138 Papaver somniferum HOM05D006705 ORTHO05D008179 2.4e-80 304.3 244 62.7
PSO210G3824 Papaver somniferum HOM05D006705 ORTHO05D008179 5.4e-80 303.1 244 61.9
Lj1g0004605 Lotus japonicus HOM05D006705 ORTHO05D008179 9.2e-80 302.4 303 56.1
vmacro21812 Vaccinium macrocarpon HOM05D006705 ORTHO05D008179 9.2e-80 302.4 308 54.9
DCAR_013913 Daucus carota HOM05D006705 ORTHO05D008179 1.6e-79 301.6 306 55.2
Cc10_g00680 Coffea canephora HOM05D006705 ORTHO05D008179 2.1e-79 301.2 308 54.9
Peaxi162Scf00400g00113 Petunia axillaris HOM05D006705 ORTHO05D008179 2.1e-79 301.2 305 56.4
AUR62036875 Chenopodium quinoa HOM05D006705 ORTHO05D008179 7.8e-79 299.3 266 61.3
AUR62043173 Chenopodium quinoa HOM05D006705 ORTHO05D008179 7.8e-79 299.3 307 55.4
TPR.G38137 Trifolium pratense HOM05D006705 ORTHO05D008179 3.9e-78 297.0 242 62.8
Migut.C00960 Erythranthe guttata HOM05D006705 ORTHO05D008179 2.5e-77 294.3 252 61.9
EL10Ac1g01967 Beta vulgaris HOM05D006705 ORTHO05D008179 7.3e-77 292.7 278 58.3
Sabra02G0008200 Salix brachista HOM05D006705 ORTHO05D008179 2.8e-76 290.8 323 52.3
HanXRQChr05g0146791 Helianthus annuus HOM05D006705 ORTHO05D008179 3.6e-76 290.4 245 62.9
Oeu007482.1 Olea europaea HOM05D006705 ORTHO05D008179 6.2e-76 289.7 247 59.5
Solyc08g045850.3 Solanum lycopersicum HOM05D006705 ORTHO05D008179 6.2e-76 289.7 266 59.4
MSTRG.1107 Avicennia marina HOM05D006705 ORTHO05D008179 8.1e-76 289.3 310 53.2
Sopen08g014170 Solanum pennellii HOM05D006705 ORTHO05D008179 1.1e-75 288.9 267 59.2
Lsat_1_v5_gn_8_26180 Lactuca sativa HOM05D006705 ORTHO05D008179 6.8e-75 286.2 285 56.8
SGA_v2.0_scaffold108G30860 Striga asiatica HOM05D006705 ORTHO05D008179 8.9e-75 285.8 305 52.8
CDE02G1751 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 1.2e-74 285.4 205 68.3
PGR031G2749 Punica granatum HOM05D006705 ORTHO05D008179 1.2e-74 285.4 316 54.4
SalBow7G0522 Salvia bowleyana HOM05D006705 ORTHO05D008179 2.2e-73 281.2 250 58.4
Ah.11g041180 Amaranthus hybridus HOM05D006705 ORTHO05D008179 1.3e-70 271.9 268 57.1
Sc15g0004450 Simmondsia chinensis HOM05D006705 ORTHO05D008179 1.7e-70 271.6 303 51.2
CDE04G2934 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 3.0e-70 270.8 276 56.9
ECA232G0132 Erigeron canadensis HOM05D006705 ORTHO05D008179 8.6e-70 269.2 277 54.2
HanXRQChr12g0367581 Helianthus annuus HOM05D006705 ORTHO05D008179 1.2e-68 265.4 285 52.6
ECA233G5787 Erigeron canadensis HOM05D006705 ORTHO05D008179 1.2e-66 258.8 290 50.3
Lj4A11G70 Lonicera japonica HOM05D006705 ORTHO05D008179 6.2e-60 236.5 156 76.9
Eucgr.F03553 Eucalyptus grandis HOM05D006705 ORTHO05D008179 1.3e-54 218.8 163 71.8
MBI08_g41522_MAGBIO Magnolia biondii HOM05D006705 ORTHO05D008179 1.3e-49 202.2 241 50.2
FAN20G2687 Fragaria x ananassa HOM05D000148 ORTHO05D008179 6.0e-47 193.4 151 63.6
HPP92_000875 Vanilla planifolia HOM05D006705 ORTHO05D008179 2.6e-42 177.9 244 43.9
ATR0661G389 Amborella trichopoda HOM05D006705 ORTHO05D008179 7.4e-37 159.8 199 46.2
SEGI_04333 Sequoiadendron giganteum HOM05D006705 ORTHO05D000002 3.6e-31 141.0 183 44.8
Mapoly0048s0090 Marchantia polymorpha HOM05D006705 ORTHO05D008179 1.2e-23 115.9 225 34.7
AagrBONN_evm.TU.Sc2ySwM_362.1316 Anthoceros agrestis HOM05D006705 ORTHO05D008179 1.6e-23 115.5 182 35.2
Zm00001eb323580 Zea mays HOM05D006705 ORTHO05D008179 7.9e-23 113.2 239 35.1
Os07g0548300 Oryza sativa ssp. japonica HOM05D006705 ORTHO05D008179 2.4e-19 101.7 290 32.1
SMO180G0012 Selaginella moellendorffii HOM05D006705 ORTHO05D008179 2.4e-19 101.7 172 34.9
Eucgr.F03554 Eucalyptus grandis HOM05D006705 ORTHO05D008179 3.1e-11 74.7 41 85.4
BcaNung05253 Brassica carinata HOM05D006705 ORTHO05D008179 4.5e-10 70.9 43 83.7
FvH4_5g30181 Fragaria vesca HOM05D006705 ORTHO05D008179 1.0e-09 69.7 59 59.3
Gohir.D06G036701 Gossypium hirsutum HOM05D006705 ORTHO05D008179 1.3e-09 69.3 41 75.6
Gorai.010G041000 Gossypium raimondii HOM05D006705 ORTHO05D008179 1.3e-09 69.3 41 75.6
Nitab4.5_0002710g0130 Nicotiana tabacum HOM05D006705 ORTHO05D008179 1.3e-09 69.3 40 75.0
CDE02G4098 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 8.5e-09 66.6 39 76.9
Gohir.D05G336850 Gossypium hirsutum HOM05D006705 ORTHO05D008179 2.1e-07 62.0 37 75.7
Nn6g35263 Nelumbo nucifera HOM05D000001 ORTHO05D000003 1.8e-06 58.9 181 28.7
Pp3c11_21930 Physcomitrium patens HOM05D006705 ORTHO05D008179 3.0e-06 58.2 202 24.8
AUR62037373 Chenopodium quinoa HOM05D002479 ORTHO05D002675 4.0e-06 57.8 104 30.8
Gohir.D06G157800 Gossypium hirsutum HOM05D000485 ORTHO05D000341 6.7e-06 57.0 37 70.3


User provided reference genes

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