Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10690 Brassica carinata HOM05D004873 ORTHO05D006122 0.0e+00 1494.9 918 100.0
C04p26690 Brassica napus HOM05D004873 ORTHO05D006122 0.0e+00 1392.1 918 95.6
BolC4t24137H Brassica oleracea HOM05D004873 ORTHO05D006122 0.0e+00 1392.1 918 95.6
BcaC06g31808 Brassica carinata HOM05D004873 ORTHO05D006122 1.9e-311 1072.4 924 78.0
C01p36930 Brassica napus HOM05D004873 ORTHO05D006122 2.2e-307 1058.9 930 75.5
BolC1t03651H Brassica oleracea HOM05D004873 ORTHO05D006122 6.4e-307 1057.4 930 77.5
BcaC09g49418 Brassica carinata HOM05D004873 ORTHO05D006122 2.3e-304 1048.9 930 76.8
BraA01t02979Z Brassica rapa HOM05D004873 ORTHO05D006122 1.3e-302 1043.1 932 77.0
A01p29150 Brassica napus HOM05D004873 ORTHO05D006122 6.9e-301 1037.3 932 76.7
Sp2g04470 Schrenkiella parvula HOM05D004873 ORTHO05D006122 2.1e-289 999.2 950 72.3
BcaB04g20256 Brassica carinata HOM05D004873 ORTHO05D006122 2.8e-286 988.8 933 75.6
AL2G16455 Arabidopsis lyrata HOM05D004873 ORTHO05D006122 3.3e-263 912.1 951 66.7
Thhalv10023242m.g Eutrema salsugineum HOM05D004873 ORTHO05D006122 4.1e-261 905.2 963 68.4
Carub.0002s0504 Capsella rubella HOM05D004873 ORTHO05D006122 2.3e-256 889.4 959 65.5
CARHR052750 Cardamine hirsuta HOM05D004873 ORTHO05D006122 7.2e-234 814.7 773 72.4
C05p51270 Brassica napus HOM05D004873 ORTHO05D006122 5.6e-226 788.5 560 95.7
Aa31LG2G10110 Aethionema arabicum HOM05D004873 ORTHO05D006122 1.1e-221 774.2 975 60.8
AT1G60200 Arabidopsis thaliana HOM05D004873 ORTHO05D006122 2.0e-220 770.0 749 71.4
THA.LOC104819514 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 6.0e-180 635.6 987 53.4
THA.LOC104819547 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 1.1e-165 588.2 888 53.6
Duzib251G0436 Durio zibethinus HOM05D004873 ORTHO05D006122 2.6e-159 567.0 980 47.8
Atru.chr11.2013 Acer truncatum HOM05D004873 ORTHO05D006122 5.0e-158 562.8 991 50.1
Duzib248G0479 Durio zibethinus HOM05D004873 ORTHO05D006122 1.5e-151 541.2 929 50.7
RcHm_v2.0_Chr4g0443951 Rosa chinensis HOM05D004873 ORTHO05D006122 1.3e-150 538.1 921 51.1
COL.COLO4_36971 Corchorus olitorius HOM05D004873 ORTHO05D006122 1.5e-146 524.6 885 44.6
Haze_12170 Corylus avellana HOM05D004873 ORTHO05D006122 4.1e-144 516.5 946 48.0
GSVIVG01020233001 Vitis vinifera HOM05D004873 ORTHO05D006122 4.1e-144 516.5 857 52.2
Gorai.005G183000 Gossypium raimondii HOM05D004873 ORTHO05D006122 2.6e-143 513.8 785 58.5
Ciclev10030647m.g Citrus clementina HOM05D004873 ORTHO05D006122 4.5e-143 513.1 974 47.4
TWI18G0605 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 1.0e-142 511.9 984 47.6
FAN12G3868 Fragaria x ananassa HOM05D004873 ORTHO05D006122 2.2e-142 510.8 964 49.6
FAN22G1569 Fragaria x ananassa HOM05D004873 ORTHO05D006122 2.2e-142 510.8 966 49.6
Gohir.D02G163000 Gossypium hirsutum HOM05D004873 ORTHO05D006122 2.9e-142 510.4 785 58.2
FvH4_4g34571 Fragaria vesca HOM05D004873 ORTHO05D006122 4.2e-141 506.5 968 49.6
Sabra10G0067000 Salix brachista HOM05D004873 ORTHO05D006122 1.0e-139 501.9 1002 49.5
QL03p061438 Quercus lobata HOM05D004873 ORTHO05D006122 4.0e-139 500.0 787 54.8
TWI36G0907 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 9.7e-138 495.4 918 50.2
TWI75G0297 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 9.7e-138 495.4 986 49.0
FAN07G2437 Fragaria x ananassa HOM05D004873 ORTHO05D006122 8.2e-137 492.3 765 56.1
FAN17G2310 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.1e-136 491.9 959 49.6
Oeu055452.2 Olea europaea HOM05D004873 ORTHO05D006122 1.4e-136 491.5 983 44.9
Manes.13G031000 Manihot esculenta HOM05D004873 ORTHO05D006122 4.1e-136 490.0 771 52.7
Potri.008G147100 Populus trichocarpa HOM05D004873 ORTHO05D006122 4.1e-136 490.0 808 50.1
Medtr5g034430 Medicago truncatula HOM05D004873 ORTHO05D006122 5.3e-136 489.6 988 47.1
Gohir.A03G140300 Gossypium hirsutum HOM05D004873 ORTHO05D006122 4.5e-135 486.5 774 57.5
Glyma.01G031400 Glycine max HOM05D004873 ORTHO05D006122 1.3e-134 485.0 973 48.3
Cfa009139 Carpinus fangiana HOM05D004873 ORTHO05D006122 1.6e-132 478.0 971 45.5
Dinv24864 Davidia involucrata HOM05D004873 ORTHO05D006122 1.6e-132 478.0 801 46.8
VMungo1215G2983 Vigna mungo HOM05D004873 ORTHO05D006122 2.1e-132 477.6 984 47.7
CiPaw.05G150500 Carya illinoinensis HOM05D004873 ORTHO05D006122 1.4e-131 474.9 979 47.1
Hma1.2p1_0160F.1_g070740 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 2.3e-131 474.2 918 47.4
arahy.Tifrunner.gnm1.ann1.SJZ9IC Arachis hypogaea HOM05D004873 ORTHO05D006122 3.0e-131 473.8 988 46.9
Phvul.002G071900 Phaseolus vulgaris HOM05D004873 ORTHO05D006122 1.5e-130 471.5 778 53.3
Ca_04600_v3 Cicer arietinum L. HOM05D004873 ORTHO05D006122 3.4e-130 470.3 938 43.8
MBI15_g36943_MAGBIO Magnolia biondii HOM05D004873 ORTHO05D006122 5.7e-130 469.5 937 47.6
DCAR_024143 Daucus carota HOM05D004873 ORTHO05D006122 9.8e-130 468.8 934 45.5
Psat2g106600 Pisum sativum HOM05D004873 ORTHO05D006122 9.8e-130 468.8 778 53.3
Potri.010G094700 Populus trichocarpa HOM05D004873 ORTHO05D006122 2.2e-129 467.6 967 50.5
arahy.Tifrunner.gnm1.ann1.QGK7DH Arachis hypogaea HOM05D004873 ORTHO05D006122 3.7e-129 466.8 1005 46.0
DCAR_026543 Daucus carota HOM05D004873 ORTHO05D006122 4.8e-129 466.5 975 43.4
CSS0025142 Camellia sinensis var. sinensis HOM05D004873 ORTHO05D006122 8.3e-129 465.7 1005 47.3
MD13G1091200 Malus domestica HOM05D004873 ORTHO05D006122 2.4e-128 464.2 775 55.2
CsaV3_5G031610 Cucumis sativus L. HOM05D004873 ORTHO05D006122 5.4e-128 463.0 738 53.0
SGA_v2.0_scaffold165G38251 Striga asiatica HOM05D004873 ORTHO05D006122 5.4e-128 463.0 919 44.9
Cpa.g.sc69.19 Carica papaya HOM05D004873 ORTHO05D006122 2.0e-127 461.1 889 44.7
Glyma.02G034300 Glycine max HOM05D004873 ORTHO05D006122 4.5e-127 459.9 766 53.0
Lalb_Chr16g0392411 Lupinus albus HOM05D004873 ORTHO05D006122 4.5e-127 459.9 771 51.9
Peaxi162Scf00338g00218 Petunia axillaris HOM05D004873 ORTHO05D006122 1.3e-126 458.4 921 45.6
Eucgr.B03347 Eucalyptus grandis HOM05D004873 ORTHO05D006122 1.7e-126 458.0 849 47.0
Actinidia01706 Actinidia chinensis HOM05D004873 ORTHO05D006122 2.2e-126 457.6 987 46.3
PGSC0003DMG400030977 Solanum tuberosum HOM05D004873 ORTHO05D006122 6.5e-126 456.1 920 46.6
Sed0006362 Sechium edule HOM05D004873 ORTHO05D006122 8.5e-126 455.7 790 49.1
ClCG05G025280 Citrullus lanatus HOM05D004873 ORTHO05D006122 1.1e-125 455.3 1058 42.4
MELO3C012001.2 Cucumis melo HOM05D004873 ORTHO05D006122 1.1e-125 455.3 995 44.0
Nn4g22808 Nelumbo nucifera HOM05D004873 ORTHO05D006122 9.4e-125 452.2 961 48.2
Hma1.2p1_0867F.1_g230230 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 2.1e-124 451.1 815 47.7
Prupe.1G254700 Prunus persica HOM05D004873 ORTHO05D006122 4.7e-124 449.9 772 53.1
CAN.G376.10 Capsicum annuum HOM05D004873 ORTHO05D006122 3.0e-123 447.2 844 46.2
Dinv15307 Davidia involucrata HOM05D004873 ORTHO05D006122 8.8e-123 445.7 771 51.8
TPR.G13590 Trifolium pratense HOM05D004873 ORTHO05D006122 3.4e-122 443.7 1010 45.5
Aqoxy3G02990_Aqoxy3G02991 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 4.9e-121 439.9 952 43.2
MD16G1091700 Malus domestica HOM05D004873 ORTHO05D006122 8.3e-121 439.1 772 52.5
AUR62005371 Chenopodium quinoa HOM05D004873 ORTHO05D006122 1.1e-120 438.7 796 44.6
Sopen05g001620 Solanum pennellii HOM05D004873 ORTHO05D006122 1.8e-120 438.0 984 44.1
CANSAT01G1467 Cannabis sativa HOM05D004873 ORTHO05D006122 2.4e-120 437.6 947 45.4
Migut.L01408 Erythranthe guttata HOM05D004873 ORTHO05D006122 4.5e-119 433.3 909 45.1
HPP92_019184 Vanilla planifolia HOM05D004873 ORTHO05D006122 1.3e-118 431.8 941 44.7
Lj6A805G39 Lonicera japonica HOM05D004873 ORTHO05D006122 5.6e-117 426.4 1031 40.7
Lj2g0008447 Lotus japonicus HOM05D004873 ORTHO05D006122 5.6e-117 426.4 789 51.5
vmacro01183 Vaccinium macrocarpon HOM05D004873 ORTHO05D006122 2.8e-116 424.1 922 44.7
Lalb_Chr05g0228131 Lupinus albus HOM05D004873 ORTHO05D006122 6.1e-116 422.9 773 49.3
TAR622G0484 Trochodendron aralioides HOM05D004873 ORTHO05D006122 5.7e-114 416.4 958 43.9
Sc11g0001220 Simmondsia chinensis HOM05D004873 ORTHO05D006122 2.2e-113 414.5 755 50.5
MSTRG.7893 Avicennia marina HOM05D004873 ORTHO05D006122 6.4e-113 412.9 751 44.6
Nitab4.5_0000113g0270 Nicotiana tabacum HOM05D004873 ORTHO05D006122 3.2e-112 410.6 979 37.0
PGR102G2017 Punica granatum HOM05D004873 ORTHO05D006122 4.6e-111 406.8 856 45.8
ATR0691G293 Amborella trichopoda HOM05D004873 ORTHO05D006122 7.8e-111 406.0 959 46.4
TAR374G0217 Trochodendron aralioides HOM05D004873 ORTHO05D006122 7.8e-111 406.0 1003 44.4
Lalb_Chr05g0216921 Lupinus albus HOM05D004873 ORTHO05D006122 3.9e-110 403.7 742 47.6
Lsat_1_v5_gn_4_6981 Lactuca sativa HOM05D004873 ORTHO05D006122 5.0e-110 403.3 941 42.9
PSO063G1237 Papaver somniferum HOM05D004873 ORTHO05D006122 2.8e-108 397.5 981 46.4
Thecc.02G248000 Theobroma cacao HOM05D004873 ORTHO05D006122 6.2e-108 396.4 889 46.6
PSO832G2005 Papaver somniferum HOM05D004873 ORTHO05D006122 2.6e-106 391.0 993 45.3
ECA199G0004 Erigeron canadensis HOM05D004873 ORTHO05D006122 5.8e-106 389.8 906 45.4
AUR62014033 Chenopodium quinoa HOM05D004873 ORTHO05D006122 4.6e-103 380.2 843 40.1
Cc11_g14610 Coffea canephora HOM05D004873 ORTHO05D006122 6.0e-103 379.8 966 40.8
Zm00001eb042420 Zea mays HOM05D004873 ORTHO05D006122 6.0e-103 379.8 759 46.8
HanXRQChr12g0383471 Helianthus annuus HOM05D004873 ORTHO05D006122 4.7e-100 370.2 980 42.9
HPP92_019185 Vanilla planifolia HOM05D004873 ORTHO05D006122 2.3e-99 367.9 941 41.8
Rhsim12G0047400 Rhododendron simsii HOM05D004873 ORTHO05D006122 9.8e-98 362.5 904 43.5
EL10Ac6g13668 Beta vulgaris HOM05D004873 ORTHO05D006122 2.9e-97 360.9 987 43.1
unitig_27.g25195 Utricularia gibba HOM05D004873 ORTHO05D006122 1.9e-96 358.2 998 37.9
SEGI_30430 Sequoiadendron giganteum HOM05D004873 ORTHO05D006122 1.7e-94 351.7 787 50.1
Hund05991 Selenicereus undatus HOM05D004873 ORTHO05D006122 1.3e-89 335.5 893 44.1
Pp3c25_3310 Physcomitrium patens HOM05D004873 ORTHO05D006122 2.0e-82 311.6 952 41.7
Pp3c16_19090 Physcomitrium patens HOM05D004873 ORTHO05D006122 3.4e-82 310.8 847 45.5
Mapoly0148s0032 Marchantia polymorpha HOM05D004873 ORTHO05D006122 9.9e-82 309.3 828 46.0
Zm00001eb179020 Zea mays HOM05D004873 ORTHO05D006122 7.1e-80 303.1 682 47.1
TAR629G1177 Trochodendron aralioides HOM05D004873 ORTHO05D006122 2.1e-76 291.6 716 37.0
Ah.03g132650 Amaranthus hybridus HOM05D004873 ORTHO05D006122 1.5e-74 285.4 961 40.7
Nitab4.5_0010954g0010 Nicotiana tabacum HOM05D004873 ORTHO05D006122 7.4e-69 266.5 274 56.6
Oeu056734.1 Olea europaea HOM05D004873 ORTHO05D006122 5.3e-67 260.4 685 41.6
Solyc05g005620.4 Solanum lycopersicum HOM05D004873 ORTHO05D006122 6.4e-65 253.4 324 53.1
FvH4_4g34570 Fragaria vesca HOM05D004873 ORTHO05D006122 1.9e-56 225.3 278 48.9
Actinidia08168 Actinidia chinensis HOM05D004873 ORTHO05D006122 5.7e-53 213.8 765 39.9
CDE01G0488 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 1.3e-52 212.6 249 56.2
FAN12G0889 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.2e-50 206.1 262 48.1
SMO117G0118 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 6.5e-49 200.3 744 37.4
CBR_g45271 Chara braunii HOM05D000019 ORTHO05D000002 9.7e-45 186.4 324 47.2
PSO675G2898 Papaver somniferum HOM05D004873 ORTHO05D006122 2.6e-42 178.3 387 36.7
Os08g0416400 Oryza sativa ssp. japonica HOM05D004873 ORTHO05D006122 1.0e-38 166.4 478 34.1
CDE02G2297 Ceratophyllum demersum HOM05D001801 ORTHO05D001739 1.8e-38 165.6 157 56.7
CDE02G2726 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 3.1e-35 154.8 170 50.0
CDE01G0278 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 1.7e-33 149.1 472 35.0
SHI27198 Sapria himalayana HOM05D004873 ORTHO05D006122 2.4e-27 128.6 138 51.4
Aqoxy1G03520 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 6.5e-25 120.6 71 83.1
Medtr5g034435 Medicago truncatula HOM05D004873 ORTHO05D006122 2.3e-22 112.1 71 80.3
Sp6g02640 Schrenkiella parvula HOM05D004873 ORTHO05D006122 3.1e-19 101.7 124 52.4
Cre08.g375084 Chlamydomonas reinhardtii HOM05D004873 ORTHO05D006122 1.6e-18 99.4 131 45.8
MCO16G428 Micromonas commoda HOM05D004873 ORTHO05D006122 1.6e-18 99.4 93 47.3
Actinidia27784 Actinidia chinensis HOM05D004873 ORTHO05D026408 6.8e-14 84.0 173 34.1
SMO119G0006 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 5.7e-13 80.9 102 48.0
PSO017G6017 Papaver somniferum HOM05D004873 ORTHO05D006122 9.8e-13 80.1 144 36.1
PSO339G1217 Papaver somniferum HOM05D004873 ORTHO05D006122 4.8e-12 77.8 108 40.7
PRCOL_00005912 Prasinoderma coloniale HOM05D004873 ORTHO05D006122 1.1e-11 76.6 101 41.6
Lsat_1_v5_gn_5_2020 Lactuca sativa HOM05D004873 ORTHO05D026408 1.5e-08 66.2 140 35.7
Lsat_1_v5_gn_6_33360 Lactuca sativa HOM05D004873 ORTHO05D026408 4.2e-08 64.7 139 35.3
SMO351G0499 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 6.8e-06 57.4 102 42.2


User provided reference genes

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