Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10602 Brassica carinata HOM05D014740 ORTHO05D014483 1.1e-99 366.7 186 100.0
BcaC01g02079 Brassica carinata HOM05D001696 ORTHO05D014483 3.5e-71 271.9 239 66.1
BolC3t19134H Brassica oleracea HOM05D001696 ORTHO05D014483 1.7e-65 253.1 130 99.2
BolC4t24242H Brassica oleracea HOM05D001696 ORTHO05D014483 1.7e-65 253.1 130 99.2
C04p25670 Brassica napus HOM05D001696 ORTHO05D014483 2.0e-50 203.0 135 82.2
BcaC09g50178 Brassica carinata HOM05D001696 ORTHO05D001746 1.8e-22 110.2 59 89.8
BolC1t02742H Brassica oleracea HOM05D001696 ORTHO05D001746 1.8e-22 110.2 59 89.8
C01p28080 Brassica napus HOM05D001696 ORTHO05D001746 1.5e-21 107.1 59 88.1
A01p22580 Brassica napus HOM05D001696 ORTHO05D001746 4.9e-20 102.1 59 86.4
BraA01t02171Z Brassica rapa HOM05D001696 ORTHO05D001746 4.9e-20 102.1 59 86.4
BcaNung00315 Brassica carinata HOM05D001696 ORTHO05D001746 8.3e-20 101.3 57 84.2
BcaB02g07846 Brassica carinata HOM05D001696 ORTHO05D001746 4.1e-19 99.0 63 79.4
Sp7g13150 Schrenkiella parvula HOM05D001696 ORTHO05D001746 4.1e-19 99.0 68 75.0
AL7G40840 Arabidopsis lyrata HOM05D001696 ORTHO05D001746 5.4e-19 98.6 69 73.9
Carub.0007s2710 Capsella rubella HOM05D001696 ORTHO05D001746 4.5e-18 95.5 69 72.5
Thhalv10024461m.g Eutrema salsugineum HOM05D001696 ORTHO05D001746 4.5e-18 95.5 64 76.6
BraA04t16873Z Brassica rapa HOM05D014740 ORTHO05D014483 5.9e-18 95.1 45 97.8
BolC6t39690H Brassica oleracea HOM05D014740 ORTHO05D014483 1.0e-17 94.4 45 95.6
BraSC35t45993Z Brassica rapa HOM05D014740 ORTHO05D014483 1.7e-17 93.6 46 93.5
AT4G14990 Arabidopsis thaliana HOM05D001696 ORTHO05D001746 2.9e-17 92.8 71 67.6
CARHR221680 Cardamine hirsuta HOM05D001696 ORTHO05D001746 5.0e-17 92.0 75 65.3
AL3G36530 Arabidopsis lyrata HOM05D001696 ORTHO05D001746 8.6e-17 91.3 67 71.6
Carub.0003s2244 Capsella rubella HOM05D001696 ORTHO05D001746 8.6e-17 91.3 67 71.6
AT3G22270 Arabidopsis thaliana HOM05D001696 ORTHO05D001746 1.9e-16 90.1 67 70.1
C08p31570 Brassica napus HOM05D014740 ORTHO05D014483 1.9e-16 90.1 45 93.3
Thhalv10020108m.g Eutrema salsugineum HOM05D001696 ORTHO05D001746 2.5e-16 89.7 113 50.4
CARHR098170 Cardamine hirsuta HOM05D001696 ORTHO05D001746 4.3e-16 89.0 67 70.1
Aa31LG9G2350 Aethionema arabicum HOM05D001696 ORTHO05D001746 5.6e-16 88.6 66 68.2
Aa31LG8G8840 Aethionema arabicum HOM05D001696 ORTHO05D001746 2.8e-15 86.3 60 70.0
A05p26510 Brassica napus HOM05D001696 ORTHO05D001746 6.1e-15 85.1 67 67.2
BraA05t21523Z Brassica rapa HOM05D001696 ORTHO05D001746 6.1e-15 85.1 67 67.2
THA.LOC104808528 Tarenaya hassleriana HOM05D001696 ORTHO05D001746 6.1e-15 85.1 61 70.5
BcaC09g49162 Brassica carinata HOM05D001696 ORTHO05D001746 8.0e-15 84.7 65 67.7
BcaC09g49163 Brassica carinata HOM05D001696 ORTHO05D001746 8.0e-15 84.7 65 67.7
A01p32900 Brassica napus HOM05D001696 ORTHO05D001746 8.0e-15 84.7 65 67.7
C01p41980 Brassica napus HOM05D001696 ORTHO05D001746 8.0e-15 84.7 65 67.7
BraA01t03411Z Brassica rapa HOM05D001696 ORTHO05D001746 8.0e-15 84.7 65 67.7
BcaC05g28086 Brassica carinata HOM05D001696 ORTHO05D001746 1.0e-14 84.3 67 67.2
C05p41090 Brassica napus HOM05D001696 ORTHO05D001746 1.0e-14 84.3 67 67.2
BolC1t04154H Brassica oleracea HOM05D001696 ORTHO05D001746 1.0e-14 84.3 65 66.2
BolC5t32851H Brassica oleracea HOM05D001696 ORTHO05D001746 1.0e-14 84.3 67 67.2
Sp3g20060 Schrenkiella parvula HOM05D001696 ORTHO05D001746 1.0e-14 84.3 67 67.2
BcaB06g26331 Brassica carinata HOM05D001696 ORTHO05D001746 1.4e-14 84.0 67 65.7
BcaB04g20529 Brassica carinata HOM05D001696 ORTHO05D001746 2.3e-14 83.2 64 68.8
BcaB04g20530 Brassica carinata HOM05D001696 ORTHO05D001746 2.3e-14 83.2 64 68.8
THA.LOC104803017 Tarenaya hassleriana HOM05D001696 ORTHO05D001746 3.1e-14 82.8 61 70.5
C01p46280 Brassica napus HOM05D014740 ORTHO05D039110 2.0e-13 80.1 37 97.3
Cpa.g.sc8.302 Carica papaya HOM05D001696 ORTHO05D001746 1.7e-12 77.0 58 67.2
C03p52260 Brassica napus HOM05D001005 ORTHO05D000836 3.7e-12 75.9 60 65.0
BraA09t40060Z Brassica rapa HOM05D014740 ORTHO05D014483 6.0e-10 68.6 45 82.2
Haze_13638 Corylus avellana HOM05D001696 ORTHO05D001746 4.3e-08 62.4 56 57.1
Gohir.A11G156400 Gossypium hirsutum HOM05D001696 ORTHO05D001746 4.3e-08 62.4 88 44.3
CiPaw.03G198100 Carya illinoinensis HOM05D001696 ORTHO05D001746 7.3e-08 61.6 53 58.5
TWI34G0471 Tripterygium wilfordii HOM05D001696 ORTHO05D001746 7.3e-08 61.6 70 50.0
TWI60G1330 Tripterygium wilfordii HOM05D001696 ORTHO05D001746 9.5e-08 61.2 70 47.1
Gorai.007G174200 Gossypium raimondii HOM05D001696 ORTHO05D001746 1.2e-07 60.8 88 43.2
Cfa023526 Carpinus fangiana HOM05D001696 ORTHO05D001746 1.6e-07 60.5 56 55.4
CiPaw.03G198200 Carya illinoinensis HOM05D001696 ORTHO05D001746 1.6e-07 60.5 56 55.4
Duzib079G0001 Durio zibethinus HOM05D001696 ORTHO05D001746 1.6e-07 60.5 63 52.4
Duzib133G0041 Durio zibethinus HOM05D001696 ORTHO05D001746 1.6e-07 60.5 63 52.4
Duzib138G1550 Durio zibethinus HOM05D001696 ORTHO05D001746 1.6e-07 60.5 89 43.8
Gohir.D11G163500 Gossypium hirsutum HOM05D001696 ORTHO05D001746 2.8e-07 59.7 88 43.2
Gorai.001G212600 Gossypium raimondii HOM05D001696 ORTHO05D001746 2.8e-07 59.7 63 52.4
Gohir.D07G190500 Gossypium hirsutum HOM05D001696 ORTHO05D001746 3.6e-07 59.3 90 43.3
Gohir.A07G183800 Gossypium hirsutum HOM05D001696 ORTHO05D001746 4.7e-07 58.9 63 52.4
Prupe.3G188000 Prunus persica HOM05D001696 ORTHO05D001746 4.7e-07 58.9 56 53.6
QL04p059888 Quercus lobata HOM05D001696 ORTHO05D001746 4.7e-07 58.9 56 55.4
ClCG07G010860 Citrullus lanatus HOM05D001696 ORTHO05D001746 6.2e-07 58.5 56 53.6
COL.COLO4_07168 Corchorus olitorius HOM05D001696 ORTHO05D001746 6.2e-07 58.5 89 41.6
MELO3C016196.2 Cucumis melo HOM05D001696 ORTHO05D001746 6.2e-07 58.5 56 53.6
CsaV3_4G007450 Cucumis sativus L. HOM05D001696 ORTHO05D001746 6.2e-07 58.5 56 53.6
RcHm_v2.0_Chr2g0153871 Rosa chinensis HOM05D001696 ORTHO05D001746 6.2e-07 58.5 56 53.6
Thecc.01G171300 Theobroma cacao HOM05D001696 ORTHO05D001746 6.2e-07 58.5 63 52.4
CANSAT64G1648 Cannabis sativa HOM05D001696 ORTHO05D001746 8.0e-07 58.2 56 55.4
Sed0022727 Sechium edule HOM05D001696 ORTHO05D001746 8.0e-07 58.2 56 53.6
Gohir.A07G081100 Gossypium hirsutum HOM05D001696 ORTHO05D001746 1.4e-06 57.4 104 39.4
MD09G1137000 Malus domestica HOM05D001696 ORTHO05D001746 1.4e-06 57.4 56 53.6
Nn7g37783 Nelumbo nucifera HOM05D001696 ORTHO05D001746 1.4e-06 57.4 56 51.8
Nn7g37800 Nelumbo nucifera HOM05D001696 ORTHO05D001746 1.4e-06 57.4 56 53.6
TWI60G1584 Tripterygium wilfordii HOM05D001696 ORTHO05D001746 1.4e-06 57.4 70 45.7
FvH4_6g39760 Fragaria vesca HOM05D001696 ORTHO05D001746 1.8e-06 57.0 56 53.6
FAN02G1692 Fragaria x ananassa HOM05D001696 ORTHO05D001746 1.8e-06 57.0 56 53.6
FAN05G5029 Fragaria x ananassa HOM05D001696 ORTHO05D001746 1.8e-06 57.0 56 53.6
FAN09G0021 Fragaria x ananassa HOM05D001696 ORTHO05D001746 1.8e-06 57.0 56 53.6
FAN14G1999 Fragaria x ananassa HOM05D001696 ORTHO05D001746 1.8e-06 57.0 56 53.6
Gohir.D07G086700 Gossypium hirsutum HOM05D001696 ORTHO05D001746 1.8e-06 57.0 90 42.2
Gorai.001G092700 Gossypium raimondii HOM05D001696 ORTHO05D001746 1.8e-06 57.0 90 42.2
HanXRQChr16g0515271 Helianthus annuus HOM05D001696 ORTHO05D001746 1.8e-06 57.0 52 50.0
Aa31LG4G1910 Aethionema arabicum HOM05D001696 ORTHO05D001746 2.3e-06 56.6 52 53.8
Atru.chr8.956 Acer truncatum HOM05D001696 ORTHO05D001746 3.1e-06 56.2 118 35.6
BcaC01g01750 Brassica carinata HOM05D001658 ORTHO05D001406 3.1e-06 56.2 72 48.6
C03p72310 Brassica napus HOM05D001658 ORTHO05D001406 3.1e-06 56.2 72 48.6
ECA233G2692 Erigeron canadensis HOM05D001696 ORTHO05D001746 3.1e-06 56.2 52 50.0
HanXRQChr13g0387721 Helianthus annuus HOM05D001696 ORTHO05D001746 3.1e-06 56.2 52 51.9
Medtr2g069550 Medicago truncatula HOM05D001696 ORTHO05D001746 3.1e-06 56.2 56 51.8
Psat1g010880 Pisum sativum HOM05D001696 ORTHO05D001746 3.1e-06 56.2 84 38.1
Psat1g010920 Pisum sativum HOM05D001696 ORTHO05D001746 3.1e-06 56.2 56 51.8
Sed0017069 Sechium edule HOM05D001696 ORTHO05D001746 3.1e-06 56.2 56 51.8
BraA09t39498Z Brassica rapa HOM05D001658 ORTHO05D001406 4.0e-06 55.8 57 57.9
Ca_03683_v3 Cicer arietinum L. HOM05D001696 ORTHO05D001746 4.0e-06 55.8 56 50.0
Ciclev10013436m.g Citrus clementina HOM05D001696 ORTHO05D001746 4.0e-06 55.8 49 55.1
Lalb_Chr20g0108781 Lupinus albus HOM05D001696 ORTHO05D001746 4.0e-06 55.8 84 39.3
BcaB03g11999 Brassica carinata HOM05D001658 ORTHO05D001406 5.2e-06 55.5 63 54.0
Ca_03679_v3 Cicer arietinum L. HOM05D001696 ORTHO05D001746 5.2e-06 55.5 56 50.0
Duzib211G0358 Durio zibethinus HOM05D001696 ORTHO05D001746 5.2e-06 55.5 92 38.0
Sp1g22190 Schrenkiella parvula HOM05D001658 ORTHO05D001406 5.2e-06 55.5 55 58.2
A08p27420 Brassica napus HOM05D001658 ORTHO05D001406 6.8e-06 55.1 63 52.4
Lalb_Chr03g0031811 Lupinus albus HOM05D001696 ORTHO05D001746 6.8e-06 55.1 56 50.0
Lalb_Chr25g0285001 Lupinus albus HOM05D001696 ORTHO05D001746 6.8e-06 55.1 69 40.6
MD17G1127200 Malus domestica HOM05D001696 ORTHO05D001746 6.8e-06 55.1 121 38.0
Manes.14G015900 Manihot esculenta HOM05D001696 ORTHO05D001746 6.8e-06 55.1 74 37.8
PSO541G4068 Papaver somniferum HOM05D001696 ORTHO05D001746 6.8e-06 55.1 56 50.0
PSO675G7322 Papaver somniferum HOM05D001696 ORTHO05D001746 6.8e-06 55.1 56 50.0
TPR.G9746 Trifolium pratense HOM05D001696 ORTHO05D001746 6.8e-06 55.1 67 44.8
TWI34G0038 Tripterygium wilfordii HOM05D001696 ORTHO05D001746 6.8e-06 55.1 70 44.3
vmacro06022 Vaccinium macrocarpon HOM05D001696 ORTHO05D001746 6.8e-06 55.1 64 48.4
arahy.Tifrunner.gnm1.ann1.6BML15 Arachis hypogaea HOM05D001696 ORTHO05D001746 8.9e-06 54.7 56 48.2
arahy.Tifrunner.gnm1.ann1.90KKP0 Arachis hypogaea HOM05D001696 ORTHO05D001746 8.9e-06 54.7 56 48.2
BcaC05g26407 Brassica carinata HOM05D001658 ORTHO05D001406 8.9e-06 54.7 34 73.5
A09p40000 Brassica napus HOM05D001658 ORTHO05D001406 8.9e-06 54.7 53 60.4
C05p24440 Brassica napus HOM05D001658 ORTHO05D001406 8.9e-06 54.7 34 73.5
BolC5t31177H Brassica oleracea HOM05D001658 ORTHO05D001406 8.9e-06 54.7 34 73.5
Hund06723 Selenicereus undatus HOM05D001696 ORTHO05D001746 8.9e-06 54.7 79 41.8
SGA_v2.0_scaffold49G18384 Striga asiatica HOM05D001696 ORTHO05D001746 8.9e-06 54.7 69 44.9


User provided reference genes

Program Settings