Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10502 Brassica carinata HOM05D005480 ORTHO05D006735 3.3e-36 154.5 75 100.0
C04p28170 Brassica napus HOM05D005480 ORTHO05D006735 3.3e-36 154.5 75 100.0
BolC4t24360H Brassica oleracea HOM05D005480 ORTHO05D006735 3.3e-36 154.5 75 100.0
C04p33290 Brassica napus HOM05D005480 ORTHO05D006735 6.5e-32 140.2 89 82.0
BolC4t24894H Brassica oleracea HOM05D005480 ORTHO05D006735 4.4e-28 127.5 76 88.2
Dinv26753 Davidia involucrata HOM05D005480 ORTHO05D006735 9.4e-15 83.2 62 67.7
Sp7g34650 Schrenkiella parvula HOM05D005480 ORTHO05D006735 9.4e-15 83.2 63 63.5
Thhalv10025060m.g Eutrema salsugineum HOM05D005480 ORTHO05D006735 1.6e-14 82.4 65 67.7
Cfa004218 Carpinus fangiana HOM05D005480 ORTHO05D006735 3.6e-14 81.3 49 75.5
Haze_15193 Corylus avellana HOM05D005480 ORTHO05D006735 3.6e-14 81.3 49 75.5
BcaNung03510 Brassica carinata HOM05D005480 ORTHO05D006735 6.1e-14 80.5 45 84.4
CiPaw.01G026500 Carya illinoinensis HOM05D005480 ORTHO05D006735 1.0e-13 79.7 44 79.5
Lj7A18T44 Lonicera japonica HOM05D005480 ORTHO05D006735 1.0e-13 79.7 85 51.8
Lj7A20T61 Lonicera japonica HOM05D005480 ORTHO05D006735 1.0e-13 79.7 85 51.8
CANSAT01G1679 Cannabis sativa HOM05D005480 ORTHO05D006735 1.4e-13 79.3 81 56.8
A01p01950 Brassica napus HOM05D005480 ORTHO05D006735 1.8e-13 79.0 45 82.2
BraA01t00184Z Brassica rapa HOM05D005480 ORTHO05D006735 1.8e-13 79.0 45 82.2
Prupe.7G142300 Prunus persica HOM05D005480 ORTHO05D006735 1.8e-13 79.0 62 64.5
C01p02120 Brassica napus HOM05D005480 ORTHO05D006735 2.3e-13 78.6 45 82.2
BolC1t00204H Brassica oleracea HOM05D005480 ORTHO05D006735 2.3e-13 78.6 45 82.2
QL06p043724 Quercus lobata HOM05D005480 ORTHO05D006735 2.3e-13 78.6 49 73.5
Eucgr.H01972 Eucalyptus grandis HOM05D005480 ORTHO05D006735 3.0e-13 78.2 65 63.1
GSVIVG01005079001 Vitis vinifera HOM05D005480 ORTHO05D006735 3.0e-13 78.2 49 73.5
Carub.0007s0332 Capsella rubella HOM05D005480 ORTHO05D006735 4.0e-13 77.8 59 64.4
AUR62003828 Chenopodium quinoa HOM05D005480 ORTHO05D006735 4.0e-13 77.8 44 72.7
Sc03g0001260 Simmondsia chinensis HOM05D005480 ORTHO05D006735 4.0e-13 77.8 84 51.2
AL7G13910 Arabidopsis lyrata HOM05D005480 ORTHO05D006735 5.2e-13 77.4 63 60.3
AT4G37130 Arabidopsis thaliana HOM05D005480 ORTHO05D006735 5.2e-13 77.4 63 60.3
Dinv39906 Davidia involucrata HOM05D005480 ORTHO05D006735 5.2e-13 77.4 49 73.5
Glyma.11G059700 Glycine max HOM05D005480 ORTHO05D006735 5.2e-13 77.4 65 61.5
Lj2g0021055 Lotus japonicus HOM05D005480 ORTHO05D006735 5.2e-13 77.4 61 63.9
Actinidia12077 Actinidia chinensis HOM05D005480 ORTHO05D006735 6.8e-13 77.0 66 60.6
FvH4_1g14810 Fragaria vesca HOM05D005480 ORTHO05D006735 6.8e-13 77.0 65 56.9
FAN19G1500 Fragaria x ananassa HOM05D005480 ORTHO05D006735 6.8e-13 77.0 65 56.9
FAN23G2977 Fragaria x ananassa HOM05D005480 ORTHO05D006735 6.8e-13 77.0 65 56.9
FAN28G0426 Fragaria x ananassa HOM05D005480 ORTHO05D006735 6.8e-13 77.0 65 56.9
MD02G1161300 Malus domestica HOM05D005480 ORTHO05D006735 6.8e-13 77.0 84 52.4
THA.LOC104819823 Tarenaya hassleriana HOM05D005480 ORTHO05D006735 6.8e-13 77.0 44 75.0
CSS0014684 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 8.8e-13 76.6 62 61.3
Cc07_g05560 Coffea canephora HOM05D005480 ORTHO05D006735 8.8e-13 76.6 44 77.3
MELO3C007529.2 Cucumis melo HOM05D005480 ORTHO05D006735 8.8e-13 76.6 44 75.0
MD15G1275400 Malus domestica HOM05D005480 ORTHO05D006735 8.8e-13 76.6 49 71.4
Glyma.01G181500 Glycine max HOM05D005480 ORTHO05D006735 1.2e-12 76.3 65 60.0
Sed0026694 Sechium edule HOM05D005480 ORTHO05D006735 1.2e-12 76.3 61 63.9
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 1.5e-12 75.9 65 56.9
arahy.Tifrunner.gnm1.ann1.E9URZA Arachis hypogaea HOM05D005480 ORTHO05D006735 1.5e-12 75.9 49 69.4
arahy.Tifrunner.gnm1.ann1.HXIH5S Arachis hypogaea HOM05D005480 ORTHO05D006735 1.5e-12 75.9 49 69.4
Ciclev10025487m.g Citrus clementina HOM05D005480 ORTHO05D006735 1.5e-12 75.9 62 61.3
Gohir.A12G068600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 1.5e-12 75.9 84 52.4
Lalb_Chr09g0322931 Lupinus albus HOM05D005480 ORTHO05D006735 1.5e-12 75.9 44 75.0
Aqoxy5G01417 Aquilegia oxysepala HOM05D005480 ORTHO05D006735 2.0e-12 75.5 84 53.6
DCAR_021432 Daucus carota HOM05D005480 ORTHO05D006735 2.0e-12 75.5 83 48.2
ECA232G3160 Erigeron canadensis HOM05D005480 ORTHO05D006735 2.0e-12 75.5 44 77.3
Potri.007G036600 Populus trichocarpa HOM05D005480 ORTHO05D006735 2.0e-12 75.5 44 75.0
TAR381G0420 Trochodendron aralioides HOM05D005480 ORTHO05D006735 2.0e-12 75.5 49 67.3
TAR625G1062 Trochodendron aralioides HOM05D005480 ORTHO05D006735 2.0e-12 75.5 81 49.4
ATR0733G143 Amborella trichopoda HOM05D005480 ORTHO05D006735 2.6e-12 75.1 46 71.7
Ca_24802_v3 Cicer arietinum L. HOM05D005480 ORTHO05D006735 2.6e-12 75.1 49 67.3
FAN26G2127 Fragaria x ananassa HOM05D005480 ORTHO05D006735 2.6e-12 75.1 44 70.5
Phvul.002G022500 Phaseolus vulgaris HOM05D005480 ORTHO05D006735 2.6e-12 75.1 83 47.0
Lalb_Chr05g0213141 Lupinus albus HOM05D005480 ORTHO05D006735 3.4e-12 74.7 44 72.7
RcHm_v2.0_Chr2g0103771 Rosa chinensis HOM05D005480 ORTHO05D006735 3.4e-12 74.7 43 72.1
AUR62001975 Chenopodium quinoa HOM05D005480 ORTHO05D006735 4.4e-12 74.3 44 70.5
CsaV3_6G042900 Cucumis sativus L. HOM05D005480 ORTHO05D006735 4.4e-12 74.3 44 72.7
MSTRG.23794 Avicennia marina HOM05D005480 ORTHO05D006735 5.7e-12 73.9 62 58.1
CAN.G836.34 Capsicum annuum HOM05D005480 ORTHO05D006735 5.7e-12 73.9 62 62.9
CARHR245380 Cardamine hirsuta HOM05D005480 ORTHO05D006735 5.7e-12 73.9 59 61.0
Psat2g164160 Pisum sativum HOM05D005480 ORTHO05D006735 5.7e-12 73.9 44 70.5
PGR102G0042 Punica granatum HOM05D005480 ORTHO05D006735 5.7e-12 73.9 49 67.3
Hund13586 Selenicereus undatus HOM05D005480 ORTHO05D006735 5.7e-12 73.9 43 76.7
vmacro05295 Vaccinium macrocarpon HOM05D005480 ORTHO05D006735 5.7e-12 73.9 84 51.2
COL.COLO4_11327 Corchorus olitorius HOM05D005480 ORTHO05D006735 7.5e-12 73.6 44 70.5
CSS0005424 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 9.7e-12 73.2 43 74.4
Migut.H00485 Erythranthe guttata HOM05D005480 ORTHO05D006735 9.7e-12 73.2 43 72.1
Gorai.008G072400 Gossypium raimondii HOM05D005480 ORTHO05D006735 9.7e-12 73.2 43 74.4
Medtr5g018390 Medicago truncatula HOM05D005480 ORTHO05D006735 9.7e-12 73.2 44 68.2
Nn6g32121 Nelumbo nucifera HOM05D005480 ORTHO05D006735 9.7e-12 73.2 44 72.7
Thecc.01G048100 Theobroma cacao HOM05D005480 ORTHO05D006735 9.7e-12 73.2 61 57.4
VMungo1215G2543 Vigna mungo HOM05D005480 ORTHO05D006735 9.7e-12 73.2 43 72.1
Rhsim02G0168000 Rhododendron simsii HOM05D005480 ORTHO05D006735 1.3e-11 72.8 84 46.4
HanXRQChr04g0123741 Helianthus annuus HOM05D005480 ORTHO05D006735 1.7e-11 72.4 44 72.7
MBI16_g19897_MAGBIO Magnolia biondii HOM05D005480 ORTHO05D006735 1.7e-11 72.4 72 48.6
HPP92_016040 Vanilla planifolia HOM05D005480 ORTHO05D006735 1.7e-11 72.4 63 57.1
Nitab4.5_0001014g0070 Nicotiana tabacum HOM05D005480 ORTHO05D006735 2.8e-11 71.6 44 77.3
Sabra07G0032600 Salix brachista HOM05D005480 ORTHO05D006735 2.8e-11 71.6 44 72.7
Lsat_1_v5_gn_4_179460 Lactuca sativa HOM05D005480 ORTHO05D006735 3.7e-11 71.2 44 70.5
Manes.13G130100 Manihot esculenta HOM05D005480 ORTHO05D006735 3.7e-11 71.2 62 58.1
SGA_v2.0_scaffold15G07231 Striga asiatica HOM05D005480 ORTHO05D006735 3.7e-11 71.2 43 72.1
TPR.G11349 Trifolium pratense HOM05D005480 ORTHO05D006735 3.7e-11 71.2 59 59.3
unitig_899.g14972 Utricularia gibba HOM05D005480 ORTHO05D006735 3.7e-11 71.2 44 63.6
Gohir.D12G090600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 4.8e-11 70.9 43 69.8
Solyc02g090230.4 Solanum lycopersicum HOM05D005480 ORTHO05D006735 4.8e-11 70.9 62 59.7
Sopen02g034920 Solanum pennellii HOM05D005480 ORTHO05D006735 4.8e-11 70.9 62 59.7
PGSC0003DMG400010074 Solanum tuberosum HOM05D005480 ORTHO05D006735 4.8e-11 70.9 62 59.7
Oeu003952.2 Olea europaea HOM05D005480 ORTHO05D006735 6.3e-11 70.5 43 67.4
Peaxi162Scf00993g00022 Petunia axillaris HOM05D005480 ORTHO05D006735 6.3e-11 70.5 44 75.0
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 6.3e-11 70.5 43 74.4
SGA_v2.0_scaffold135G34951 Striga asiatica HOM05D005480 ORTHO05D006735 6.3e-11 70.5 74 51.4
Nitab4.5_0000108g0300 Nicotiana tabacum HOM05D005480 ORTHO05D006735 8.3e-11 70.1 44 75.0
Hma1.2p1_0546F.1_g176180 Hydrangea macrophylla HOM05D005480 ORTHO05D006735 1.1e-10 69.7 62 56.5
Duzib147G0741 Durio zibethinus HOM05D005480 ORTHO05D006735 1.4e-10 69.3 61 55.7
Os09g0453500 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 2.4e-10 68.6 62 46.8
PSO170G5089 Papaver somniferum HOM05D005480 ORTHO05D006735 2.4e-10 68.6 44 72.7
PSO210G7251 Papaver somniferum HOM05D005480 ORTHO05D006735 2.4e-10 68.6 44 72.7
ClCG01G016580 Citrullus lanatus HOM05D005480 ORTHO05D006735 3.1e-10 68.2 44 65.9
Duzib187G0998 Durio zibethinus HOM05D005480 ORTHO05D006735 3.1e-10 68.2 44 65.9
BcaC01g00434 Brassica carinata HOM05D005480 ORTHO05D006735 4.1e-10 67.8 41 78.0
C03p79710 Brassica napus HOM05D005480 ORTHO05D006735 4.1e-10 67.8 41 78.0
BolC3t20222H Brassica oleracea HOM05D005480 ORTHO05D006735 4.1e-10 67.8 41 78.0
SEGI_40098 Sequoiadendron giganteum HOM05D005480 ORTHO05D006735 5.3e-10 67.4 62 53.2
Aa31LG6G13860 Aethionema arabicum HOM05D005480 ORTHO05D006735 7.0e-10 67.0 65 55.4
A08p22500 Brassica napus HOM05D005480 ORTHO05D006735 9.1e-10 66.6 41 75.6
BraA08t34205Z Brassica rapa HOM05D005480 ORTHO05D006735 9.1e-10 66.6 41 75.6
CDE02G2721 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 9.1e-10 66.6 43 69.8
CDE01G0732 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 1.2e-09 66.2 43 67.4
BcaB03g12364 Brassica carinata HOM05D005480 ORTHO05D006735 2.7e-09 65.1 41 75.6
BcaB03g12366 Brassica carinata HOM05D005480 ORTHO05D006735 2.7e-09 65.1 41 75.6
Ah.03g144040 Amaranthus hybridus HOM05D005480 ORTHO05D006735 2.2e-08 62.0 66 47.0
SHI08751 Sapria himalayana HOM05D005480 ORTHO05D006735 2.9e-08 61.6 44 63.6
Zm00001eb314700 Zea mays HOM05D005480 ORTHO05D006735 7.2e-07 57.0 40 60.0
Zm00001eb100530 Zea mays HOM05D005480 ORTHO05D006735 1.2e-06 56.2 40 57.5
AagrBONN_evm.TU.Sc2ySwM_117.4106 Anthoceros agrestis HOM05D005480 ORTHO05D006735 2.1e-06 55.5 40 65.0
Pp3c24_6760 Physcomitrium patens HOM05D005480 ORTHO05D006735 4.7e-06 54.3 37 62.2


User provided reference genes

Program Settings