Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10451 Brassica carinata HOM05D001808 ORTHO05D001747 2.0e-73 278.9 131 100.0
BcaC01g02945 Brassica carinata HOM05D001808 ORTHO05D001747 1.3e-27 126.7 80 81.2
C03p58030 Brassica napus HOM05D001808 ORTHO05D001747 4.9e-27 124.8 80 80.0
BolC3t18077H Brassica oleracea HOM05D001808 ORTHO05D001747 4.9e-27 124.8 80 80.0
BcaB08g34705 Brassica carinata HOM05D001808 ORTHO05D001747 7.1e-26 120.9 80 76.2
A06p34170 Brassica napus HOM05D001808 ORTHO05D001747 9.3e-26 120.6 80 77.5
BraA06t26349Z Brassica rapa HOM05D001808 ORTHO05D001747 9.3e-26 120.6 80 77.5
Thhalv10022752m.g Eutrema salsugineum HOM05D001808 ORTHO05D001747 4.5e-20 101.7 80 66.2
Sp3g30450 Schrenkiella parvula HOM05D001808 ORTHO05D001747 7.6e-20 100.9 81 63.0
BolC6t36660H Brassica oleracea HOM05D000005 ORTHO05D040679 8.4e-19 97.4 50 84.0
BcaC06g36306 Brassica carinata HOM05D020860 ORTHO05D091946 6.0e-17 91.3 45 86.7
AL3G49970 Arabidopsis lyrata HOM05D001808 ORTHO05D001747 7.9e-17 90.9 82 61.0
BcaB03g16458 Brassica carinata HOM05D001808 ORTHO05D001747 2.3e-16 89.4 81 61.7
BolC7t41055H Brassica oleracea HOM05D001808 ORTHO05D001747 3.0e-16 89.0 81 61.7
C07p06380 Brassica napus HOM05D001808 ORTHO05D001747 6.7e-16 87.8 81 60.5
A07p04020 Brassica napus HOM05D001808 ORTHO05D001747 1.5e-15 86.7 81 59.3
BraA07t28193Z Brassica rapa HOM05D001808 ORTHO05D001747 1.5e-15 86.7 81 59.3
BcaC06g36221 Brassica carinata HOM05D001808 ORTHO05D001747 2.5e-15 85.9 81 59.3
Aa31LG8G14520 Aethionema arabicum HOM05D001808 ORTHO05D001747 2.8e-14 82.4 81 55.6
THA.LOC104807395 Tarenaya hassleriana HOM05D001808 ORTHO05D001747 4.8e-14 81.6 80 53.8
CARHR293440 Cardamine hirsuta HOM05D001808 ORTHO05D001747 8.2e-14 80.9 81 51.9
THA.LOC104819682 Tarenaya hassleriana HOM05D001808 ORTHO05D001747 6.9e-13 77.8 80 51.2
PGR042G0899 Punica granatum HOM05D001808 ORTHO05D001747 4.5e-12 75.1 79 48.1
BcaC01g02579 Brassica carinata HOM05D020860 ORTHO05D031811 2.5e-10 69.3 32 90.6
Cc09_g10620 Coffea canephora HOM05D001808 ORTHO05D001747 5.5e-10 68.2 80 41.2
DCAR_006293 Daucus carota HOM05D001808 ORTHO05D001747 7.2e-10 67.8 79 45.6
QL11p054553 Quercus lobata HOM05D001808 ORTHO05D001747 9.3e-10 67.4 86 43.0
QL11p054397 Quercus lobata HOM05D001808 ORTHO05D001747 2.1e-09 66.2 86 41.9
CiPaw.05G089300 Carya illinoinensis HOM05D001808 ORTHO05D001747 3.5e-09 65.5 79 44.3
Eucgr.I01508 Eucalyptus grandis HOM05D001808 ORTHO05D001747 4.6e-09 65.1 80 40.0
AUR62012939 Chenopodium quinoa HOM05D001808 ORTHO05D001747 6.1e-09 64.7 109 37.6
Hund06153 Selenicereus undatus HOM05D001808 ORTHO05D001747 7.9e-09 64.3 80 43.8
CiPaw.05G089600 Carya illinoinensis HOM05D001808 ORTHO05D001747 1.0e-08 63.9 68 48.5
Glyma.13G358900 Glycine max HOM05D000013 ORTHO05D000011 1.3e-08 63.5 85 41.2
Lalb_Chr07g0188281 Lupinus albus HOM05D001808 ORTHO05D001747 1.3e-08 63.5 84 41.7
EL10Ac9g21269 Beta vulgaris HOM05D001808 ORTHO05D001747 5.1e-08 61.6 80 46.2
FvH4_2g16381 Fragaria vesca HOM05D001808 ORTHO05D001747 6.7e-08 61.2 80 40.0
FAN24G0071 Fragaria x ananassa HOM05D000807 ORTHO05D000662 6.7e-08 61.2 80 40.0
FAN24G2736 Fragaria x ananassa HOM05D000807 ORTHO05D000662 6.7e-08 61.2 80 40.0
Phvul.002G188800 Phaseolus vulgaris HOM05D001808 ORTHO05D001747 6.7e-08 61.2 78 42.3
Thecc.02G046800 Theobroma cacao HOM05D001808 ORTHO05D001747 6.7e-08 61.2 130 31.5
Lalb_Chr12g0209111 Lupinus albus HOM05D001808 ORTHO05D001747 8.7e-08 60.8 85 38.8
TWI79G1212 Tripterygium wilfordii HOM05D001808 ORTHO05D001747 8.7e-08 60.8 76 44.7
Actinidia26335 Actinidia chinensis HOM05D001808 ORTHO05D001747 1.1e-07 60.5 79 38.0
Hma1.2p1_0271F.1_g109010 Hydrangea macrophylla HOM05D001808 ORTHO05D001747 1.5e-07 60.1 78 41.0
Hma1.2p1_0271F.1_g109025 Hydrangea macrophylla HOM05D001808 ORTHO05D001747 1.5e-07 60.1 78 41.0
Manes.04G065032 Manihot esculenta HOM05D001808 ORTHO05D001747 1.9e-07 59.7 80 45.0
Sc08g0002480 Simmondsia chinensis HOM05D001808 ORTHO05D001747 1.9e-07 59.7 80 42.5
TAR381G1553 Trochodendron aralioides HOM05D001808 ORTHO05D001747 1.9e-07 59.7 80 38.8
CiPaw.05G089700 Carya illinoinensis HOM05D001808 ORTHO05D001747 2.5e-07 59.3 80 43.8
Gohir.A12G033900 Gossypium hirsutum HOM05D001808 ORTHO05D001747 3.3e-07 58.9 78 38.5
Gohir.D12G038600 Gossypium hirsutum HOM05D001808 ORTHO05D001747 3.3e-07 58.9 78 39.7
Glyma.05G133700 Glycine max HOM05D001808 ORTHO05D001747 4.3e-07 58.5 83 37.3
Sabra09G0111100 Salix brachista HOM05D001808 ORTHO05D001747 4.3e-07 58.5 80 40.0
CSS0018974 Camellia sinensis var. sinensis HOM05D001808 ORTHO05D001747 5.7e-07 58.2 116 31.9
Potri.004G183500 Populus trichocarpa HOM05D001808 ORTHO05D001747 5.7e-07 58.2 78 39.7
Potri.009G143300 Populus trichocarpa HOM05D001808 ORTHO05D001747 5.7e-07 58.2 79 41.8
FAN27G0176 Fragaria x ananassa HOM05D000807 ORTHO05D000662 7.4e-07 57.8 80 40.0
Prupe.8G176700 Prunus persica HOM05D001808 ORTHO05D001747 7.4e-07 57.8 76 43.4
PGSC0003DMG400018637 Solanum tuberosum HOM05D001808 ORTHO05D001747 7.4e-07 57.8 83 36.1
Hma1.2p1_0032F.1_g018860 Hydrangea macrophylla HOM05D001808 ORTHO05D001747 9.7e-07 57.4 83 39.8
Carub.0003s3105 Capsella rubella HOM05D001808 ORTHO05D001747 1.3e-06 57.0 63 44.4
MBI05_g05137_MAGBIO Magnolia biondii HOM05D001808 ORTHO05D001747 1.3e-06 57.0 84 35.7
Ciclev10028533m.g Citrus clementina HOM05D001808 ORTHO05D001747 1.6e-06 56.6 92 33.7
Peaxi162Scf00362g00249 Petunia axillaris HOM05D001808 ORTHO05D001747 1.6e-06 56.6 79 35.4
AT2G17120 Arabidopsis thaliana HOM05D001808 ORTHO05D001747 2.8e-06 55.8 69 43.5
CiPaw.05G089500 Carya illinoinensis HOM05D001808 ORTHO05D001747 2.8e-06 55.8 81 40.7
Lj9C405T4 Lonicera japonica HOM05D001808 ORTHO05D001747 2.8e-06 55.8 122 31.1
Nitab4.5_0016563g0010 Nicotiana tabacum HOM05D001808 ORTHO05D001747 2.8e-06 55.8 120 28.3
vmacro17289 Vaccinium macrocarpon HOM05D001808 ORTHO05D001747 2.8e-06 55.8 80 37.5
Nitab4.5_0000783g0270 Nicotiana tabacum HOM05D001808 ORTHO05D001747 3.7e-06 55.5 120 28.3
CAN.G1235.14 Capsicum annuum HOM05D001808 ORTHO05D001747 4.8e-06 55.1 79 35.4
ECA233G3704 Erigeron canadensis HOM05D000006 ORTHO05D000091 4.8e-06 55.1 82 40.2
PGR142G2648 Punica granatum HOM05D001808 ORTHO05D001747 4.8e-06 55.1 80 38.8
Solyc01g112080.3 Solanum lycopersicum HOM05D001808 ORTHO05D001747 4.8e-06 55.1 109 33.9
Sopen01g054130 Solanum pennellii HOM05D001808 ORTHO05D001747 4.8e-06 55.1 109 33.9
VMungo0251G0978 Vigna mungo HOM05D001808 ORTHO05D001747 6.3e-06 54.7 80 38.8
Ah.01g007730 Amaranthus hybridus HOM05D001808 ORTHO05D001747 8.2e-06 54.3 79 40.5
RcHm_v2.0_Chr6g0280171 Rosa chinensis HOM05D001808 ORTHO05D001747 8.2e-06 54.3 80 36.2


User provided reference genes

Program Settings