Gene: AT2G17120

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G17120
  • Transcript Identifier AT2G17120.1
  • Gene Type Coding gene
  • Location Chr2 : 7459156-7460648 : positive

Gene Family Information

  • ID HOM05D001808
  • #Genes/#Species 362/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G17120.1
  • symbol LYM2
  • Alias CL-1,CEBiP-like 1,LYP1,LysM-containing receptor protein 1
  • full_name lysM domain GPI-anchored protein 2 precursor
  • uniprot O23006

Descriptions

  • Description lysm domain GPI-anchored protein 2 precursor
  • Computational description lysm domain GPI-anchored protein 2 precursor (LYM2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392), Peptidoglycan-binding Lysin subgroup (InterPro:IPR002482); BEST Arabidopsis thaliana protein match is: lysm domain GPI-anchored protein 1 precursor (TAIR:AT1G21880.2); Has 636 Blast hits to 591 proteins in 145 species: Archae - 0; Bacteria - 285; Metazoa - 0; Fungi - 0; Plants - 336; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006952
IEA
GOA Databasedefense response

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008061
IEA
GOA Databasechitin binding
GO:0008061
IDA
Gene Ontologychitin binding1
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding Os03g0133400
GO:0043621
ISO
PLAZA Integrative Orthologyprotein self-association Os03g0133400

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031225
IEA
GOA Databaseanchored component of membrane
GO:0031225
TAS
Gene Ontologyanchored component of membrane2
GO:0046658
IDA
Gene Ontologyanchored component of plasma membrane3
GO:0005886
IDA
IEA
GOA Databaseplasma membrane
GO:0005886
HDA
Gene Ontologyplasma membrane4
GO:0009506
IDA
GOA Databaseplasmodesma
GO:0009506
HDA
Gene Ontologyplasmodesma5
GO:0005739
HDA
Gene Ontologymitochondrion6
GO:0016020
IEA
GOA Databasemembrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR018392 LysM domain
IPR036779 LysM domain superfamily
Mapman id Description
26.9.1.2.2 External stimuli response.pathogen.pattern-triggered immunity (PTI) network.fungal elicitor response.chitin receptor protein kinase (CEBiP)