Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10042 Brassica carinata HOM05D001717 ORTHO05D027502 6.6e-33 144.1 110 100.0
C04p33600 Brassica napus HOM05D001717 ORTHO05D027502 5.8e-21 104.4 53 100.0
BcaB01g04439 Brassica carinata HOM05D001717 ORTHO05D007217 1.2e-15 86.7 45 93.3
BcaB05g22312 Brassica carinata HOM05D001717 ORTHO05D007217 1.2e-15 86.7 45 93.3
BcaB08g36018 Brassica carinata HOM05D001717 ORTHO05D007217 1.2e-15 86.7 45 93.3
BcaB08g36021 Brassica carinata HOM05D001717 ORTHO05D007217 1.2e-15 86.7 45 93.3
BcaB08g36024 Brassica carinata HOM05D001717 ORTHO05D007217 1.2e-15 86.7 45 93.3
C03p15210 Brassica napus HOM05D001717 ORTHO05D007217 1.2e-15 86.7 45 93.3
BraA03t10613Z Brassica rapa HOM05D001717 ORTHO05D007217 1.2e-15 86.7 45 93.3
BolC4t24928H Brassica oleracea HOM05D001717 ORTHO05D027502 2.1e-15 85.9 42 100.0
A03p13030 Brassica napus HOM05D001717 ORTHO05D007217 3.6e-15 85.1 44 93.2
BolC3t13962H Brassica oleracea HOM05D001717 ORTHO05D007217 4.7e-15 84.7 45 91.1
AT5G57030 Arabidopsis thaliana HOM05D001717 ORTHO05D007217 8.1e-15 84.0 45 88.9
CARHR270780 Cardamine hirsuta HOM05D001717 ORTHO05D007217 8.1e-15 84.0 45 88.9
BcaC01g06460 Brassica carinata HOM05D001717 ORTHO05D007217 1.4e-14 83.2 43 93.0
Thhalv10013234m.g Eutrema salsugineum HOM05D001717 ORTHO05D007217 1.8e-14 82.8 45 86.7
AL8G32930 Arabidopsis lyrata HOM05D001717 ORTHO05D007217 2.4e-14 82.4 45 86.7
Sp6g18740 Schrenkiella parvula HOM05D001717 ORTHO05D007217 2.4e-14 82.4 45 86.7
BcaC04g20021 Brassica carinata HOM05D001717 ORTHO05D007217 1.5e-13 79.7 44 84.1
C09p48690 Brassica napus HOM05D001717 ORTHO05D007217 1.5e-13 79.7 44 84.1
Aa31LG3G12920 Aethionema arabicum HOM05D001717 ORTHO05D007217 2.0e-13 79.3 45 82.2
A10p14350 Brassica napus HOM05D001717 ORTHO05D007217 2.0e-13 79.3 42 88.1
BraA10t43526Z Brassica rapa HOM05D001717 ORTHO05D007217 2.0e-13 79.3 42 88.1
Carub.0008s1753 Capsella rubella HOM05D001717 ORTHO05D007217 2.6e-13 79.0 45 82.2
BcaB08g36016 Brassica carinata HOM05D001717 ORTHO05D007217 5.8e-13 77.8 42 88.1
Gorai.009G032900 Gossypium raimondii HOM05D001717 ORTHO05D007217 5.8e-13 77.8 45 77.8
Gohir.A05G031300 Gossypium hirsutum HOM05D001717 ORTHO05D007217 1.3e-12 76.6 45 75.6
Gohir.D05G032700 Gossypium hirsutum HOM05D001717 ORTHO05D007217 1.3e-12 76.6 45 75.6
Thecc.09G084800 Theobroma cacao HOM05D001717 ORTHO05D007217 1.3e-12 76.6 45 75.6
BolC9t57717H Brassica oleracea HOM05D001717 ORTHO05D007217 1.7e-12 76.3 46 82.6
COL.COLO4_18171 Corchorus olitorius HOM05D001717 ORTHO05D007217 2.2e-12 75.9 45 73.3
Duzib187G0409 Durio zibethinus HOM05D001717 ORTHO05D007217 2.2e-12 75.9 45 73.3
Actinidia38458 Actinidia chinensis HOM05D001717 ORTHO05D007217 3.8e-12 75.1 45 73.3
Peaxi162Scf00498g00430 Petunia axillaris HOM05D001717 ORTHO05D007217 6.4e-12 74.3 52 65.4
vmacro06304 Vaccinium macrocarpon HOM05D001717 ORTHO05D007217 1.1e-11 73.6 44 75.0
Atru.chr7.1632 Acer truncatum HOM05D001717 ORTHO05D007217 1.4e-11 73.2 52 65.4
Cpa.g.sc28.134 Carica papaya HOM05D001717 ORTHO05D007217 3.2e-11 72.0 45 68.9
Nitab4.5_0002824g0130 Nicotiana tabacum HOM05D001717 ORTHO05D007217 3.2e-11 72.0 45 71.1
Hma1.2p1_0672F.1_g200970 Hydrangea macrophylla HOM05D001717 ORTHO05D007217 4.2e-11 71.6 45 68.9
SGA_v2.0_scaffold21G09418 Striga asiatica HOM05D001717 ORTHO05D007217 4.2e-11 71.6 47 72.3
Dinv36788 Davidia involucrata HOM05D001717 ORTHO05D007217 5.4e-11 71.2 45 68.9
Medtr2g040060 Medicago truncatula HOM05D001717 ORTHO05D007217 7.1e-11 70.9 45 73.3
PGSC0003DMG400000333 Solanum tuberosum HOM05D001717 ORTHO05D007217 7.1e-11 70.9 45 71.1
arahy.Tifrunner.gnm1.ann1.1PI95V Arachis hypogaea HOM05D001717 ORTHO05D007217 9.3e-11 70.5 45 68.9
arahy.Tifrunner.gnm1.ann1.HJX0E8 Arachis hypogaea HOM05D001717 ORTHO05D007217 9.3e-11 70.5 45 68.9
Dinv42343 Davidia involucrata HOM05D001717 ORTHO05D007217 9.3e-11 70.5 50 62.0
Migut.L01523 Erythranthe guttata HOM05D001717 ORTHO05D007217 9.3e-11 70.5 47 74.5
Manes.16G099600 Manihot esculenta HOM05D001717 ORTHO05D007217 9.3e-11 70.5 45 62.2
Actinidia29912 Actinidia chinensis HOM05D001717 ORTHO05D007217 1.2e-10 70.1 45 66.7
Glyma.09G066200 Glycine max HOM05D001717 ORTHO05D007217 1.2e-10 70.1 52 63.5
Rhsim03G0231100 Rhododendron simsii HOM05D001717 ORTHO05D007217 1.2e-10 70.1 45 71.1
Oeu051301.2 Olea europaea HOM05D001717 ORTHO05D007217 1.6e-10 69.7 54 63.0
Solyc12g008980.3 Solanum lycopersicum HOM05D001717 ORTHO05D007217 1.6e-10 69.7 45 68.9
Sopen12g003910 Solanum pennellii HOM05D001717 ORTHO05D007217 1.6e-10 69.7 45 68.9
CAN.G1583.7 Capsicum annuum HOM05D001717 ORTHO05D007217 2.1e-10 69.3 45 68.9
SalBow1G4112 Salvia bowleyana HOM05D001717 ORTHO05D007217 2.1e-10 69.3 52 65.4
VMungo1309G2997 Vigna mungo HOM05D001717 ORTHO05D007217 2.1e-10 69.3 52 61.5
ClCG11G001670 Citrullus lanatus HOM05D001717 ORTHO05D007217 2.7e-10 68.9 45 66.7
MELO3C004633.2 Cucumis melo HOM05D001717 ORTHO05D007217 2.7e-10 68.9 45 66.7
CsaV3_2G001370 Cucumis sativus L. HOM05D001717 ORTHO05D007217 2.7e-10 68.9 45 66.7
Hund08694 Selenicereus undatus HOM05D001717 ORTHO05D007217 2.7e-10 68.9 43 69.8
Gohir.D07G012200 Gossypium hirsutum HOM05D001717 ORTHO05D007217 3.5e-10 68.6 44 72.7
Gorai.001G012900 Gossypium raimondii HOM05D001717 ORTHO05D007217 3.5e-10 68.6 44 72.7
Nn8g38788 Nelumbo nucifera HOM05D001717 ORTHO05D007217 4.6e-10 68.2 49 57.1
TPR.G29491 Trifolium pratense HOM05D001717 ORTHO05D007217 4.6e-10 68.2 45 71.1
Glyma.15G172200 Glycine max HOM05D001717 ORTHO05D007217 6.0e-10 67.8 52 61.5
Psat1g140400 Pisum sativum HOM05D001717 ORTHO05D007217 6.0e-10 67.8 45 71.1
MSTRG.26445 Avicennia marina HOM05D001717 ORTHO05D007217 7.8e-10 67.4 52 63.5
CSS0031227 Camellia sinensis var. sinensis HOM05D001717 ORTHO05D007217 7.8e-10 67.4 45 66.7
Ah.09g228040 Amaranthus hybridus HOM05D001717 ORTHO05D007217 1.0e-09 67.0 43 67.4
Gohir.A07G012400 Gossypium hirsutum HOM05D001717 ORTHO05D007217 1.3e-09 66.6 44 70.5
Nitab4.5_0002642g0140 Nicotiana tabacum HOM05D001717 ORTHO05D007217 1.3e-09 66.6 37 75.7
Phvul.009G230300 Phaseolus vulgaris HOM05D001717 ORTHO05D007217 1.3e-09 66.6 52 59.6
THA.LOC104811752 Tarenaya hassleriana HOM05D001717 ORTHO05D007217 1.3e-09 66.6 44 65.9
Sed0013443 Sechium edule HOM05D001717 ORTHO05D007217 2.3e-09 65.9 45 66.7
CANSAT37G0002 Cannabis sativa HOM05D001717 ORTHO05D007217 3.0e-09 65.5 45 64.4
FAN23G2221 Fragaria x ananassa HOM05D001717 ORTHO05D007217 3.0e-09 65.5 56 58.9
Lj4A290G39 Lonicera japonica HOM05D001717 ORTHO05D007217 3.0e-09 65.5 43 72.1
Lj6g0021332 Lotus japonicus HOM05D001717 ORTHO05D007217 3.0e-09 65.5 45 64.4
Lalb_Chr08g0232411 Lupinus albus HOM05D001717 ORTHO05D007217 3.0e-09 65.5 45 64.4
TAR626G1800 Trochodendron aralioides HOM05D001717 ORTHO05D007217 3.0e-09 65.5 49 55.1
Ca_13129_v3 Cicer arietinum L. HOM05D001717 ORTHO05D007217 3.9e-09 65.1 45 64.4
FAN26G1636 Fragaria x ananassa HOM05D001717 ORTHO05D007217 5.1e-09 64.7 54 59.3
FAN26G2680 Fragaria x ananassa HOM05D001717 ORTHO05D007217 5.1e-09 64.7 54 59.3
TWI34G1733 Tripterygium wilfordii HOM05D001717 ORTHO05D007217 6.6e-09 64.3 45 66.7
Cfa003054 Carpinus fangiana HOM05D001717 ORTHO05D007217 1.1e-08 63.5 47 66.0
FAN28G1754 Fragaria x ananassa HOM05D001717 ORTHO05D007217 1.5e-08 63.2 54 57.4
Eucgr.C03415 Eucalyptus grandis HOM05D001717 ORTHO05D007217 3.3e-08 62.0 50 56.0
unitig_899.g15176 Utricularia gibba HOM05D001717 ORTHO05D007217 3.3e-08 62.0 47 66.0
CiPaw.04G147700 Carya illinoinensis HOM05D001717 ORTHO05D007217 4.3e-08 61.6 45 71.1
Haze_25942 Corylus avellana HOM05D001717 ORTHO05D007217 4.3e-08 61.6 47 63.8
Prupe.7G205600 Prunus persica HOM05D001717 ORTHO05D007217 4.3e-08 61.6 41 68.3
FvH4_1g07950 Fragaria vesca HOM05D001717 ORTHO05D007217 5.6e-08 61.2 48 58.3
FAN19G0647 Fragaria x ananassa HOM05D001717 ORTHO05D007217 5.6e-08 61.2 48 58.3
RcHm_v2.0_Chr2g0093831 Rosa chinensis HOM05D001717 ORTHO05D007217 5.6e-08 61.2 48 58.3
EL10Ac8g19172 Beta vulgaris HOM05D001717 ORTHO05D007217 1.3e-07 60.1 43 60.5
DCAR_028276 Daucus carota HOM05D001717 ORTHO05D007217 2.1e-07 59.3 42 71.4
QL02p062060 Quercus lobata HOM05D001717 ORTHO05D007217 2.1e-07 59.3 47 61.7
Ciclev10008410m.g Citrus clementina HOM05D001717 ORTHO05D007217 2.8e-07 58.9 45 64.4
Cc06_g11680 Coffea canephora HOM05D001717 ORTHO05D007217 4.8e-07 58.2 46 56.5
Sc18g0002290 Simmondsia chinensis HOM05D001717 ORTHO05D007217 4.8e-07 58.2 45 57.8
Aqoxy7G01155 Aquilegia oxysepala HOM05D001717 ORTHO05D007217 1.1e-06 57.0 41 61.0
Sabra06G0116300 Salix brachista HOM05D001717 ORTHO05D007217 1.8e-06 56.2 44 63.6
PGR044G0216 Punica granatum HOM05D001717 ORTHO05D007217 5.3e-06 54.7 45 55.6


User provided reference genes

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