Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09190 Brassica carinata HOM05D000732 ORTHO05D013253 6.5e-94 347.4 181 100.0
C04p39860 Brassica napus HOM05D038259 ORTHO05D013253 5.3e-56 221.5 119 99.2
A09p41030 Brassica napus HOM05D000732 ORTHO05D007225 5.9e-39 164.9 206 48.1
BcaC07g39214 Brassica carinata HOM05D000732 ORTHO05D007225 1.0e-38 164.1 209 48.8
BcaB03g11954 Brassica carinata HOM05D000732 ORTHO05D007225 2.3e-38 162.9 210 48.1
C08p22100 Brassica napus HOM05D000732 ORTHO05D007225 3.9e-38 162.2 213 47.9
BolC8t49855H Brassica oleracea HOM05D000732 ORTHO05D007225 3.9e-38 162.2 213 47.9
BraA09t39596Z Brassica rapa HOM05D000732 ORTHO05D007225 1.5e-37 160.2 206 47.1
C05p22970 Brassica napus HOM05D000732 ORTHO05D007225 3.3e-37 159.1 208 47.1
BcaC05g26291 Brassica carinata HOM05D000732 ORTHO05D007225 4.3e-37 158.7 207 47.3
BolC5t30996H Brassica oleracea HOM05D000732 ORTHO05D007225 4.3e-37 158.7 207 47.3
Carub.0001s2330 Capsella rubella HOM05D000732 ORTHO05D007225 1.2e-36 157.1 208 46.6
Thhalv10007309m.g Eutrema salsugineum HOM05D000732 ORTHO05D007225 1.6e-36 156.8 210 44.8
AT1G23790 Arabidopsis thaliana HOM05D000732 ORTHO05D007225 6.1e-36 154.8 203 45.8
BcaC02g09354 Brassica carinata HOM05D000732 ORTHO05D013253 2.6e-34 149.4 149 59.7
AL1G37550 Arabidopsis lyrata HOM05D000732 ORTHO05D007225 4.4e-34 148.7 207 43.5
A08p28020 Brassica napus HOM05D000732 ORTHO05D007225 4.4e-34 148.7 215 44.2
BraA08t34732Z Brassica rapa HOM05D000732 ORTHO05D007225 4.4e-34 148.7 215 44.2
CARHR024210 Cardamine hirsuta HOM05D000732 ORTHO05D007225 1.3e-33 147.1 193 46.6
C04p39850 Brassica napus HOM05D000732 ORTHO05D013253 1.0e-30 137.5 78 85.9
Aa31LG7G7670 Aethionema arabicum HOM05D000732 ORTHO05D007225 5.0e-30 135.2 205 40.5
Sp5g25460 Schrenkiella parvula HOM05D000732 ORTHO05D007225 2.6e-26 122.9 215 37.2
AL2G29650 Arabidopsis lyrata HOM05D000732 ORTHO05D007225 1.3e-25 120.6 219 35.6
C07p09680 Brassica napus HOM05D000732 ORTHO05D013253 1.1e-24 117.5 78 75.6
BolC7t41407H Brassica oleracea HOM05D000732 ORTHO05D013253 1.1e-24 117.5 63 88.9
Carub.0002s1703 Capsella rubella HOM05D000732 ORTHO05D007225 1.1e-24 117.5 232 36.2
AT1G70340 Arabidopsis thaliana HOM05D000732 ORTHO05D007225 1.4e-24 117.1 202 36.1
CARHR063520 Cardamine hirsuta HOM05D000732 ORTHO05D007225 2.4e-24 116.3 209 35.9
THA.LOC104808945 Tarenaya hassleriana HOM05D000732 ORTHO05D007225 3.2e-24 115.9 201 38.8
A04p20940 Brassica napus HOM05D000732 ORTHO05D013253 5.4e-24 115.2 63 87.3
Oeu056733.2 Olea europaea HOM05D000732 ORTHO05D007225 1.7e-22 110.2 196 35.7
Aa31LG4G10600 Aethionema arabicum HOM05D000732 ORTHO05D007225 1.9e-21 106.7 208 35.1
A10p33080 Brassica napus HOM05D000732 ORTHO05D013253 1.6e-20 103.6 72 72.2
SalBow2G2423 Salvia bowleyana HOM05D000732 ORTHO05D007225 2.8e-20 102.8 212 34.4
Cpa.g.sc69.30 Carica papaya HOM05D000732 ORTHO05D007225 3.6e-20 102.4 244 34.0
AUR62005377 Chenopodium quinoa HOM05D000732 ORTHO05D007225 3.6e-20 102.4 243 32.5
Ciclev10031068m.g Citrus clementina HOM05D000732 ORTHO05D007225 3.6e-20 102.4 238 33.2
Eucgr.B03344 Eucalyptus grandis HOM05D000732 ORTHO05D007225 1.1e-19 100.9 238 32.8
AUR62014040 Chenopodium quinoa HOM05D000732 ORTHO05D007225 1.4e-19 100.5 242 32.2
QL08p001512 Quercus lobata HOM05D000732 ORTHO05D007225 1.8e-19 100.1 246 30.1
BcaC08g42882 Brassica carinata HOM05D000732 ORTHO05D027335 3.1e-19 99.4 55 92.7
Ah.02g129920 Amaranthus hybridus HOM05D000732 ORTHO05D007225 6.8e-19 98.2 233 31.3
BcaC03g17270 Brassica carinata HOM05D000732 ORTHO05D013253 6.8e-19 98.2 78 64.1
EL10Ac6g13672 Beta vulgaris HOM05D000732 ORTHO05D007225 8.9e-19 97.8 247 32.0
FAN22G0662 Fragaria x ananassa HOM05D000732 ORTHO05D007225 8.9e-19 97.8 231 33.3
Dinv24859 Davidia involucrata HOM05D000732 ORTHO05D007225 1.2e-18 97.4 232 31.5
RcHm_v2.0_Chr4g0443831 Rosa chinensis HOM05D000732 ORTHO05D007225 1.5e-18 97.1 253 33.2
Hund25346 Selenicereus undatus HOM05D000732 ORTHO05D007225 2.0e-18 96.7 242 31.4
C06p00980 Brassica napus HOM05D000732 ORTHO05D027335 2.6e-18 96.3 55 90.9
BraA01t03419Z Brassica rapa HOM05D000732 ORTHO05D027335 3.4e-18 95.9 55 89.1
Haze_12177 Corylus avellana HOM05D000732 ORTHO05D007225 3.4e-18 95.9 247 32.0
DCAR_031102 Daucus carota HOM05D000732 ORTHO05D007225 3.4e-18 95.9 237 33.8
arahy.Tifrunner.gnm1.ann1.S6CLIJ Arachis hypogaea HOM05D000732 ORTHO05D007225 4.4e-18 95.5 243 30.5
arahy.Tifrunner.gnm1.ann1.V0668Y Arachis hypogaea HOM05D000732 ORTHO05D007225 4.4e-18 95.5 243 30.9
Glyma.01G031300 Glycine max HOM05D000732 ORTHO05D007225 4.4e-18 95.5 245 30.2
VMungo1215G1082 Vigna mungo HOM05D000732 ORTHO05D007225 5.8e-18 95.1 247 30.4
FvH4_4g34410 Fragaria vesca HOM05D000732 ORTHO05D007225 1.3e-17 94.0 244 32.0
FAN07G1798 Fragaria x ananassa HOM05D000732 ORTHO05D007225 1.3e-17 94.0 244 32.0
FAN12G2269 Fragaria x ananassa HOM05D000732 ORTHO05D007225 1.3e-17 94.0 244 32.0
TAR629G1031 Trochodendron aralioides HOM05D000732 ORTHO05D007225 1.3e-17 94.0 244 29.5
GSVIVG01020241001 Vitis vinifera HOM05D000732 ORTHO05D007225 1.3e-17 94.0 255 31.0
Cfa009143 Carpinus fangiana HOM05D000732 ORTHO05D007225 1.7e-17 93.6 263 31.6
Dinv15302 Davidia involucrata HOM05D000732 ORTHO05D007225 1.7e-17 93.6 246 30.1
Lalb_Chr05g0216901 Lupinus albus HOM05D000732 ORTHO05D007225 1.7e-17 93.6 248 29.4
BcaC05g24917 Brassica carinata HOM05D000732 ORTHO05D013253 2.2e-17 93.2 63 69.8
Glyma.02G034500 Glycine max HOM05D000732 ORTHO05D007225 2.2e-17 93.2 245 29.8
Duzib268G1676 Durio zibethinus HOM05D000732 ORTHO05D007225 2.9e-17 92.8 265 30.2
FAN17G2219 Fragaria x ananassa HOM05D000732 ORTHO05D007225 2.9e-17 92.8 244 31.6
Sed0004489 Sechium edule HOM05D000732 ORTHO05D007225 2.9e-17 92.8 219 32.9
Ca_04598_v3 Cicer arietinum L. HOM05D000732 ORTHO05D007225 4.9e-17 92.0 235 30.2
Medtr5g034370 Medicago truncatula HOM05D000732 ORTHO05D007225 4.9e-17 92.0 235 30.6
Lj3C1052T10 Lonicera japonica HOM05D000732 ORTHO05D007225 6.4e-17 91.7 231 32.5
Nn4g22799 Nelumbo nucifera HOM05D000732 ORTHO05D007225 8.3e-17 91.3 243 29.2
TPR.G13569 Trifolium pratense HOM05D000732 ORTHO05D007225 8.3e-17 91.3 233 31.8
TAR371G0352 Trochodendron aralioides HOM05D000732 ORTHO05D007225 8.3e-17 91.3 242 28.1
COL.COLO4_36966 Corchorus olitorius HOM05D000732 ORTHO05D007225 1.1e-16 90.9 244 30.3
Manes.12G029000 Manihot esculenta HOM05D000732 ORTHO05D007225 1.4e-16 90.5 247 27.5
Gohir.D02G162800 Gossypium hirsutum HOM05D000732 ORTHO05D007225 1.9e-16 90.1 216 31.9
Gorai.005G182800 Gossypium raimondii HOM05D000732 ORTHO05D007225 1.9e-16 90.1 216 31.9
vmacro16252 Vaccinium macrocarpon HOM05D000732 ORTHO05D007225 1.9e-16 90.1 237 30.8
Actinidia15046 Actinidia chinensis HOM05D000732 ORTHO05D007225 3.2e-16 89.4 232 28.4
Thecc.02G248500 Theobroma cacao HOM05D000732 ORTHO05D007225 3.2e-16 89.4 257 29.6
MSTRG.7899 Avicennia marina HOM05D000732 ORTHO05D007225 4.1e-16 89.0 267 29.2
Rhsim12G0120000 Rhododendron simsii HOM05D000732 ORTHO05D007225 4.1e-16 89.0 235 28.1
Duzib248G1152 Durio zibethinus HOM05D000732 ORTHO05D007225 7.1e-16 88.2 257 28.8
CSS0045437 Camellia sinensis var. sinensis HOM05D000732 ORTHO05D007225 9.2e-16 87.8 245 29.4
TWI75G0496 Tripterygium wilfordii HOM05D000732 ORTHO05D007225 9.2e-16 87.8 248 30.2
Gohir.A03G140000 Gossypium hirsutum HOM05D000732 ORTHO05D007225 1.2e-15 87.4 216 31.5
TWI36G1131 Tripterygium wilfordii HOM05D000732 ORTHO05D007225 1.6e-15 87.0 252 29.0
TAR680G0005 Trochodendron aralioides HOM05D000732 ORTHO05D007225 2.1e-15 86.7 256 26.6
TAR680G0006 Trochodendron aralioides HOM05D000732 ORTHO05D007225 2.1e-15 86.7 256 26.6
Cc11_g14660 Coffea canephora HOM05D000732 ORTHO05D007225 2.7e-15 86.3 252 27.4
BolC6t35234H Brassica oleracea HOM05D000732 ORTHO05D027335 3.5e-15 85.9 49 89.8
Phvul.002G071800 Phaseolus vulgaris HOM05D000732 ORTHO05D007225 3.5e-15 85.9 248 29.4
Psat2g106200 Pisum sativum HOM05D000732 ORTHO05D007225 3.5e-15 85.9 235 31.1
CiPaw.05G150800 Carya illinoinensis HOM05D000732 ORTHO05D007225 4.6e-15 85.5 246 29.7
ECA233G2480 Erigeron canadensis HOM05D000732 ORTHO05D007225 4.6e-15 85.5 219 30.6
Migut.L01414 Erythranthe guttata HOM05D000732 ORTHO05D007225 4.6e-15 85.5 242 31.4
Lsat_1_v5_gn_8_157120 Lactuca sativa HOM05D000732 ORTHO05D007225 4.6e-15 85.5 212 30.7
Potri.010G038600 Populus trichocarpa HOM05D000732 ORTHO05D007225 6.0e-15 85.1 240 29.6
MD16G1092400 Malus domestica HOM05D000732 ORTHO05D007225 1.0e-14 84.3 266 27.1
Lj2g0021682 Lotus japonicus HOM05D000732 ORTHO05D007225 1.3e-14 84.0 253 28.5
Prupe.1G254000 Prunus persica HOM05D000732 ORTHO05D007225 1.7e-14 83.6 248 27.8
QL08p001505 Quercus lobata HOM05D000732 ORTHO05D013253 3.0e-14 82.8 62 59.7
SGA_v2.0_scaffold165G38244 Striga asiatica HOM05D000732 ORTHO05D007225 3.0e-14 82.8 256 28.9
MD13G1091800 Malus domestica HOM05D000732 ORTHO05D007225 6.6e-14 81.6 266 26.7
Potri.008G192300 Populus trichocarpa HOM05D000732 ORTHO05D007225 8.6e-14 81.3 257 28.4
Hund05994 Selenicereus undatus HOM05D000732 ORTHO05D007225 1.1e-13 80.9 77 50.6
Hma1.2p1_0867F.1_g230180 Hydrangea macrophylla HOM05D000732 ORTHO05D007225 1.5e-13 80.5 232 31.0
unitig_25.g30566 Utricularia gibba HOM05D000732 ORTHO05D007225 1.5e-13 80.5 222 28.8
ECA234G3466 Erigeron canadensis HOM05D000732 ORTHO05D007225 2.5e-13 79.7 219 29.7
Medtr5g034380 Medicago truncatula HOM05D000732 ORTHO05D013253 4.3e-13 79.0 124 37.9
unitig_22.g6465 Utricularia gibba HOM05D000732 ORTHO05D007225 5.6e-13 78.6 222 28.4
CANSAT01G2807 Cannabis sativa HOM05D000732 ORTHO05D007225 7.3e-13 78.2 258 27.9
HanXRQChr17g0569811 Helianthus annuus HOM05D000732 ORTHO05D007225 7.3e-13 78.2 170 31.2
Sabra08G0145800 Salix brachista HOM05D000732 ORTHO05D007225 7.3e-13 78.2 258 26.0
Nitab4.5_0000113g0290 Nicotiana tabacum HOM05D000732 ORTHO05D007225 9.6e-13 77.8 238 28.2
PGR102G0434 Punica granatum HOM05D000732 ORTHO05D007225 9.6e-13 77.8 242 30.2
Nitab4.5_0002494g0010 Nicotiana tabacum HOM05D000732 ORTHO05D007225 1.6e-12 77.0 255 27.8
CAN.G388.57 Capsicum annuum HOM05D000732 ORTHO05D007225 2.1e-12 76.6 239 25.9
Peaxi162Scf00338g00223 Petunia axillaris HOM05D000732 ORTHO05D007225 2.8e-12 76.3 235 26.8
Solyc05g005580.3 Solanum lycopersicum HOM05D000732 ORTHO05D007225 1.1e-11 74.3 236 26.7
Sopen05g001590 Solanum pennellii HOM05D000392 ORTHO05D000001 1.1e-11 74.3 236 26.7
RhsimUnG0193300 Rhododendron simsii HOM05D000732 ORTHO05D007225 1.4e-11 73.9 235 26.8
Sabra10G0027600 Salix brachista HOM05D000732 ORTHO05D007225 3.1e-11 72.8 58 58.6
ClCG08G018070 Citrullus lanatus HOM05D000732 ORTHO05D007225 5.2e-11 72.0 56 55.4
ATR0730G107 Amborella trichopoda HOM05D000732 ORTHO05D007225 6.8e-11 71.6 264 24.6
Aqoxy3G01008 Aquilegia oxysepala HOM05D000732 ORTHO05D007225 8.9e-11 71.2 249 26.9
MBI16_g26454_MAGBIO Magnolia biondii HOM05D000732 ORTHO05D007225 8.9e-11 71.2 241 27.4
CsaV3_2G024570 Cucumis sativus L. HOM05D000732 ORTHO05D007225 3.4e-10 69.3 56 50.0
HanXRQChr08g0208801 Helianthus annuus HOM05D000732 ORTHO05D007225 4.4e-10 68.9 213 27.2
Lsat_1_v5_gn_4_5860 Lactuca sativa HOM05D000732 ORTHO05D007225 1.3e-09 67.4 179 30.7
PSO063G5642 Papaver somniferum HOM05D000732 ORTHO05D007225 2.9e-09 66.2 238 23.9
MELO3C010661.2 Cucumis melo HOM05D000732 ORTHO05D007225 3.8e-09 65.9 53 49.1
PSO832G2552 Papaver somniferum HOM05D000732 ORTHO05D007225 1.1e-08 64.3 245 23.3
Nitab4.5_0004308g0060 Nicotiana tabacum HOM05D000732 ORTHO05D007225 4.2e-08 62.4 239 23.0
BolC2t11300H Brassica oleracea HOM05D000732 ORTHO05D013253 5.4e-08 62.0 55 50.9
Sc11g0001190 Simmondsia chinensis HOM05D000732 ORTHO05D007225 5.4e-08 62.0 63 52.4
Actinidia13509 Actinidia chinensis HOM05D000732 ORTHO05D007225 7.1e-08 61.6 80 41.2
Zm00001eb126560 Zea mays HOM05D000732 ORTHO05D007225 9.3e-08 61.2 241 23.2
SHI27223 Sapria himalayana HOM05D000732 ORTHO05D007225 1.6e-07 60.5 72 44.4
PGSC0003DMG400030993 Solanum tuberosum HOM05D000732 ORTHO05D007225 3.9e-06 55.8 253 24.1
BolC2t11299H Brassica oleracea HOM05D038259 ORTHO05D040081 6.6e-06 55.1 45 73.3
C02p52150 Brassica napus HOM05D038259 ORTHO05D040081 8.7e-06 54.7 49 69.4
Lsat_1_v5_gn_1_5940 Lactuca sativa HOM05D005655 ORTHO05D007386 8.7e-06 54.7 139 30.2


User provided reference genes

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