Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08695 Brassica carinata HOM05D004170 ORTHO05D016022 1.5e-39 165.6 80 100.0
A01p06930 Brassica napus HOM05D004170 ORTHO05D016022 6.7e-35 150.2 80 92.5
BraA06t26553Z Brassica rapa HOM05D004170 ORTHO05D016022 6.7e-35 150.2 80 92.5
C06p00790 Brassica napus HOM05D004170 ORTHO05D016022 1.9e-34 148.7 80 91.2
BcaNung01479 Brassica carinata HOM05D004170 ORTHO05D016022 1.7e-30 135.6 104 69.2
BolC2t11974H Brassica oleracea HOM05D004170 ORTHO05D016022 2.5e-29 131.7 115 63.5
BraA01t00641Z Brassica rapa HOM05D004170 ORTHO05D016022 3.6e-28 127.9 119 60.5
BraA01t01167Z Brassica rapa HOM05D004170 ORTHO05D016022 3.6e-28 127.9 119 60.5
BraA03t12690Z Brassica rapa HOM05D004170 ORTHO05D016022 6.1e-28 127.1 119 59.7
BcaC03g15410 Brassica carinata HOM05D004170 ORTHO05D016022 2.8e-25 118.2 115 60.0
C04p51630 Brassica napus HOM05D004170 ORTHO05D005976 1.4e-19 99.4 49 93.9
BolC4t26743H Brassica oleracea HOM05D004170 ORTHO05D005976 1.4e-19 99.4 49 93.9
BcaC07g37614 Brassica carinata HOM05D004170 ORTHO05D095228 5.7e-18 94.0 105 54.3
BcaC01g05235 Brassica carinata HOM05D004170 ORTHO05D005976 7.4e-18 93.6 45 95.6
BcaC02g07186 Brassica carinata HOM05D004170 ORTHO05D005976 7.4e-18 93.6 45 95.6
A03p24220 Brassica napus HOM05D004170 ORTHO05D005976 7.4e-18 93.6 45 95.6
C03p28850 Brassica napus HOM05D004170 ORTHO05D005976 7.4e-18 93.6 45 95.6
C04p70380 Brassica napus HOM05D004170 ORTHO05D005976 7.4e-18 93.6 45 95.6
BolC3t15244H Brassica oleracea HOM05D004170 ORTHO05D005976 7.4e-18 93.6 45 95.6
BolC4t28541H Brassica oleracea HOM05D004170 ORTHO05D005976 7.4e-18 93.6 45 95.6
BraA03t11631Z Brassica rapa HOM05D004170 ORTHO05D005976 7.4e-18 93.6 45 95.6
Sp4g25470 Schrenkiella parvula HOM05D004170 ORTHO05D005976 1.4e-16 89.4 45 91.1
BcaB06g29308 Brassica carinata HOM05D004170 ORTHO05D005976 1.8e-16 89.0 44 93.2
BcaC02g07185 Brassica carinata HOM05D004170 ORTHO05D005976 1.8e-16 89.0 44 93.2
EL10Ac3g06299 Beta vulgaris HOM05D004170 ORTHO05D005976 2.4e-16 88.6 45 91.1
Thhalv10001559m.g Eutrema salsugineum HOM05D004170 ORTHO05D005976 4.1e-16 87.8 45 88.9
BolC3t16254H Brassica oleracea HOM05D004170 ORTHO05D005976 5.3e-16 87.4 49 83.7
AUR62030020 Chenopodium quinoa HOM05D004170 ORTHO05D005976 5.3e-16 87.4 45 88.9
Ah.07g204090 Amaranthus hybridus HOM05D004170 ORTHO05D005976 7.0e-16 87.0 45 88.9
AL4G42050 Arabidopsis lyrata HOM05D004170 ORTHO05D005976 7.0e-16 87.0 62 66.1
AT2G43370 Arabidopsis thaliana HOM05D004170 ORTHO05D005976 7.0e-16 87.0 45 88.9
BcaC03g15872 Brassica carinata HOM05D004170 ORTHO05D005976 1.6e-15 85.9 44 88.6
C05p23560 Brassica napus HOM05D004170 ORTHO05D005976 1.6e-15 85.9 44 88.6
Carub.0004s2583 Capsella rubella HOM05D004170 ORTHO05D005976 1.6e-15 85.9 45 86.7
AUR62002598 Chenopodium quinoa HOM05D004170 ORTHO05D005976 1.6e-15 85.9 45 88.9
Eucgr.L01383 Eucalyptus grandis HOM05D004170 ORTHO05D005976 1.6e-15 85.9 45 86.7
C02p36260 Brassica napus HOM05D004170 ORTHO05D005976 2.0e-15 85.5 44 88.6
Aa31LG1G25070 Aethionema arabicum HOM05D004170 ORTHO05D000604 2.6e-15 85.1 45 84.4
Manes.04G040300 Manihot esculenta HOM05D004170 ORTHO05D005976 3.5e-15 84.7 45 84.4
Actinidia39857 Actinidia chinensis HOM05D004170 ORTHO05D005976 4.5e-15 84.3 45 84.4
BcaC02g08533 Brassica carinata HOM05D004170 ORTHO05D005976 4.5e-15 84.3 79 64.6
Migut.O00710 Erythranthe guttata HOM05D004170 ORTHO05D005976 4.5e-15 84.3 45 84.4
Lj8C30T5 Lonicera japonica HOM05D004170 ORTHO05D005976 4.5e-15 84.3 45 82.2
PGR142G1978 Punica granatum HOM05D004170 ORTHO05D005976 4.5e-15 84.3 45 84.4
Sc25g0001640 Simmondsia chinensis HOM05D004170 ORTHO05D005976 5.9e-15 84.0 45 84.4
Thecc.05G003100 Theobroma cacao HOM05D004170 ORTHO05D005976 5.9e-15 84.0 45 82.2
Ciclev10020999m.g Citrus clementina HOM05D004170 ORTHO05D005976 7.7e-15 83.6 45 82.2
Ciclev10021004m.g Citrus clementina HOM05D004170 ORTHO05D005976 7.7e-15 83.6 45 82.2
Migut.N02002 Erythranthe guttata HOM05D004170 ORTHO05D005976 7.7e-15 83.6 45 84.4
Hma1.2p1_2974F.1_g331120 Hydrangea macrophylla HOM05D004170 ORTHO05D005976 7.7e-15 83.6 45 84.4
Cc03_g15010 Coffea canephora HOM05D004170 ORTHO05D005976 1.0e-14 83.2 45 82.2
MBI08_g01805_MAGBIO Magnolia biondii HOM05D004170 ORTHO05D005976 1.0e-14 83.2 45 84.4
Cpa.g.sc2713.1 Carica papaya HOM05D004170 ORTHO05D005976 1.3e-14 82.8 50 76.0
TAR633G2752 Trochodendron aralioides HOM05D004170 ORTHO05D005976 1.3e-14 82.8 45 84.4
GSVIVG01010733001 Vitis vinifera HOM05D004170 ORTHO05D005976 1.3e-14 82.8 45 84.4
Os09g0513700 Oryza sativa ssp. japonica HOM05D004170 ORTHO05D005976 1.7e-14 82.4 45 80.0
Prupe.1G172700 Prunus persica HOM05D004170 ORTHO05D005976 1.7e-14 82.4 45 80.0
Rhsim02G0075900 Rhododendron simsii HOM05D004170 ORTHO05D005976 1.7e-14 82.4 45 80.0
MSTRG.27998 Avicennia marina HOM05D004170 ORTHO05D005976 2.2e-14 82.0 45 80.0
Cfa015770 Carpinus fangiana HOM05D004170 ORTHO05D005976 2.9e-14 81.6 45 82.2
Dinv44240 Davidia involucrata HOM05D004170 ORTHO05D005976 2.9e-14 81.6 45 82.2
ECA248G2970 Erigeron canadensis HOM05D000001 ORTHO05D009083 2.9e-14 81.6 45 82.2
arahy.Tifrunner.gnm1.ann1.GESE75 Arachis hypogaea HOM05D004170 ORTHO05D005976 3.8e-14 81.3 45 82.2
arahy.Tifrunner.gnm1.ann1.VAWH7V Arachis hypogaea HOM05D004170 ORTHO05D005976 3.8e-14 81.3 45 82.2
RcHm_v2.0_Chr4g0412221 Rosa chinensis HOM05D004170 ORTHO05D005976 3.8e-14 81.3 45 80.0
Sabra17G0021000 Salix brachista HOM05D004170 ORTHO05D005976 3.8e-14 81.3 45 77.8
unitig_26.g9981 Utricularia gibba HOM05D004170 ORTHO05D005976 5.0e-14 80.9 45 82.2
COL.COLO4_14420 Corchorus olitorius HOM05D004170 ORTHO05D005976 8.5e-14 80.1 45 80.0
THA.LOC104802303 Tarenaya hassleriana HOM05D004170 ORTHO05D005976 8.5e-14 80.1 45 80.0
Duzib093G1865 Durio zibethinus HOM05D004170 ORTHO05D005976 1.1e-13 79.7 45 77.8
FAN22G0324 Fragaria x ananassa HOM05D004170 ORTHO05D005976 1.1e-13 79.7 45 77.8
Glyma.08G366200 Glycine max HOM05D004170 ORTHO05D005976 1.1e-13 79.7 45 80.0
Glyma.18G296100 Glycine max HOM05D004170 ORTHO05D005976 1.1e-13 79.7 45 80.0
MD03G1203000 Malus domestica HOM05D004170 ORTHO05D005976 1.1e-13 79.7 45 77.8
RcHm_v2.0_Chr4g0412301 Rosa chinensis HOM05D004170 ORTHO05D005976 1.1e-13 79.7 45 77.8
Sed0021283 Sechium edule HOM05D004170 ORTHO05D005976 1.1e-13 79.7 45 80.0
SEGI_04703 Sequoiadendron giganteum HOM05D004170 ORTHO05D005976 1.5e-13 79.3 49 71.4
Zm00001eb318310 Zea mays HOM05D004170 ORTHO05D005976 1.5e-13 79.3 45 77.8
CANSAT78G0391 Cannabis sativa HOM05D004170 ORTHO05D005976 1.9e-13 79.0 45 80.0
HanXRQChr16g0502641 Helianthus annuus HOM05D004170 ORTHO05D005976 1.9e-13 79.0 45 80.0
PSO675G5023 Papaver somniferum HOM05D004170 ORTHO05D005976 1.9e-13 79.0 45 77.8
TWI12G1326 Tripterygium wilfordii HOM05D004170 ORTHO05D005976 1.9e-13 79.0 44 81.8
vmacro15642 Vaccinium macrocarpon HOM05D004170 ORTHO05D005976 1.9e-13 79.0 45 77.8
BolC5t31068H Brassica oleracea HOM05D004170 ORTHO05D005976 2.5e-13 78.6 44 86.4
ClCG05G007160 Citrullus lanatus HOM05D004170 ORTHO05D005976 2.5e-13 78.6 44 81.8
MELO3C006785.2 Cucumis melo HOM05D004170 ORTHO05D005976 2.5e-13 78.6 44 81.8
FvH4_4g12800 Fragaria vesca HOM05D004170 ORTHO05D005976 2.5e-13 78.6 45 77.8
FAN12G0511 Fragaria x ananassa HOM05D004170 ORTHO05D005976 2.5e-13 78.6 45 77.8
MD04G1022600 Malus domestica HOM05D004170 ORTHO05D005976 2.5e-13 78.6 45 75.6
Nn6g32161 Nelumbo nucifera HOM05D004170 ORTHO05D005976 2.5e-13 78.6 45 82.2
Potri.017G033400 Populus trichocarpa HOM05D004170 ORTHO05D005976 2.5e-13 78.6 45 77.8
Aqoxy2G04112 Aquilegia oxysepala HOM05D004170 ORTHO05D005976 4.2e-13 77.8 45 75.6
CSS0008998 Camellia sinensis var. sinensis HOM05D004170 ORTHO05D005976 4.2e-13 77.8 45 77.8
CiPaw.01G102400 Carya illinoinensis HOM05D004170 ORTHO05D005976 4.2e-13 77.8 45 80.0
Medtr7g082150 Medicago truncatula HOM05D004170 ORTHO05D005976 5.5e-13 77.4 45 77.8
Oeu027735.1 Olea europaea HOM05D004170 ORTHO05D005976 5.5e-13 77.4 45 75.6
Ca_08074_v3 Cicer arietinum L. HOM05D003195 ORTHO05D003773 7.2e-13 77.0 45 77.8
CsaV3_3G015860 Cucumis sativus L. HOM05D004170 ORTHO05D005976 7.2e-13 77.0 44 79.5
TPR.G29080 Trifolium pratense HOM05D004170 ORTHO05D005976 7.2e-13 77.0 45 75.6
ATR0174G040 Amborella trichopoda HOM05D004170 ORTHO05D005976 9.4e-13 76.6 45 77.8
Gohir.D09G164500 Gossypium hirsutum HOM05D004170 ORTHO05D005976 9.4e-13 76.6 45 75.6
Phvul.008G006500 Phaseolus vulgaris HOM05D004170 ORTHO05D005976 9.4e-13 76.6 45 77.8
CDE02G0576 Ceratophyllum demersum HOM05D004170 ORTHO05D005976 1.2e-12 76.3 57 64.9
FAN07G2475 Fragaria x ananassa HOM05D004170 ORTHO05D005976 1.2e-12 76.3 45 75.6
Lsat_1_v5_gn_1_71660 Lactuca sativa HOM05D004170 ORTHO05D005976 1.2e-12 76.3 55 65.5
Lalb_Chr17g0335931 Lupinus albus HOM05D004170 ORTHO05D005976 1.2e-12 76.3 45 75.6
Psat3g098520 Pisum sativum HOM05D004170 ORTHO05D005976 1.2e-12 76.3 45 77.8
VMungo1383G1615 Vigna mungo HOM05D004170 ORTHO05D005976 1.2e-12 76.3 44 79.5
PGSC0003DMG400021605 Solanum tuberosum HOM05D004170 ORTHO05D005976 2.1e-12 75.5 44 77.3
Gohir.A09G168800 Gossypium hirsutum HOM05D004170 ORTHO05D005976 2.7e-12 75.1 45 73.3
Gorai.006G186300 Gossypium raimondii HOM05D004170 ORTHO05D005976 3.6e-12 74.7 45 73.3
Peaxi162Scf00286g00334 Petunia axillaris HOM05D004170 ORTHO05D005976 3.6e-12 74.7 45 73.3
QL10p047503 Quercus lobata HOM05D004170 ORTHO05D005976 3.6e-12 74.7 45 75.6
HPP92_028240 Vanilla planifolia HOM05D004170 ORTHO05D005976 3.6e-12 74.7 44 77.3
Solyc09g098390.3 Solanum lycopersicum HOM05D004170 ORTHO05D005976 6.1e-12 73.9 44 75.0
Sopen09g036320 Solanum pennellii HOM05D004170 ORTHO05D005976 6.1e-12 73.9 44 75.0
AagrBONN_evm.TU.Sc2ySwM_368.2692 Anthoceros agrestis HOM05D004170 ORTHO05D005976 2.3e-11 72.0 45 71.1
Lj1g0005305 Lotus japonicus HOM05D004170 ORTHO05D005976 3.0e-11 71.6 45 71.1
Mapoly0009s0012 Marchantia polymorpha HOM05D004170 ORTHO05D005976 6.7e-11 70.5 45 68.9
HPP92_002778 Vanilla planifolia HOM05D004170 ORTHO05D005976 6.7e-11 70.5 44 72.7
Hund12229 Selenicereus undatus HOM05D004170 ORTHO05D005976 8.8e-11 70.1 75 52.0
AagrBONN_evm.TU.Sc2ySwM_344.4993 Anthoceros agrestis HOM05D004170 ORTHO05D005976 1.1e-10 69.7 57 59.6
AagrBONN_evm.TU.Sc2ySwM_368.2693 Anthoceros agrestis HOM05D004170 ORTHO05D005976 1.1e-10 69.7 57 59.6
SMO167G0082 Selaginella moellendorffii HOM05D004170 ORTHO05D005976 1.1e-10 69.7 44 75.0
SMO347G0366 Selaginella moellendorffii HOM05D004170 ORTHO05D005976 1.1e-10 69.7 44 75.0
Pp3c12_15180 Physcomitrium patens HOM05D004170 ORTHO05D005976 4.4e-10 67.8 45 71.1
PSO017G0653 Papaver somniferum HOM05D004170 ORTHO05D005976 1.1e-08 63.2 44 70.5
SGA_v2.0_scaffold81G26074 Striga asiatica HOM05D004170 ORTHO05D005976 1.8e-08 62.4 54 64.8
BolC2t09639H Brassica oleracea HOM05D004170 ORTHO05D005976 5.3e-08 60.8 45 60.0
BolC6t35221H Brassica oleracea HOM05D004170 ORTHO05D016022 9.1e-08 60.1 32 90.6
CBR_g19868 Chara braunii HOM05D004170 ORTHO05D005976 1.2e-07 59.7 57 50.9
BolC6t38965H Brassica oleracea HOM05D004170 ORTHO05D104353 2.0e-07 58.9 32 90.6
BcaC07g37616 Brassica carinata HOM05D004170 ORTHO05D005976 2.7e-07 58.5 30 86.7


User provided reference genes

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