Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08374 Brassica carinata HOM05D005598 ORTHO05D006587 3.2e-167 591.7 295 100.0
C04p55060 Brassica napus HOM05D005598 ORTHO05D006587 3.2e-167 591.7 295 100.0
BolC4t27046H Brassica oleracea HOM05D005598 ORTHO05D006587 3.2e-167 591.7 295 100.0
BraA04t17544Z Brassica rapa HOM05D005598 ORTHO05D006587 2.1e-166 589.0 295 99.0
A04p19500 Brassica napus HOM05D005598 ORTHO05D006587 1.0e-165 586.6 295 98.3
BcaB06g28035 Brassica carinata HOM05D005598 ORTHO05D006587 3.1e-162 575.1 295 96.6
Sp4g04110 Schrenkiella parvula HOM05D005598 ORTHO05D006587 8.8e-157 557.0 292 94.9
Carub.0004s0468 Capsella rubella HOM05D005598 ORTHO05D006587 3.2e-151 538.5 292 90.8
AT2G25100 Arabidopsis thaliana HOM05D005598 ORTHO05D006587 2.1e-150 535.8 292 90.1
CARHR116600 Cardamine hirsuta HOM05D005598 ORTHO05D006587 2.7e-150 535.4 292 90.1
Aa31LG7G12150 Aethionema arabicum HOM05D005598 ORTHO05D006587 1.0e-144 516.9 292 88.4
THA.LOC104824207 Tarenaya hassleriana HOM05D005598 ORTHO05D006587 3.2e-143 511.9 296 84.8
Thhalv10000575m.g Eutrema salsugineum HOM05D005598 ORTHO05D006587 1.6e-142 509.6 295 87.1
CSS0000091 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 9.7e-132 473.8 291 78.0
TAR636G1340 Trochodendron aralioides HOM05D005598 ORTHO05D006587 4.8e-131 471.5 291 78.7
Atru.chr12.1043 Acer truncatum HOM05D005598 ORTHO05D006587 6.3e-131 471.1 293 77.8
QL04p046731 Quercus lobata HOM05D005598 ORTHO05D006587 6.3e-131 471.1 292 77.1
CiPaw.13G040600 Carya illinoinensis HOM05D005598 ORTHO05D006587 3.1e-130 468.8 291 78.4
Nn6g34854 Nelumbo nucifera HOM05D005598 ORTHO05D006587 4.1e-130 468.4 291 78.0
TWI38G0756 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 4.5e-129 464.9 291 77.7
MD02G1261600 Malus domestica HOM05D005598 ORTHO05D006587 7.7e-129 464.2 291 77.0
Rhsim09G0141700 Rhododendron simsii HOM05D005598 ORTHO05D006587 1.0e-128 463.8 291 75.9
Ciclev10016103m.g Citrus clementina HOM05D005598 ORTHO05D006587 2.9e-128 462.2 291 77.3
Potri.008G019800 Populus trichocarpa HOM05D005598 ORTHO05D006587 1.1e-127 460.3 291 76.3
Lj2C33T4 Lonicera japonica HOM05D005598 ORTHO05D006587 1.5e-127 459.9 294 75.2
Migut.F01603 Erythranthe guttata HOM05D005598 ORTHO05D006587 5.5e-127 458.0 291 76.3
GSVIVG01010722001 Vitis vinifera HOM05D005598 ORTHO05D006587 9.4e-127 457.2 291 75.9
SalBow6G5745 Salvia bowleyana HOM05D005598 ORTHO05D006587 1.2e-126 456.8 291 77.3
Cc02_g09610 Coffea canephora HOM05D005598 ORTHO05D006587 2.7e-126 455.7 291 74.6
CsaV3_4G003460 Cucumis sativus L. HOM05D005598 ORTHO05D006587 2.7e-126 455.7 294 74.5
HanXRQChr11g0342091 Helianthus annuus HOM05D005598 ORTHO05D006587 3.6e-126 455.3 291 74.6
Sabra08G0013100 Salix brachista HOM05D005598 ORTHO05D006587 3.6e-126 455.3 292 76.0
Duzib128G1802 Durio zibethinus HOM05D005598 ORTHO05D006587 8.0e-126 454.1 291 76.3
MELO3C017716.2 Cucumis melo HOM05D005598 ORTHO05D006587 1.4e-125 453.4 294 74.1
PSO339G6152 Papaver somniferum HOM05D005598 ORTHO05D006587 1.8e-125 453.0 291 74.6
arahy.Tifrunner.gnm1.ann1.8DLZ0X Arachis hypogaea HOM05D005598 ORTHO05D006587 2.3e-125 452.6 290 75.5
Eucgr.G02689 Eucalyptus grandis HOM05D005598 ORTHO05D006587 2.3e-125 452.6 291 76.3
PGR142G4231 Punica granatum HOM05D005598 ORTHO05D006587 3.0e-125 452.2 294 75.2
Gohir.D05G288900 Gossypium hirsutum HOM05D005598 ORTHO05D006587 6.8e-125 451.1 292 76.0
Sc09g0005330 Simmondsia chinensis HOM05D005598 ORTHO05D006587 8.8e-125 450.7 291 74.6
Gohir.A05G287700 Gossypium hirsutum HOM05D005598 ORTHO05D006587 1.2e-124 450.3 292 76.0
Nitab4.5_0003590g0030 Nicotiana tabacum HOM05D005598 ORTHO05D006587 1.2e-124 450.3 291 74.6
Haze_03295 Corylus avellana HOM05D005598 ORTHO05D006587 1.5e-124 449.9 302 73.5
MSTRG.23901 Avicennia marina HOM05D005598 ORTHO05D006587 2.0e-124 449.5 291 75.3
DCAR_006354 Daucus carota HOM05D005598 ORTHO05D006587 2.0e-124 449.5 291 73.9
Gorai.009G304000 Gossypium raimondii HOM05D005598 ORTHO05D006587 2.6e-124 449.1 294 75.5
Hund06785 Selenicereus undatus HOM05D005598 ORTHO05D006587 2.6e-124 449.1 292 75.3
Peaxi162Scf00173g00110 Petunia axillaris HOM05D005598 ORTHO05D006587 3.4e-124 448.7 291 73.5
CAN.G645.19 Capsicum annuum HOM05D005598 ORTHO05D006587 4.4e-124 448.4 291 74.2
Sopen11g002760 Solanum pennellii HOM05D005598 ORTHO05D006587 4.4e-124 448.4 291 73.5
EL10Ac4g08688 Beta vulgaris HOM05D005598 ORTHO05D006587 5.7e-124 448.0 292 74.7
Ca_25662_v3 Cicer arietinum L. HOM05D005598 ORTHO05D006587 5.7e-124 448.0 291 74.9
Lsat_1_v5_gn_2_104400 Lactuca sativa HOM05D005598 ORTHO05D006587 5.7e-124 448.0 286 74.8
ECA238G1649 Erigeron canadensis HOM05D005598 ORTHO05D006587 9.8e-124 447.2 291 75.3
Thecc.10G109100 Theobroma cacao HOM05D005598 ORTHO05D006587 9.8e-124 447.2 291 75.6
Solyc11g006860.2 Solanum lycopersicum HOM05D005598 ORTHO05D006587 2.2e-123 446.0 291 73.5
Lj5g0018811 Lotus japonicus HOM05D005598 ORTHO05D006587 2.8e-123 445.7 291 74.6
RcHm_v2.0_Chr5g0049931 Rosa chinensis HOM05D005598 ORTHO05D006587 2.8e-123 445.7 291 73.5
PGSC0003DMG400023970 Solanum tuberosum HOM05D005598 ORTHO05D006587 2.8e-123 445.7 291 73.5
arahy.Tifrunner.gnm1.ann1.L8YGTT Arachis hypogaea HOM05D005598 ORTHO05D006587 4.8e-123 444.9 291 74.6
CANSAT56G2222 Cannabis sativa HOM05D005598 ORTHO05D006587 4.8e-123 444.9 291 74.9
HPP92_000055 Vanilla planifolia HOM05D005598 ORTHO05D006587 1.1e-122 443.7 290 72.8
Sed0022725 Sechium edule HOM05D005598 ORTHO05D006587 1.4e-122 443.4 291 73.2
Aqoxy4G02744 Aquilegia oxysepala HOM05D005598 ORTHO05D006587 1.8e-122 443.0 293 72.4
TPR.G2473 Trifolium pratense HOM05D005598 ORTHO05D006587 2.4e-122 442.6 291 73.2
AUR62042081 Chenopodium quinoa HOM05D005598 ORTHO05D006587 4.1e-122 441.8 292 73.6
Phvul.007G022800 Phaseolus vulgaris HOM05D005598 ORTHO05D006587 4.1e-122 441.8 294 73.5
Medtr1g111980 Medicago truncatula HOM05D005598 ORTHO05D006587 7.0e-122 441.0 291 72.5
CDE08G1414 Ceratophyllum demersum HOM05D005598 ORTHO05D006587 3.5e-121 438.7 291 72.5
VMungo0720G0111 Vigna mungo HOM05D005598 ORTHO05D006587 3.5e-121 438.7 293 73.4
FAN11G2626 Fragaria x ananassa HOM05D005598 ORTHO05D006587 1.7e-120 436.4 291 73.5
ATR0820G296 Amborella trichopoda HOM05D005598 ORTHO05D006587 2.9e-120 435.6 292 71.6
ClCG07G015650 Citrullus lanatus HOM05D005598 ORTHO05D006587 3.8e-120 435.3 322 67.4
FvH4_3g27560 Fragaria vesca HOM05D005598 ORTHO05D006587 1.5e-119 433.3 291 73.2
Oeu024809.1 Olea europaea HOM05D005598 ORTHO05D006587 1.5e-119 433.3 324 66.4
Lalb_Chr02g0146251 Lupinus albus HOM05D005598 ORTHO05D006587 3.3e-119 432.2 291 73.2
Os11g0153900 Oryza sativa ssp. japonica HOM05D005598 ORTHO05D006587 7.2e-119 431.0 291 70.8
FAN16G3025 Fragaria x ananassa HOM05D005598 ORTHO05D006587 2.3e-117 426.0 291 71.8
vmacro10312 Vaccinium macrocarpon HOM05D005598 ORTHO05D006587 5.2e-117 424.9 293 70.0
Manes.10G062100 Manihot esculenta HOM05D005598 ORTHO05D006587 2.6e-116 422.5 272 75.7
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 4.4e-116 421.8 275 76.0
Nitab4.5_0002586g0090 Nicotiana tabacum HOM05D005598 ORTHO05D006587 7.5e-116 421.0 326 65.3
SGA_v2.0_scaffold62G21319 Striga asiatica HOM05D005598 ORTHO05D006587 9.2e-114 414.1 271 74.9
CSS0039611 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 5.9e-113 411.4 304 67.1
TWI63G1098 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 1.0e-112 410.6 291 71.1
unitig_736.g22318 Utricularia gibba HOM05D005598 ORTHO05D006587 1.6e-110 403.3 292 68.5
SEGI_12354 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 6.1e-110 401.4 287 66.6
Dinv10930 Davidia involucrata HOM05D005598 ORTHO05D006587 1.4e-109 400.2 232 80.6
Dinv11826 Davidia involucrata HOM05D005598 ORTHO05D006587 1.8e-109 399.8 268 73.9
Actinidia34728 Actinidia chinensis HOM05D005598 ORTHO05D006587 6.8e-109 397.9 242 77.3
Glyma.10G278500 Glycine max HOM05D005598 ORTHO05D006587 2.2e-107 392.9 270 73.3
PSO801G0206 Papaver somniferum HOM05D005598 ORTHO05D006587 3.2e-106 389.0 231 77.9
Prupe.2G069600 Prunus persica HOM05D005598 ORTHO05D006587 6.0e-105 384.8 231 78.4
Zm00001eb406890 Zea mays HOM05D005598 ORTHO05D006587 3.9e-104 382.1 267 68.2
AL4G16260 Arabidopsis lyrata HOM05D005598 ORTHO05D006587 1.4e-101 373.6 208 89.4
Cpa.g.c34135 Carica papaya HOM05D005598 ORTHO05D006587 2.0e-100 369.8 221 81.4
MBI01_g02157_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 7.0e-98 361.3 247 72.1
Psat0s4121g0080 Pisum sativum HOM05D005598 ORTHO05D006587 7.5e-92 341.3 230 72.2
Pp3c13_7860 Physcomitrium patens HOM05D005598 ORTHO05D006587 7.1e-90 334.7 290 57.2
AagrBONN_evm.TU.Sc2ySwM_362.477 Anthoceros agrestis HOM05D005598 ORTHO05D006587 1.7e-88 330.1 293 57.0
Mapoly0006s0052 Marchantia polymorpha HOM05D005598 ORTHO05D006587 5.1e-88 328.6 291 56.7
AUR62041514 Chenopodium quinoa HOM05D005598 ORTHO05D006587 8.1e-78 294.7 402 46.0
DCAR_006363 Daucus carota HOM05D005598 ORTHO05D006587 1.8e-77 293.5 282 58.2
SMO347G0320 Selaginella moellendorffii HOM05D005598 ORTHO05D006587 7.1e-66 255.0 272 51.8
Lalb_Chr21g0309151 Lupinus albus HOM05D005598 ORTHO05D006587 7.4e-55 218.4 153 73.9
CiPaw.14G033400 Carya illinoinensis HOM05D005598 ORTHO05D006587 2.4e-53 213.4 263 52.1
Haze_26455 Corylus avellana HOM05D005598 ORTHO05D006587 3.1e-53 213.0 246 46.3
Cre17.g701350 Chlamydomonas reinhardtii HOM05D005598 ORTHO05D006587 9.0e-53 211.5 290 39.3
Ah.04g160180 Amaranthus hybridus HOM05D005598 ORTHO05D006587 2.1e-49 200.3 120 79.2
Psat4g059000 Pisum sativum HOM05D005598 ORTHO05D006587 3.3e-47 193.0 117 72.6
CBR_g29781 Chara braunii HOM05D005598 ORTHO05D006587 2.8e-46 189.9 193 52.8
Glyma.07G162800 Glycine max HOM05D005598 ORTHO05D006587 6.7e-40 168.7 146 62.3
Cfa026153 Carpinus fangiana HOM05D005598 ORTHO05D006587 2.0e-36 157.1 235 40.4
MD02G1261400 Malus domestica HOM05D005598 ORTHO05D006587 2.0e-36 157.1 175 51.4
HanXRQChr05g0158341 Helianthus annuus HOM05D005598 ORTHO05D006587 7.4e-31 138.7 111 61.3
Zm00001eb407010 Zea mays HOM05D005598 ORTHO05D006587 2.6e-28 130.2 83 75.9
Psat0s449g0080 Pisum sativum HOM05D000909 ORTHO05D000928 1.2e-25 121.3 63 87.3
Psat0s1058g0040 Pisum sativum HOM05D005598 ORTHO05D006587 1.3e-19 101.3 52 88.5
Lsat_1_v5_gn_9_94660 Lactuca sativa HOM05D005598 ORTHO05D006587 3.2e-18 96.7 60 78.3
SEGI_12669 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 2.0e-15 87.4 47 78.7
Psat5g185320 Pisum sativum HOM05D000559 ORTHO05D006587 9.7e-15 85.1 45 82.2
MBI01_g19134_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 3.7e-14 83.2 46 82.6
Psat4g071240 Pisum sativum HOM05D005598 ORTHO05D006587 9.1e-13 78.6 190 31.6
Sabra10G0187600 Salix brachista HOM05D005598 ORTHO05D006587 1.6e-12 77.8 59 61.0
Psat5g299440 Pisum sativum HOM05D005598 ORTHO05D006587 7.7e-12 75.5 110 40.0
Lalb_Chr21g0309141 Lupinus albus HOM05D005598 ORTHO05D006587 2.5e-10 70.5 45 73.3
BraA09t40992Z Brassica rapa HOM05D005598 ORTHO05D040595 3.6e-09 66.6 117 42.7
A09p55890 Brassica napus HOM05D005598 ORTHO05D040595 6.1e-09 65.9 77 45.5
BolC8t51460H Brassica oleracea HOM05D005598 ORTHO05D041141 8.0e-09 65.5 42 81.0
Cre13.g561900 Chlamydomonas reinhardtii HOM05D016613 ORTHO05D014817 1.4e-08 64.7 181 31.5
Lalb_Chr21g0309161 Lupinus albus HOM05D005598 ORTHO05D006587 2.3e-08 63.9 79 46.8
Mapoly0023s0164 Marchantia polymorpha HOM05D016613 ORTHO05D014817 4.0e-08 63.2 181 30.4
Pp3c2_19600 Physcomitrium patens HOM05D016613 ORTHO05D014817 4.4e-07 59.7 174 29.9
C08p38870 Brassica napus HOM05D005598 ORTHO05D041141 9.8e-07 58.5 31 90.3
Psat7g021760 Pisum sativum HOM05D000559 ORTHO05D000596 1.3e-06 58.2 25 96.0
MCO01G455 Micromonas commoda HOM05D016613 ORTHO05D014817 2.2e-06 57.4 166 30.7
Psat6g162040 Pisum sativum HOM05D005598 ORTHO05D006587 2.2e-06 57.4 83 45.8


User provided reference genes

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