Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 2059.3 1042 100.0
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 2043.5 1043 99.6
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 0.0e+00 1965.3 1047 96.1
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 0.0e+00 1467.6 1034 75.6
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 0.0e+00 1437.6 1039 74.9
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1429.5 1032 74.6
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1418.3 1033 74.2
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1418.3 1066 72.9
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 0.0e+00 1410.6 1037 74.0
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1393.6 1066 71.9
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 0.0e+00 1391.3 1035 72.0
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 0.0e+00 1390.6 1038 72.7
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 0.0e+00 1380.9 1040 72.0
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 0.0e+00 1372.8 1041 71.8
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 0.0e+00 1202.6 1045 63.8
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 0.0e+00 1137.9 1021 62.8
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 0.0e+00 1099.0 804 72.4
BcaC02g08126 Brassica carinata HOM05D001082 ORTHO05D005120 1.0e-231 807.7 500 84.2
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 1.3e-218 764.2 1021 45.5
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 4.1e-217 759.2 1031 45.3
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 4.1e-217 759.2 1010 45.1
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 4.2e-214 749.2 1018 44.1
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 1.8e-212 743.8 1017 44.3
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 1.8e-212 743.8 1020 44.4
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 2.8e-210 736.5 1014 43.7
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 5.9e-208 728.8 1020 43.6
C04p58080 Brassica napus HOM05D001082 ORTHO05D005120 1.0e-207 728.0 451 83.6
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 6.6e-207 725.3 1012 43.4
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 3.4e-203 713.0 1025 42.9
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 2.4e-201 706.8 943 44.4
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 5.4e-201 705.7 1018 42.0
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 1.0e-199 701.4 1128 40.9
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 3.0e-199 699.9 1057 43.2
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 3.9e-199 699.5 1031 43.3
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 5.0e-199 699.1 1055 41.6
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 1.5e-198 697.6 1056 41.4
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 4.3e-198 696.0 1015 42.4
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 5.6e-198 695.7 1002 43.0
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 7.3e-198 695.3 1016 41.9
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 1.1e-196 691.4 1054 42.1
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 2.3e-196 690.3 1008 42.9
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 9.8e-195 684.9 1015 41.5
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 9.2e-193 678.3 1019 41.4
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 3.0e-191 673.3 977 41.8
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 2.5e-190 670.2 1034 41.5
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 1.1e-188 664.8 1016 40.6
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 1.4e-188 664.5 1015 39.9
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 4.0e-188 662.9 1015 41.1
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 5.2e-188 662.5 1019 40.2
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 6.8e-188 662.1 1046 40.3
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 8.9e-188 661.8 1025 40.8
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 4.4e-187 659.4 1016 40.5
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 2.2e-186 657.1 1013 41.1
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 8.3e-186 655.2 1064 39.6
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 8.3e-186 655.2 1026 40.6
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 1.1e-185 654.8 1015 40.0
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 1.6e-184 651.0 1030 40.8
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 2.7e-184 650.2 1017 40.4
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 2.3e-183 647.1 830 44.5
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 3.0e-183 646.7 1012 40.1
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 3.9e-183 646.4 1043 40.2
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 8.6e-183 645.2 1017 40.6
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 3.3e-182 643.3 1031 38.8
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 3.3e-182 643.3 1031 38.8
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 7.3e-182 642.1 1032 40.4
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 4.7e-181 639.4 1024 39.6
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 8.1e-181 638.6 1027 40.6
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 1.1e-180 638.3 1073 37.9
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 1.8e-180 637.5 1015 40.0
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 3.4e-179 633.3 1036 39.6
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 1.3e-178 631.3 1017 39.2
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 1.7e-178 630.9 1021 39.2
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 1.7e-178 630.9 1040 39.0
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 2.2e-178 630.6 1031 38.5
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 4.1e-177 626.3 1020 38.6
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 4.6e-176 622.9 1026 39.0
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 1.7e-175 620.9 1034 38.7
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 2.3e-175 620.5 1020 38.9
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 5.1e-175 619.4 1060 38.4
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 1.1e-172 611.7 732 46.9
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 3.9e-167 593.2 1029 37.4
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 5.6e-166 589.3 1080 36.8
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 2.4e-164 583.9 709 47.4
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 3.1e-164 583.6 1029 37.8
BolC4t27335H Brassica oleracea HOM05D001082 ORTHO05D005120 1.2e-163 581.6 392 79.6
Hma1.2p1_0052F.1_g030150 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 5.4e-161 572.8 734 45.4
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 1.1e-158 565.1 1031 36.7
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 1.3e-157 561.6 1010 37.3
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 1.1e-150 538.5 1310 31.1
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 2.6e-147 527.3 1013 35.8
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 5.8e-147 526.2 1036 36.5
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 4.9e-146 523.1 1068 34.5
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 1.0e-135 488.8 663 44.0
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 6.7e-135 486.1 978 33.9
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 9.1e-132 475.7 608 45.9
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 3.8e-130 470.3 1034 31.7
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 6.5e-130 469.5 605 43.6
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.1e-129 468.8 1029 31.9
Hma1.2p1_0052F.1_g030160 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 9.4e-129 465.7 603 45.1
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 1.2e-123 448.7 624 44.6
SHI21156 Sapria himalayana HOM05D001082 ORTHO05D005120 1.4e-121 441.8 665 41.2
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 1.4e-119 435.3 595 43.4
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 8.0e-104 382.9 477 44.7
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 1.0e-90 339.3 669 34.2
AagrBONN_evm.TU.Sc2ySwM_362.2782 Anthoceros agrestis HOM05D001082 ORTHO05D005120 1.5e-89 335.5 970 28.7
Pp3c11_26590 Physcomitrium patens HOM05D001082 ORTHO05D005120 5.6e-89 333.6 1035 28.6
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 1.7e-82 312.0 1044 27.2
Cpa.g.sc21.218 Carica papaya HOM05D001082 ORTHO05D005120 1.1e-65 256.1 297 48.1
ClCG06G008350 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.4e-60 239.2 348 41.7
MD05G1162400 Malus domestica HOM05D001082 ORTHO05D005120 1.3e-58 232.6 311 45.0
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 1.2e-54 219.5 299 42.8
SMO239G0052 Selaginella moellendorffii HOM05D001082 ORTHO05D005120 2.2e-53 215.3 902 25.6
SEGI_15028 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 4.8e-48 197.6 358 35.2
Cpa.g.sc21.217 Carica papaya HOM05D001082 ORTHO05D005120 1.4e-47 196.1 212 51.4
ClCG06G008360 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.1e-44 186.4 295 39.7
BcaB06g28204 Brassica carinata HOM05D001082 ORTHO05D005120 1.2e-43 183.0 168 63.1
CBR_g55211 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-41 176.4 684 24.9
ClCG06G008340 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.3e-40 172.9 549 29.1
VMungo0720G1958 Vigna mungo HOM05D001082 ORTHO05D005120 7.6e-38 163.7 473 31.1
Cpa.g.sc21.222 Carica papaya HOM05D001082 ORTHO05D005120 7.9e-35 153.7 280 41.1
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 7.9e-35 153.7 260 40.0
MD05G1161300 Malus domestica HOM05D001082 ORTHO05D005120 1.5e-33 149.4 410 34.1
MD08G1158700 Malus domestica HOM05D001082 ORTHO05D005120 1.3e-32 146.4 284 34.5
Solyc01g102550.4 Solanum lycopersicum HOM05D001082 ORTHO05D005120 1.4e-31 142.9 299 35.5
CDE01G0761 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 3.8e-29 134.8 296 31.4
unitig_22.g5790 Utricularia gibba HOM05D001082 ORTHO05D005120 1.8e-26 125.9 796 23.4
VMungo0720G0600 Vigna mungo HOM05D001082 ORTHO05D010195 1.1e-25 123.2 193 39.9
BcaC02g08127 Brassica carinata HOM05D001082 ORTHO05D005120 1.5e-25 122.9 119 61.3
SEGI_12765 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.5e-25 122.9 237 34.6
BolC4t27334H Brassica oleracea HOM05D001082 ORTHO05D005120 1.9e-25 122.5 119 61.3
CAN.G1379.29 Capsicum annuum HOM05D001082 ORTHO05D005120 9.7e-25 120.2 465 26.2
MD10G1160000 Malus domestica HOM05D001082 ORTHO05D005120 1.4e-23 116.3 194 39.2
Hma1.2p1_0052F.1_g030140 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 3.4e-22 111.7 222 37.4
SEGI_20053 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 3.4e-22 111.7 309 27.8
MD05G1063300 Malus domestica HOM05D001082 ORTHO05D005120 1.1e-20 106.7 178 41.0
TAR339G0004 Trochodendron aralioides HOM05D001082 ORTHO05D005120 1.6e-19 102.8 249 31.3
SHI21155 Sapria himalayana HOM05D001082 ORTHO05D005120 1.8e-18 99.4 192 37.0
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 3.0e-18 98.6 180 37.8
VMungo0720G0348 Vigna mungo HOM05D001082 ORTHO05D005120 1.5e-17 96.3 141 36.9
VMungo0720G2272 Vigna mungo HOM05D001082 ORTHO05D005120 3.1e-15 88.6 123 41.5
Atru.chr12.2422 Acer truncatum HOM05D001082 ORTHO05D005120 2.0e-14 85.9 77 55.8
VMungo0720G0635 Vigna mungo HOM05D001082 ORTHO05D000001 2.6e-14 85.5 86 53.5
Atru.chr6.17 Acer truncatum HOM05D001082 ORTHO05D005120 4.5e-14 84.7 76 55.3
ECA233G2822 Erigeron canadensis HOM05D001082 ORTHO05D005120 1.4e-12 79.7 85 48.2
C04p58090 Brassica napus HOM05D001082 ORTHO05D102233 1.4e-10 73.2 41 97.6
MD07G1280900 Malus domestica HOM05D001082 ORTHO05D005120 1.1e-09 70.1 95 45.3
MD00G1034800 Malus domestica HOM05D001082 ORTHO05D005120 5.7e-09 67.8 95 44.2
unitig_22.g5791 Utricularia gibba HOM05D001082 ORTHO05D005120 4.8e-08 64.7 91 44.0


User provided reference genes

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