Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08126 Brassica carinata HOM05D001082 ORTHO05D005120 4.0e-287 990.7 502 100.0
C04p58080 Brassica napus HOM05D001082 ORTHO05D005120 2.6e-257 891.7 449 99.6
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 2.0e-233 812.4 500 83.8
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 5.7e-233 810.8 500 84.2
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 5.7e-233 810.8 500 84.2
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 7.8e-222 773.9 500 79.6
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 6.1e-219 764.2 500 79.0
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 1.8e-218 762.7 500 79.4
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 5.2e-218 761.1 500 78.2
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 5.7e-217 757.7 500 78.6
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 7.5e-217 757.3 500 78.6
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 2.9e-216 755.4 500 78.2
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 1.8e-215 752.7 500 78.0
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 7.8e-214 747.3 529 75.0
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 3.9e-213 745.0 490 78.0
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 2.5e-212 742.3 529 74.3
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 1.2e-209 733.4 494 77.5
BolC4t27335H Brassica oleracea HOM05D001082 ORTHO05D005120 4.4e-201 704.9 389 93.1
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 6.2e-179 631.3 494 68.0
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 4.2e-175 618.6 500 65.8
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 7.2e-127 458.4 504 50.0
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 8.8e-125 451.4 498 49.0
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 2.2e-120 436.8 504 47.0
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 8.5e-120 434.9 504 46.6
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 7.2e-119 431.8 504 46.4
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 9.4e-119 431.4 504 47.0
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 6.1e-118 428.7 505 47.1
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 1.2e-116 424.5 504 47.2
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 1.3e-115 421.0 504 47.8
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 1.0e-112 411.4 503 45.5
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 3.8e-112 409.5 503 46.1
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 1.6e-110 404.1 505 45.3
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 3.6e-110 402.9 504 44.4
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 3.6e-110 402.9 504 46.2
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 6.1e-110 402.1 505 45.1
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 1.0e-109 401.4 498 46.2
Hma1.2p1_0052F.1_g030150 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 1.8e-109 400.6 500 45.6
Hma1.2p1_0052F.1_g030160 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 1.5e-108 397.5 500 45.2
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 7.5e-108 395.2 503 45.5
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 1.3e-107 394.4 504 45.2
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 3.7e-107 392.9 504 44.6
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 6.3e-107 392.1 505 44.8
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 1.1e-106 391.3 505 44.8
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 3.1e-106 389.8 504 44.0
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 3.1e-106 389.8 502 44.0
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 2.0e-105 387.1 504 43.8
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 4.5e-105 386.0 506 44.3
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 1.3e-104 384.4 504 43.7
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 1.3e-104 384.4 505 42.6
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 2.5e-103 380.2 503 41.9
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 4.3e-103 379.4 504 43.1
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 4.0e-101 372.9 504 42.7
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 4.0e-101 372.9 498 43.6
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 4.4e-100 369.4 503 41.7
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 2.9e-99 366.7 530 39.8
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 2.9e-99 366.7 505 41.4
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 3.7e-99 366.3 506 41.3
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 6.4e-99 365.5 503 41.4
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 1.1e-98 364.8 495 41.0
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 4.1e-98 362.8 455 45.9
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 4.1e-98 362.8 504 40.9
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 3.5e-97 359.8 504 41.7
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 7.8e-97 358.6 509 43.0
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 1.7e-96 357.5 506 40.5
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 2.3e-96 357.1 508 41.7
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 1.9e-95 354.0 496 41.7
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 3.3e-95 353.2 503 40.2
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 5.6e-95 352.4 499 41.9
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 7.3e-95 352.1 510 40.6
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 7.3e-95 352.1 505 41.2
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 9.5e-95 351.7 501 40.9
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 1.2e-94 351.3 496 40.1
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 3.6e-94 349.7 505 41.4
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 8.0e-94 348.6 495 41.0
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 1.4e-93 347.8 494 40.9
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 5.2e-93 345.9 501 41.9
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 5.2e-93 345.9 487 41.5
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 8.9e-93 345.1 498 39.8
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 1.7e-91 340.9 496 39.9
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 1.1e-90 338.2 500 40.2
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 1.4e-90 337.8 502 40.8
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 1.4e-90 337.8 502 40.8
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 2.4e-90 337.0 500 40.2
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 3.2e-90 336.7 491 41.8
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 3.2e-90 336.7 501 40.9
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 4.1e-90 336.3 501 40.9
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 7.0e-90 335.5 502 41.4
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 2.1e-89 334.0 501 40.3
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 6.0e-89 332.4 531 38.2
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 6.0e-89 332.4 500 40.6
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 7.8e-89 332.0 500 38.4
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 2.3e-88 330.5 502 40.6
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 3.9e-88 329.7 506 39.1
SHI21156 Sapria himalayana HOM05D001082 ORTHO05D005120 4.3e-87 326.2 504 38.7
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 3.1e-85 320.1 548 36.9
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 2.9e-83 313.5 540 37.4
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 1.1e-82 311.6 370 48.1
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 8.6e-80 302.0 503 38.4
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 8.6e-80 302.0 396 42.7
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 2.5e-71 273.9 504 33.3
Cpa.g.sc21.218 Carica papaya HOM05D001082 ORTHO05D005120 1.7e-67 261.2 297 48.1
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 3.2e-66 256.9 496 33.3
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 9.3e-66 255.4 554 32.5
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 7.8e-65 252.3 450 36.4
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 7.3e-63 245.7 487 35.9
ClCG06G008350 Citrullus lanatus HOM05D001082 ORTHO05D005120 9.0e-61 238.8 325 41.2
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 6.2e-54 216.1 311 41.2
SEGI_15028 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 5.6e-47 193.0 308 37.3
Pp3c11_26590 Physcomitrium patens HOM05D001082 ORTHO05D005120 3.1e-45 187.2 509 28.3
AagrBONN_evm.TU.Sc2ySwM_362.2782 Anthoceros agrestis HOM05D001082 ORTHO05D005120 7.6e-44 182.6 513 29.0
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 3.0e-40 170.6 504 28.2
MD05G1162400 Malus domestica HOM05D001082 ORTHO05D005120 4.3e-39 166.8 213 43.7
VMungo0720G0600 Vigna mungo HOM05D001082 ORTHO05D010195 7.7e-28 129.4 176 44.3
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 1.3e-27 128.6 215 37.2
MD10G1160000 Malus domestica HOM05D001082 ORTHO05D005120 1.7e-22 111.7 193 35.8
ClCG06G008360 Citrullus lanatus HOM05D001082 ORTHO05D005120 9.1e-21 105.9 195 34.9
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 2.2e-19 101.3 182 37.4
SMO239G0052 Selaginella moellendorffii HOM05D001082 ORTHO05D005120 2.5e-18 97.8 495 22.0
VMungo0720G0348 Vigna mungo HOM05D001082 ORTHO05D005120 2.5e-18 97.8 149 36.9
Cpa.g.sc21.217 Carica papaya HOM05D001082 ORTHO05D005120 5.5e-18 96.7 75 62.7
MD05G1063300 Malus domestica HOM05D001082 ORTHO05D005120 7.2e-18 96.3 179 34.6
unitig_22.g5790 Utricularia gibba HOM05D001082 ORTHO05D005120 3.7e-14 84.0 193 31.1
VMungo0720G2272 Vigna mungo HOM05D001082 ORTHO05D005120 1.7e-11 75.1 107 41.1
MD07G1280900 Malus domestica HOM05D001082 ORTHO05D005120 6.1e-09 66.6 95 38.9
MD00G1034800 Malus domestica HOM05D001082 ORTHO05D005120 3.0e-08 64.3 95 37.9


User provided reference genes

Program Settings