Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 1.0e-168 596.7 309 100.0
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 3.7e-97 359.0 448 53.3
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 9.0e-96 354.4 448 52.2
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 3.4e-95 352.4 448 52.0
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 1.1e-93 347.4 445 52.8
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 5.5e-93 345.1 448 51.6
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 1.6e-92 343.6 448 51.6
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 2.7e-92 342.8 445 52.4
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 4.6e-92 342.0 448 51.1
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 4.6e-92 342.0 448 51.1
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 4.6e-92 342.0 448 51.1
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 1.9e-90 336.7 441 52.2
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 4.1e-80 302.4 442 46.8
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 9.1e-80 301.2 316 61.4
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 1.2e-79 300.8 442 47.5
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 5.9e-79 298.5 332 55.7
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 5.5e-77 292.0 436 46.1
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 9.4e-77 291.2 432 46.8
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 2.1e-76 290.0 332 51.8
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 6.1e-76 288.5 332 53.6
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 7.9e-76 288.1 332 53.9
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 7.9e-76 288.1 432 46.5
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 1.0e-75 287.7 434 46.5
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 5.1e-75 285.4 332 53.6
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 1.7e-73 280.4 332 51.8
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 2.2e-73 280.0 437 45.8
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 2.8e-73 279.6 332 51.8
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 2.4e-72 276.6 332 50.9
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 2.4e-72 276.6 332 49.4
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 4.1e-72 275.8 332 49.1
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 4.1e-72 275.8 332 50.3
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 9.1e-72 274.6 325 51.4
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 9.1e-72 274.6 332 50.0
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 1.2e-71 274.2 332 50.6
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 1.6e-71 273.9 332 49.7
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 1.6e-71 273.9 332 50.0
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 1.6e-71 273.9 332 50.0
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 1.6e-71 273.9 332 49.7
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 2.0e-71 273.5 332 51.2
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 5.9e-71 271.9 332 50.3
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 5.9e-71 271.9 332 49.1
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 1.0e-70 271.2 332 49.7
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 1.3e-70 270.8 332 49.7
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 1.7e-70 270.4 332 50.3
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 1.7e-70 270.4 329 49.8
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 1.7e-70 270.4 332 50.6
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 2.2e-70 270.0 329 49.8
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 3.8e-70 269.2 332 49.4
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 6.5e-70 268.5 332 50.0
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 8.5e-70 268.1 332 49.7
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 8.5e-70 268.1 332 49.7
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 8.5e-70 268.1 332 49.4
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 8.5e-70 268.1 332 48.2
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 1.9e-69 266.9 332 48.5
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 1.9e-69 266.9 329 48.6
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 2.5e-69 266.5 332 48.5
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 2.5e-69 266.5 332 49.1
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 3.2e-69 266.2 332 49.1
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 3.2e-69 266.2 332 49.7
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 4.2e-69 265.8 332 48.8
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 5.5e-69 265.4 332 50.9
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 5.5e-69 265.4 332 49.7
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 5.5e-69 265.4 332 47.6
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 5.5e-69 265.4 332 49.1
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 7.2e-69 265.0 329 48.9
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 7.2e-69 265.0 332 48.5
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 7.2e-69 265.0 332 48.2
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 7.2e-69 265.0 332 48.2
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 7.2e-69 265.0 332 48.2
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 7.2e-69 265.0 332 50.0
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 9.4e-69 264.6 332 48.5
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 9.4e-69 264.6 332 49.4
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 9.4e-69 264.6 332 49.1
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 9.4e-69 264.6 332 49.4
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 1.2e-68 264.2 332 48.5
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 1.6e-68 263.8 329 48.6
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 2.7e-68 263.1 332 48.8
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 3.6e-68 262.7 332 49.4
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 3.6e-68 262.7 452 42.7
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 3.6e-68 262.7 452 42.7
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 4.7e-68 262.3 329 48.3
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 6.1e-68 261.9 332 48.5
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 8.0e-68 261.5 331 47.1
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 1.0e-67 261.2 332 48.8
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 1.8e-67 260.4 332 47.3
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 2.3e-67 260.0 332 48.2
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 2.3e-67 260.0 332 49.1
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 3.0e-67 259.6 332 49.1
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 5.2e-67 258.8 328 48.8
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 5.2e-67 258.8 332 47.9
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 8.8e-67 258.1 337 48.4
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 8.8e-67 258.1 336 48.5
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 8.8e-67 258.1 336 48.5
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 1.1e-66 257.7 332 46.7
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 1.8e-64 250.4 313 51.4
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 1.8e-64 250.4 190 74.7
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 3.1e-64 249.6 332 47.3
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 2.0e-63 246.9 344 44.8
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 7.7e-63 245.0 332 45.8
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 5.0e-62 242.3 332 44.0
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 5.0e-62 242.3 308 48.1
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 2.5e-61 240.0 332 44.9
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 3.6e-60 236.1 268 51.5
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 4.4e-58 229.2 322 46.0
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 1.8e-56 223.8 308 46.8
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 4.1e-56 222.6 307 46.9
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 7.0e-56 221.9 268 50.7
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 2.0e-55 220.3 311 44.7
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.7e-55 219.9 310 45.5
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 3.5e-55 219.5 327 44.0
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 1.2e-50 204.5 334 41.0
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 1.3e-49 201.1 278 47.5
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 2.2e-49 200.3 334 39.5
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 2.8e-49 199.9 276 45.7
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 3.1e-48 196.4 267 47.6
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 4.1e-48 196.1 336 40.5
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 5.4e-48 195.7 329 39.2
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 2.7e-47 193.4 331 38.1
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 1.3e-46 191.0 301 43.5
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 3.3e-45 186.4 327 38.5
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.0e-43 181.4 332 39.2
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 5.7e-42 175.6 332 39.2
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 4.3e-37 159.5 244 43.9
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 4.3e-37 159.5 150 58.7
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 1.5e-34 151.0 324 35.2
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 2.6e-34 150.2 328 34.1
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 5.8e-34 149.1 294 37.8
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 5.4e-32 142.5 339 34.2
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 6.6e-30 135.6 344 30.5
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 3.6e-28 129.8 330 33.3
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.2e-20 104.8 162 40.1
BolC4t27673H Brassica oleracea HOM05D005300 ORTHO05D006622 1.3e-14 84.7 95 53.7
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 3.4e-10 70.1 72 54.2
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.2e-09 67.4 86 48.8
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.0e-06 58.5 33 75.8


User provided reference genes

Program Settings